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Efficient data representation of large job schedules

Efficient data representation of large job schedules

引用

7th international Doctoral workshop on Mathematical and Engineering Methods in Computer Science, MEMICS 2011

作者： Klusáček, Dalibor Rudová, Hana Faculty of Informatics Masaryk University Czech Republic

ISBN: (纸本)9783642259289

the increasing popularity of advanced schedule-based techniques designed to solve Grid scheduling problems requires the use of efficient data structures to represent the constructed job schedules. Based on our previous research in the area of advanced scheduling algorithms we have developed data representation designed to maintain large job schedules. We provide new details of the applied representation, especially about the binary heap data structure. the heap guarantees good efficiency of the crucial schedule update procedure which is used to keep the schedule consistent and up-to-date subject to dynamically changing state of the system. We prove the time complexity related to the use of such a structure and-using an experimental evaluation-we demonstrate the performance of this structure even for very large job schedules. © 2012 Springer-Verlag Berlin Heidelberg.

关键词： Scheduling algorithms

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Structure simulation with calculated NMR parameters-integrating COSMOS into the CCPN framework

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10th HealthGrid Conference and the 4th international workshop on Science Gateways for Life Sciences, IWSG-Life 2012

作者： Schneider, Olaf Fogh, Rasmus H. Sternberg, Ulrich Klenin, Konstantin Kondov, Ivan Karlsruhe Institute of Technology Steinbuch Centre for Computing Hermann-von-Helmholtz-Platz 1 76344 Eggenstein-Leopoldshafen Germany Department of Biochemistry University of Cambridge United Kingdom Institute of Biological Interfaces Karlsruhe Institute of Technology Germany

ISBN: (纸本)9781614990536

the Collaborative Computing Project for NMR (CCPN) has build a software framework consisting of the CCPN data model (with APIs) for NMR related data, the CcpNmr Analysis program and additional tools like CcpNmr FormatConverter. the open architecture allows for the integration of external software to extend the abilities of the CCPN framework with additional calculation methods. Recently, we have carried out the first steps for integrating our software Computer Simulation of Molecular structures (COSMOS) into the CCPN framework. the COSMOS-NMR force field unites quantum chemical routines for the calculation of molecular properties with a molecular mechanics force field yielding the relative molecular energies. COSMOS-NMR allows introducing NMR parameters as constraints into molecular mechanics calculations. the resulting infrastructure will be made available for the NMR community. As a first application we have tested the evaluation of calculated protein structures using COSMOS-derived 13C Cα and Cβ chemical shifts. In this paper we give an overview of the methodology and a roadmap for future developments and applications. © 2012 the authors and IOS Press. All rights reserved.

关键词： Electronic data interchange

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A review on low-complexity structures and algorithms for the correction of mismatch errors in time-interleaved ADCs

A review on low-complexity structures and algorithms for the...

引用

Annual IEEE Northeast workshop on Circuits and Systems (NEWCAS)

作者： Christian Vogel Matthias Hotz Shahzad Saleem Katharina Hausmair Michael Soudan FTW Telecommunications Research Center Vienna Vienna Austria Department of Electrical Engineering National University of Computer and Emerging Sciences Islamabad Pakistan Signal Processing and Speech Communication Laboratory Graz University of Technology Graz Austria

In this paper we review the progress in the design of low-complexity digital correction structures and algorithms for time-interleaved ADCs over the last five years. We devise a discrete-time model, state the design problem, and finally derive the algorithms and structures. In particular, we discuss efficient algorithms to design time-varying correction filters as well as iterative structures utilizing polynomial based filters. Finally, we give an outlook to future research questions.

关键词： Circuits and systems Complexity theory Algorithm design and analysis Calibration Time varying systems Polynomials Time frequency analysis

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Distributed media indexing based on MPI and MapReduce

Distributed media indexing based on MPI and MapReduce

引用

international workshop on Content-Based Multimedia Indexing, CBMI

作者： Hisham Mohamed Stéphane Marchand-Maillet Viper Group Computer Vision and Multimedia Laboratory University of Geneva Geneva Switzerland

Web-scale digital assets comprise millions or billions of documents. Due to such increase, sequential algorithms cannot cope with this data, and parallel and distributed computing become the solution of choice. MapReduce is a programming model proposed by Google for scalable data processing. MapReduce is mainly applicable for data intensive algorithms. In contrast, the message passing interface (MPI) is suitable for high performance algorithms. this paper proposes an adapted structure of MapReduce programming model using MPI for multimedia indexing. Experimental results on a large number of text (XML) excerpts related to images from the ImageNet corpus indicate that our implementation achieved good speedup compared to the sequential version and the earlier versions of MapReduce using MPI. Extensions to index large-scale multimedia collections are discussed.

关键词： Indexing Multimedia communication data models Libraries Programming Message passing

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the Non-geek's Guide to the DAE Platform

The Non-geek's Guide to the DAE Platform

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IAPR international workshop on Document Analysis Systems, DAS

作者： Bart Lamiroy Daniel Lopresti Université de Lorraine Nancy France CSE Department Lehigh University Bethlehem PA USA

the Document Analysis and Exploitation platform is a sophisticated technical environment that consists of a repository containing document images, implementations of document analysis algorithms, and the results of these algorithms when applied to data in the repository. the use of a web services model makes it possible to set up document analysis pipelines that form the basis for reproducible protocols. Since the platform keeps track of all intermediate results, it becomes an information resource for the analysis of experimental data. this paper provides a tutorial on how to get started using the platform. It covers the technical details needed to overcome the initial hurdles and have a productive experience with DAE.

关键词： Web services Servers Text analysis Tutorials Training Image segmentation data models

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A Strategy for Automatically Extracting References from PDF Documents

A Strategy for Automatically Extracting References from PDF ...

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IAPR international workshop on Document Analysis Systems, DAS

作者： Neide Ferreira Alves Rafael Dueire Lins Maria Lencastre Universidade do Estado do Amazonas Manaus Brazil Universidade Federal de Pernambuco Recife Brazil Universidade de Pernambuco Recife Brazil

Every day the number of citations an author receives is becoming more important than the size of his list of publications. the automatic extraction of bibliographic references in scientific articles is still a difficult problem in Document Engineering, even if the document is originally in digital form. this paper presents a strategy for extracting references of scientific documents in PDF format. the scheme proposed was validated in Live Memory platform, developed to generate digital libraries of proceedings of technical events.

关键词： data mining Classification algorithms Training Support vector machine classification Accuracy Portable document format Proposals

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Cache Performance and Efficiency Factors of Parallel data structures

Cache Performance and Efficiency Factors of Parallel Data St...

引用

international Symposium on Parallel and Distributed Processing with Applications, ISPA

作者： Ákos Dud's Juh'sz S'ndor

Multi-core CPUs are very efficient at executing multiple threads at the same time without significant performance penalty; this capability, however, results in increasing demand for the memory and the caches, which not only have to serve multiple parallel requests but also have to endure the consequences of parallel programming. the performance of parallel applications is not only limited by the CPU and the internal level of parallelism that the algorithms and data structures allow, but is also restricted by their memory characteristics. Altering the data structure for example to work with machine word-sized pointers required by atomic operations incurs additional cache misses, while a lock protecting a critical section not only consumes memory, but could also be responsible for increased memory traffic for cache-line invalidations when acquired or released. We investigate these effects and analyze the behavior of different parallelization mechanisms, both blocking and lock-free solutions, through the example of a basic data structure: a hash table.

关键词： data structures Instruction sets Parallel processing Scalability Hardware Synchronization Containers

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Ensemble of Biased Learners for Offline Arabic Handwriting Recognition

Ensemble of Biased Learners for Offline Arabic Handwriting R...

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IAPR international workshop on Document Analysis Systems, DAS

作者： Utkarsh Porwal Arti Shivram Chetan Ramaiah Venu Govindaraju Department of Computer Science and Engineering State University of New York Buffalo Amherst NY USA

Techniques and performance of text recognition systems and software has shown great improvement in recent years. OCRs now can read any machine printed document with good accuracy. However, the advancements are primarily for Latin scripts and even for such scripts performance is limited in case of handwritten documents. Little work has been done for cursive scripts such as Arabic and still there is a room for improvement both in terms of accuracy and techniques. this paper presents an algorithm to recognize handwritten Arabic text using an ensemble of biased classifiers in a hierarchical setting. We address the fundamental shortcomings of the traditional Machine Learning paradigms when applied to Arabic scripts. Experiments have been conducted on the AMA Arabic dataset to show the efficacy of our method.

关键词： Handwriting recognition Accuracy Text recognition Training Training data Approximation algorithms Hidden Markov models

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Efficient mining structural motifs for biosequences with intra- and inter-block gap constraints

Efficient mining structural motifs for biosequences with int...

引用

2012 10th IEEE international Conference on Intelligence and Security Informatics, ISI 2012

作者： Liao, Vance Chiang-Chi Chen, Ming-Syan Department of Electrical Engineering National Taiwan University Taipei Taiwan

ISBN: (纸本)9781467321037

Among the biological sequences, sequential pattern mining reveals implicit motifs/patterns, which are of functional significance and have specific structures. Small alphabets and long sequences, such as DNA and protein sequences, are difficult to handle by traditional sequential pattern mining algorithms. Furthermore, the intra- and inter-blocked gap constraints can deal with the substitutions, insertions, loops, and deletions in evolution process. Hence we propose an approach called Depth-first spelling algorithm for mining structural motifs with Intra- and inter-Block gap constraints in biological sequences (referred to as DIB). DIB has two execution steps. First, it constructs a three-dimensional table of sequences by scanning the given dataset once. Second, DIB-Exuberance generates intra- and inter-blocked gap sequential patterns. Candidate intra- and inter-blocked gap sequential pattern spelling and pattern verification are carried out by DIB-Exuberance in a depth-first manner. Intra and inter gap constraints are handled by the intra- and inter-block counting matrices. the block size matrix deals with intra- and inter-block size constraints. In biological sequences, DIB's runtime is much shorter than BASIC. © 2012 IEEE.

关键词： data mining

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Designing a Multicore Graph Library

Designing a Multicore Graph Library

引用

international Symposium on Parallel and Distributed Processing with Applications, ISPA

作者： Phillippe Samer Afonso H. Sampaio Anolan Milanés Sebastian Urrutia Universidade Federal de Minas Gerais Belo Horizonte Minas Gerais Brazil

Graph theory provides a set of powerful tools (both theorems and algorithms) for problem modeling and solving in numerous domains. though there are several libraries implementing graph algorithms and targeting different platforms and users, few of those offer parallel implementations. To the best of our knowledge, there is a particular need for an easier to use and extend library, specifically designed to exploit the multicore architecture trend for high performance parallelism. In this paper we describe Magical, a new OpenMP-based C++ multicore graph library. Our focus is to provide an implementation of graph algorithms which is designed for multicore architectures, by means of an easy to use application programming interface. We describe the library design and evaluate its performance by means of a case study concerning a shortest-paths problem.

关键词： Libraries Algorithm design and analysis Multicore processing data structures Vectors Programming

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