the proceedings contain 16 papers. the topics discussed include: filter position in networks of evolutionary processors does not matter: a direct proof;strand algebras for dnacomputing;a domain-specific language for ...
ISBN:
(纸本)364210603X
the proceedings contain 16 papers. the topics discussed include: filter position in networks of evolutionary processors does not matter: a direct proof;strand algebras for dnacomputing;a domain-specific language for programming in the tile assembly model;advancing the deoxyribozyme-based logic gate design process;dna chips for species identification and biological phylogenies;renewable, time-responsive dna logic gates for scalable digital circuits;self-assembly of the discrete Sierpinski carpet and related fractals;automatic design of dna logic gates based on kinetic simulation;design of a biomolecular device that executes process algebra;the effect of malformed tiles on tile assemblies within kTAM;positional state representation and its transition control for photonic dna automation;construction of AND gate for RTRACS withthe capacity of extension to NAND gate;and time-complexity of multilayered dna strand displacement circuits.
the proceedings contain 16 papers. the special focus in this conference is on Bio-inspired Information and Communication Technologies. the topics include: Optimizing Drug Delivery Strategies by Pathway Analysis f...
ISBN:
(纸本)9783031815980
the proceedings contain 16 papers. the special focus in this conference is on Bio-inspired Information and Communication Technologies. the topics include: Optimizing Drug Delivery Strategies by Pathway Analysis for Waveform Modulation-Based molecular Communication;Enhancing dna-Based IoBNT throughput and Reducing Congestion with Yin-Yang Coding;a molecular Communication Model Driven by Magnetic Field Force;CDM Based on Izhikevich Neuron Model;multi-user Diffusive molecular Communication Systems with A Passive Relay Node: Receiver Design and Performance Analysis;machine Learning-Based Detection Time Estimation for molecular Communication;taming Signal-Dependent Counting Noise with Machine Learning for molecular Communication;energy-Efficient Transmitter Creation in molecular Communication;a Method for Determining Relay Node Location in molecular Communication;glycemic Oscillation Decomposition-Based Personalized Blood Glucose Prediction with Continuous Glucose Monitoring;A Compact Bio-inspired Microstrip Antenna (Bi-MPA) for Medical Microwave Imaging Applications;Image Encryption and Decryption Algorithm Based on dna Sequence: Performance Analysis of Channel Fusion Processing;Optimizing the Classification of SSVEP Signals in Brain-Computer Interfaces: A Novel Sliding Window Data Segmentation Method Based on Weighted Voting Mechanism;spontaneous Motion of Nanorobots Inspired Computational Technology for Tumor Boundary Exploration.
this paper presents a focused analysis of enhancing the Internet of Bio-Nano things (IoBNT) network performance by addressing congestion and improving throughput. We introduce a propagation model for a high-throughput...
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ISBN:
(纸本)9783031815980;9783031815997
this paper presents a focused analysis of enhancing the Internet of Bio-Nano things (IoBNT) network performance by addressing congestion and improving throughput. We introduce a propagation model for a high-throughput dna-based track-hopper channel to study congestion using molecular hopper dynamics and Markov state transitions alongside a novel approach for throughput measurement. Our research aims at reducing congestion by increasing information density, allowing for more efficient data transmission with fewer packets. Initially, attempts to amplify density encountered challenges related to bio-compatibility and increased decoding errors. Moreover, congestion precipitated the formation of problematic dna structures such as hairpins during sequencing. We adopted the yin-yang coding (YYC) to overcome these hurdles, encoding two binary bits into one nucleotide for sequences compatible with synthesis and sequencing technologies. Simulation results validate the YYC coding mechanism's effectiveness and propagation models' robustness, significantly advancing IoBNT network performance optimization.
the proceedings contain 15 papers. the topics discussed include: extending dna-sticker arithmetic to arbitrary size using staples;parallel computation using active self-assembly;dna walker circuits: computational pote...
ISBN:
(纸本)9783319019277
the proceedings contain 15 papers. the topics discussed include: extending dna-sticker arithmetic to arbitrary size using staples;parallel computation using active self-assembly;dna walker circuits: computational potential, design, and verification;leaderless deterministic chemical reaction networks;dna sticky end design and assignment for robust algorithmic self-assembly;dna reservoir computing: a novel molecularcomputing approach;signal transmission across tile assemblies: 3D static tiles simulate active self-assembly by 2D signal-passing tiles;3-color bounded patterned self-assembly;exponential replication of patterns in the signal tile assembly model;modular verification of dna strand displacement networks via serializability analysis;iterative self-assembly with dynamic strength transformation and temperature control;probabilistic reasoning with an enzyme-driven dna device;staged self-assembly and polyomino context-free grammars;and functional analysis of large-scale dna strand displacement circuits.
We present a process algebra for dnacomputing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into dna structures.
ISBN:
(纸本)9783642106033
We present a process algebra for dnacomputing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into dna structures.
dna automaton is utilized as a processing core of a nanoscale processor that can deal withmolecular information directly. We are studying on photonic dna automaton in which light and dna are used as information carri...
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ISBN:
(纸本)9783642106033
dna automaton is utilized as a processing core of a nanoscale processor that can deal withmolecular information directly. We are studying on photonic dna automaton in which light and dna are used as information carriers. In the automaton, the internal states are represented as the conformation of dna, or the spatial position of the specific bases in the dna strand, and the state-transition is induced by an external optical signal. this paper focuses on a method for state representation and state transition control based on the conformation of dna. An implementation using hairpin-dna is experimentally demonstrated to verify the proposed scheme.
Tile assembly model is a highly distributed parallel model of dnacomputing. this paper proposes how the tile assembly process could be used for computingthe modularsquare, an operation combining square and reduction...
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ISBN:
(纸本)9780769550886
Tile assembly model is a highly distributed parallel model of dnacomputing. this paper proposes how the tile assembly process could be used for computingthe modularsquare, an operation combining square and reduction, over finite field GF(2(n)). In this molecularcomputing system, reduction is executed after the completion of square. the time complexity of this molecularcomputing system is theta(n) and the space complexity is theta(n(2)). this system requires 75 types of computation tiles and 9 types of boundary tiles.
Sequence alignment has a lot of significance in the field of bioinformatics. Since multiple sequence alignment (MSA) carries more information than pairwise alignment of the sequences, it has more number of application...
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ISBN:
(纸本)9781467328166;9781467328180
Sequence alignment has a lot of significance in the field of bioinformatics. Since multiple sequence alignment (MSA) carries more information than pairwise alignment of the sequences, it has more number of applications. In the past few decades many algorithms and tools have been developed for the computation of multiple sequence alignment. However, accuracy of MSA still remains an open problem for further research. As more and more experimental data is being generated through sequencing technologies of second generation, there is an urgent need to develop tools that make use of integrative methods to derive biologically meaningful information from these immense data and use it to improve the accuracy of MSA. MSA tools that can scale upto the full length genome will also find wide applications in the near future.
the area of dna cryptography is an interdisciplinary field that has emerged recently, focusing on the possible applications of dna (deoxyribonucleic acid) molecules for secure encryption and data storage. It uses dna ...
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