the proceedings contain 9 papers. the topics discussed include: fast and robust strand displacement cascades via systematic design strategies;universal shape replication via self-assembly with signal-passing tiles;a c...
ISBN:
(纸本)9783959772532
the proceedings contain 9 papers. the topics discussed include: fast and robust strand displacement cascades via systematic design strategies;universal shape replication via self-assembly with signal-passing tiles;a coupled reconfiguration mechanism for single-stranded dna strand displacement systems;exploring material design space with a deep-learning guided genetic algorithm;modelling and optimization of a dna stack nano-device using probabilistic model checking;on Turedo hierarchies and intrinsic universality;computing real numbers with large-population protocols having a continuum of equilibria;the structural power of reconfigurable circuits in the Amoebot model;and fault-tolerant shape formation in the Amoebot model.
the proceedings contain 11 papers. the topics discussed include: the topology of scaffold routings on non-spherical mesh wireframe;simplifying chemical reaction network implementations with two-stranded dna building b...
ISBN:
(纸本)9783959771634
the proceedings contain 11 papers. the topics discussed include: the topology of scaffold routings on non-spherical mesh wireframe;simplifying chemical reaction network implementations with two-stranded dna building blocks;composable computation in leaderless, discrete chemical reaction networks;CRNs exposed: a method for the systematic exploration of chemical reaction networks;population-induced phase transitions and the verification of chemical reaction networks;ALCH: an imperative language for chemical reaction network-controlled tile assembly;implementing non-equilibrium networks with active circuits of duplex catalysts;design automation of polyomino set that self-assembles into a desired shape;verification and computation in restricted tile automata;and turning machines.
the proceedings contain 11 papers. the topics discussed include: Turing universality of step-wise and stage assembly at temperature 1;a type system for dnaQL;deterministic function computation with chemical reaction n...
ISBN:
(纸本)9783642322075
the proceedings contain 11 papers. the topics discussed include: Turing universality of step-wise and stage assembly at temperature 1;a type system for dnaQL;deterministic function computation with chemical reaction networks;reachability bounds for chemical reaction networks and strand displacement systems;synthesizing minimal tile sets for complex patterns in the framework of patterned dna self-assembly;a geometric approach to Gibbs energy landscapes and optimal dna codeword design;a dna based molecular logic gate capable of a variety of logical operations;deciding whether a regular language is generated by a splicing system;probabilistic reasoning with a Bayesian dna device based on strand displacement;dna self-assembly and computation studied with a coarse-grained dynamic bonded model;and space and energy efficient computation withdna strand displacement systems.
the proceedings contain 16 papers. the topics discussed include: improving efficiency of 3-SAT-solving tile systems;optimizing tile concentrations to minimize errors and time for dna tile self-assembly systems;scalabl...
ISBN:
(纸本)9783642183041
the proceedings contain 16 papers. the topics discussed include: improving efficiency of 3-SAT-solving tile systems;optimizing tile concentrations to minimize errors and time for dna tile self-assembly systems;scalable, time-responsive, digital, energy-efficient molecular circuits using dna strand displacement;negative interactions in irreversible self-assembly;search and validation of short genome-wide biomarkers for bacterial biological phylogenies;high-fidelity dna hybridization using programmable moleculardna devices;synthesizing minimal tile sets for patterned dna self-assembly;operation of a dna-based autocatalytic network in serum;triangular tile self-assembly systems;randomized self assembly of rectangular nano structures;design of a functional nanomaterial with recognition ability for constructing light-driven nanodevices;efficient Turing-universal computation withdna polymers;and simple evolution of complex crystal species.
We present a process algebra for dnacomputing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into dna structures.
ISBN:
(纸本)9783642106033
We present a process algebra for dnacomputing, discussing compilation of other formal systems into the algebra, and compilation of the algebra into dna structures.
Sequence alignment has a lot of significance in the field of bioinformatics. Since multiple sequence alignment (MSA) carries more information than pairwise alignment of the sequences, it has more number of application...
详细信息
ISBN:
(纸本)9781467328166;9781467328180
Sequence alignment has a lot of significance in the field of bioinformatics. Since multiple sequence alignment (MSA) carries more information than pairwise alignment of the sequences, it has more number of applications. In the past few decades many algorithms and tools have been developed for the computation of multiple sequence alignment. However, accuracy of MSA still remains an open problem for further research. As more and more experimental data is being generated through sequencing technologies of second generation, there is an urgent need to develop tools that make use of integrative methods to derive biologically meaningful information from these immense data and use it to improve the accuracy of MSA. MSA tools that can scale upto the full length genome will also find wide applications in the near future.
dna automaton is utilized as a processing core of a nanoscale processor that can deal withmolecular information directly. We are studying on photonic dna automaton in which light and dna are used as information carri...
详细信息
ISBN:
(纸本)9783642106033
dna automaton is utilized as a processing core of a nanoscale processor that can deal withmolecular information directly. We are studying on photonic dna automaton in which light and dna are used as information carriers. In the automaton, the internal states are represented as the conformation of dna, or the spatial position of the specific bases in the dna strand, and the state-transition is induced by an external optical signal. this paper focuses on a method for state representation and state transition control based on the conformation of dna. An implementation using hairpin-dna is experimentally demonstrated to verify the proposed scheme.
Tile assembly model is a highly distributed parallel model of dnacomputing. this paper proposes how the tile assembly process could be used for computingthe modularsquare, an operation combining square and reduction...
详细信息
ISBN:
(纸本)9780769550886
Tile assembly model is a highly distributed parallel model of dnacomputing. this paper proposes how the tile assembly process could be used for computingthe modularsquare, an operation combining square and reduction, over finite field GF(2(n)). In this molecularcomputing system, reduction is executed after the completion of square. the time complexity of this molecularcomputing system is theta(n) and the space complexity is theta(n(2)). this system requires 75 types of computation tiles and 9 types of boundary tiles.
暂无评论