In this work, we present a geometric method to explore the relationship between brain anatomical structure and human intelligence based on conformal welding theory. We first generate the anatomical atlas on the struct...
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ISBN:
(纸本)9783030337209;9783030337193
In this work, we present a geometric method to explore the relationship between brain anatomical structure and human intelligence based on conformal welding theory. We first generate the anatomical atlas on the structural MRI data;then, compute the signature for each cortical region by welding the conformal maps of the region and its complement domain along the common boundary, and combine all the region signature as that for the whole brain;and finally, use the signatures for shape visualization and classification using the learning methods. the signature is global, intrinsic to surface and curve geometry, and invariant to conformal transformations;and the computation is efficient through solving sparse linear systems. Experiments on real data set with 243 subjects demonstrate the efficacy of the proposed method and concluded that the conformal welding signature of cortical surface can classify human intelligence with a competitive accuracy rate compared with traditional features.
History educators in large-lecture humanities undergraduate classrooms struggle to support reading comprehension, defined as the ability to simultaneously read a complex text critically, understand the text’s details...
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Background: Meeting the growing industry demand for data Science requires cross-disciplinary teams that can translate machine learning research into production-ready code. Software engineering teams value adherence to...
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this paper describes a visualization technique designed to help work with complex diagrams containing multiple types of nodes and edges, by using a combination of visual clutter reduction and graph exploration techniq...
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ISBN:
(纸本)9789897583544
this paper describes a visualization technique designed to help work with complex diagrams containing multiple types of nodes and edges, by using a combination of visual clutter reduction and graph exploration techniques. We show its application, including preliminary evaluation, on software engineering projects data gathered from various tools and repositories used for software development. An online tool implementing the technique and plans for its extension by a connected view of time perspective data are briefly presented.
this paper argues for the use of a topology learning algorithm, the Growing Neural Gas (GNG), for providing an overview of the structure of large and multidimensional datasets that can be used in exploratory data anal...
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ISBN:
(纸本)9789897583544
this paper argues for the use of a topology learning algorithm, the Growing Neural Gas (GNG), for providing an overview of the structure of large and multidimensional datasets that can be used in exploratory dataanalysis. We introduce a generic, off-the-shelf library, Visual GNG, developed using the Big data framework Apache Spark, which provides an incremental visualization of the GNG training process, and enables userin-the-loop interactions where users can pause, resume or steer the computation by changing optimization parameters. Nine case studies were conducted with domain experts from different areas, each working on unique real-world datasets. the results show that Visual GNG contributes to understanding the distribution of multidimensional data;finding which features are relevant in such distribution;estimating the number of k clusters to be used in traditional clustering algorithms, such as K-means;and finding outliers.
Sports datavisualization can be a useful tool for analyzing or presenting sports data. In this paper, we present a new technique to visualize and analyze shot-by-shot tactical patterns in tennis. Previous work in ten...
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ISBN:
(纸本)9783030337230;9783030337223
Sports datavisualization can be a useful tool for analyzing or presenting sports data. In this paper, we present a new technique to visualize and analyze shot-by-shot tactical patterns in tennis. Previous work in tennis dataanalysis and visualization focus more on high-level statistics and overviews such as heat-maps but did not handle data analytics at micro-level. Our visualization technique can reveal patterns and imbalances in a tennis match that lead to a deeper understanding of the game. We demonstrate the application and benefits of our visualization technique with case studies.
Visual data exploration is a useful means to extract relevant information from large sets of data. the visual analytics pipeline processes data recorded from the real world to extract knowledge from gathered data. Sub...
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ISBN:
(纸本)9789897583544
Visual data exploration is a useful means to extract relevant information from large sets of data. the visual analytics pipeline processes data recorded from the real world to extract knowledge from gathered data. Subsequently, the resulting knowledge is associated withthe real world and applied to it. However, the considered data for the analysis is usually only a small fraction of the actual real-world data and lacks above all in context information. It can easily happen that crucial context information is disregarded, leading to false conclusions about the real world. therefore, conclusions and reasoning based on the analysis of this data pertain to the world represented by the data, and may not be valid for the real world. the purpose of this paper is to raise awareness of this discrepancy between the data world and the real world which has a high impact on the validity of analysis results in the real world. We propose two strategies which help to identify and remove specific differences between the data world and the real world. the usefulness and applicability of our strategies are demonstrated via several use cases.
the emerging Network Medicine domain is causing a shift between diagnosis based on the conventional reductionist approach, arguing that biological factors work in a simple linear way, and the analysis of perturbations...
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ISBN:
(纸本)9789897583544
the emerging Network Medicine domain is causing a shift between diagnosis based on the conventional reductionist approach, arguing that biological factors work in a simple linear way, and the analysis of perturbations within the comprehensive network map of molecular components and their interactions, i.e., the "Interactome". As a consequence, clinicians are investigating more than 140,000 interactions between more than 13,000 genes and their connections with drugs and diseases, along a sequence of "networks". Making sense of this complex structure is a challenging activity and the visual analytics application NEMESIS tries to attack such a problem allowing for interactively exploring this large body of knowledge, focusing on subsets of data and investigating their relationships with other relevant dimensions, pursuing the main goal of facilitating hypothesis formulation and validation.
Background: Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology that combines chromatin immunoprecipitation (ChIP) with next generation of sequencing technology (NGS) to analyze protein interactions wi...
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Background: Chromatin immunoprecipitation sequencing (ChIP-seq) is a technology that combines chromatin immunoprecipitation (ChIP) with next generation of sequencing technology (NGS) to analyze protein interactions with DNA. At present, most ChIP-seq analysis tools adopt the command line, which lacks user-friendly interfaces. Although some web services with graphical interfaces have been developed for ChIP-seq analysis, these sites cannot provide a comprehensive analysis of ChIP-seq from raw data to downstream analysis. Results: In this study, we develop a web service for the whole process of ChIP-Seq analysis (CSA), which covers mapping, quality control, peak calling, and downstream analysis. In addition, CSA provides a customization function for users to define their own workflows. And the visualization of mapping, peak calling, motif finding, and pathway analysis results are also provided in CSA. For the different types of ChIP-seq datasets, CSA can provide the corresponding tool to perform the analysis. Moreover, CSA can detect differences in ChIP signals between ChIP samples and controls to identify absolute binding sites. Conclusions: the two case studies demonstrate the effectiveness of CSA, which can complete the whole procedure of ChIP-seq analysis. CSA provides a web interface for users, and implements the visualization of every analysis step. the website of CSA is available at http://***.
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