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检索条件"任意字段=16th International Conference on DNA Computing and Molecular Programming, DNA 16"

共 108 条记录，以下是1-10 订阅

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A Review of dna Cryptography: From a Data Protection Perspective 16

A Review of DNA Cryptography: From a Data Protection Perspec...

引用

16th international conference on Security of Information and Networks, SIN 2023

作者： Parmar, Parth Gadhiya, Jekil Vats, Satvik Verma, Deepak Kumar Vaghela, Krunal Computer Engineering Marwadi University Rajkot India Computer Science and Engineering Graphic Era Hill University Dehradun India

ISBN: (纸本)9798350343212

the rate of development in today's IT industry is unprecedented. Information is being stored and transformed at a faster and faster rate. therefore, the importance of protecting sensitive data is growing. Everyone is concerned about preventing hackers from gaining access to their personal data. Several algorithms from the fields of classical cryptography and steganography can be used to conceal data. dna cryptography is an emerging field that aims to protect information kept in dna. dna cryptography takes use of dna's innate computing power at the molecular level. In this paper, we are exploring diverse cryptographic algorithms and methods that are used to secure the stored data in dna. the paper represents the critical review that includes merits and demerits of the diverse cryptographic algorithms for securing the data in dna. © 2023 IEEE.

关键词： dna

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Extracting Common dna Segments from the Complete Genomes of 7538 Viruses and Five Selected Mammals 16th

Extracting Common DNA Segments from the Complete Genomes of ...

引用

16th international conference on Computational Collective Intelligence (ICCCI)

作者： Wang, Jing-Doo Wang, Yi-Chun Asia Univ Dept Comp Sci & Informat Engn 500 Lioufeng Rd Wufeng Div Taichung Taiwan Chung Shan Med Univ Dept Biomed Sci 110Sec 1Jianguo North Rd Taichung Taiwan

ISBN: (纸本)9783031702471;9783031702488

this paper aims to extract common dna consecutive sequences appearing in both of the complete genomes of viruses and that of mammals. With these common dna sequences as genomic fossils, biologists or virologists can trace possible pathway of genomic evolution across species. To meet the requirement of huge computation to extract common dna sequences from complete genomes of all viruses and mammals selected, this study adopts one previously developed approach that was based on MapReduce programming model. this study has experiments for extracting common dna sequences run on a Hadoop cluster containing ten computing nodes. Experimental resources includes the whole genomic sequences of 7,538 viruses and five selected mammals, including Homo sapiens (Human), Pan troglodytes (Chimpanzee), Mus musculus (House Mouse), Rattus norvegicus (Brown Rat) and Sus scrofa (Wild Boar). there are a huge amount of common dna consecutive sequences extracted and, for simplicity, there are only 26 ones whose lengths are longer than 50 base-pair (bp) selected for illustration. Among above 26, there are 13 reverified as no repetitive sequences that could be seemed as the clues to reinspect the relationship of viruses and mammals. Via cloud computing that can provide with more computing nodes then ten used in this study, it is believed that this approach can handle with more complete genomes of species, and then provide more common genomic fossils to biologists or virologist to verify the potential connections among diverse species in the future.

关键词： Comparative genomics Complete Genome Maximal Repeat Mammal Virus Hadoop MapReduce

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RUDEUS: A Machine Learning Classification System to Study dna-Binding Proteins 16

RUDEUS: A Machine Learning Classification System to Study DN...

引用

16th international conference on Knowledge Discovery and Information Retrieval, KDIR 2024 as part of 16th international Joint conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, IC3K 2024

作者： Medina-Ortiz, David Cabas-Mora, Gabriel Moya, Iván Soto-García, Nicole Uribe-Paredes, Roberto Departamento de Ingeniería En Computación Universidad de Magallanes Avenida Bulnes 01855 Punta Arenas Chile Centre for Biotechnology and Bioengineering CeBiB Universidad de Chile Beauchef 851 Santiago Chile

ISBN: (纸本)9789897587160

dna-binding proteins play crucial roles in biological processes such as replication, transcription, packaging, and chromatin remodeling. their study has gained importance across scientific fields, with computational biology complementing traditional methods. While machine learning has advanced bioinformatics, generalizable pipelines for identifying dna-binding proteins and their specific interactions remain scarce. We present RUDEUS, a Python library with hierarchical classification models to identify dna-binding proteins and distinguish between single- and double-stranded dna interactions. RUDEUS integrates protein language models, supervised learning, and Bayesian optimization, achieving 95% precision in dna-binding identification and 89% accuracy in distinguishing interaction types. the library also includes tools for annotating unknown sequences and validating dna-protein interactions through molecular docking. RUDEUS delivers competitive performance and is easily integrated into protein engineering workflows. It is available under the MIT License, with the source code and models available on the Github repository https://***/ProteinEngineering-PESB2/RUDEUS. © 2024 by SCITEPRESS – Science and Technology Publications, Lda.

关键词： Adversarial machine learning

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Modeling of Methylated dna Determination by Means of Ultrashort Laser Pulses 16

Modeling of Methylated DNA Determination by Means of Ultrash...

引用

16th IEEE international Scientific and Technical conference Actual Problems of Electronic Instrument Engineering, APEIE 2023

作者： Kharlamova, Anastasia A. Federal University named after M.V. Lomonosov Arkhangelsk Russia

ISBN: (纸本)9798350330885

the use of ultrashort laser pulses for the analysis of biomolecules as an alternative to dna sequencing by Sanger is discussed in this paper. A theory is proposed describing the interaction of a laser pulse with a polyatomic molecular structure, on the basis of which the process is modeled. Of interest is methylated dna - this is dna having methyl centers, whose presence or absence affects the work of the cell. Today, the detection of methyl groups by gel electrophoresis occurs with the pre-preparation of the sample using a chemical reaction: bisulfite sequencing converts methylcytosine into thymine. Violation of the dna structure by initial preparation can introduce errors in the analysis. the use of ultrashort laser pulses can save the study from the stage of chemical preparation of the molecule. the task of this work is to test the proposed mathematical apparatus for decoding the obtained interaction spectra. the scattering of a laser pulse on dna methylcytosine has been simulated. the obtained scattering spectra showed characteristic differences for both cases, which indicates the effectiveness of the method. the data can be used for research in medicine, biophysics. © 2023 IEEE.

关键词： dna

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Construction of Complex Logic Circuit Based on dna Logic Gate AND and OR 16th

Construction of Complex Logic Circuit Based on DNA Logic Gat...

引用

16th international conference on Bio-Inspired computing: theories and Applications, BIC-TA 2021

作者： Hu, Mengyang Wang, Luhui Xi, Sunfan Liu, Rong Dong, Yafei Department of Computer Science Shaanxi Normal University Xi’ an710119 China Department of Life Science Shaanxi Normal University Xi’ an710119 China

ISBN: (纸本)9789811912559

dna, as one of the most promising research objects for molecular computing, is often used to construct the basic modules of computing. A simple and multiplexable dna logic computing platform comprising a basic two input logic gate AND and OR, is designed by using G-quadruplex combined with NMM to generate fluorescence mechanism as output signal and dna strand as input signal. Designed dna strand displacement and catalytic hairpin self-assembly, achieving enzyme-free and label-free, simplified the design and reduced the cost. Strand displacement reactions not only enable signal amplification, but also provide methods to implement multi-layer cascading and solve complex computational problems by utilizing the basic logic gate AND and OR. In summary, this logic platform can realize the design of complex logic circuit by the constructed simple underlying logic gate AND and OR, which provides the potential to solve complex computational problems. © 2022, Springer Nature Singapore Pte Ltd.

关键词： Logic gates

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A Review of dna Cryptography: From a Data Protection Perspective

A Review of DNA Cryptography: From a Data Protection Perspec...

引用

Security of Information and Networks (SIN), international conference on

作者： Parth Parmar Jekil Gadhiya Satvik Vats Deepak Kumar Verma Krunal Vaghela Computer Engineering Marwadi University Rajkot India Computer Science and Engineering Graphic Era Hill University Dehradun India

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Synchronization of Chaos with a Single Driving Variable Feedback Control Based on dna Strand Displacement 16th

Synchronization of Chaos with a Single Driving Variable Feed...

引用

16th international conference on Bio-Inspired computing: theories and Applications, BIC-TA 2021

作者： Meng, Zijie An, Xiaoyu Sun, Junwei Zhengzhou University of Light Industry Zhengzhou450002 China

ISBN: (纸本)9789811912559

dna molecular reaction is one of methods to build next generation operational circuit. It has demonstrated the capacity to design control systems. In this paper, a PID controll based on dna strand displacement (DSD) is presented to realize synchronization of chaotic system. Based on the theory of synchronization and design principle of control, the proportion terms, integration terms, and differentiation terms are added to chaotic oscillatory systems for implementing synchronization by DSD. the two four-variable chaotic oscillatory systems are tended to be synchronization by PID control. there are four chemical reaction modules which are proposed to realize the systems. the modeling and simulation results demonstrate the validity of chemical reaction terms and control systems by visual DSD and matelab. Achieved the ideal results when it is applied to the chaotic system synchronization. © 2022, Springer Nature Singapore Pte Ltd.

关键词： three term control systems

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Solution to Satisfiability Problem Based on molecular Beacon Microfluidic Chip computing Model 16th

Solution to Satisfiability Problem Based on Molecular Beacon...

引用

16th international conference on Bio-Inspired computing: theories and Applications, BIC-TA 2021

作者： Yang, Jing Yin, Zhixiang Tang, Zhen Cui, Jianzhong Liu, Congcong School of Mathematics and Big Data Anhui University of Science and Technology Huainan232001 China School of Mathematics Physics and Statistics Shanghai University of Engineering Science Shanghai201620 China

ISBN: (纸本)9789811912559

the satisfiability problem is a well-known NPC problem in mathematics. In this paper, we report construction of a computational model based on molecular beacon microfluidic chip, to solve the satisfiability problem by using advantages such as;rapid, simple and economical measurement of molecular beacon probe. Taking 3-satisfiability problem as an example, we encode the variable and construct molecular beacon probe by combining the complement of corresponding dna strands with variable whose clause is 1. they are then fixed on the chip and placed in the microfluidic chip. It takes dna strands corresponding to all combinations of values as the initial data pool, and utilize the microfluidic chip to detect. If there are dna strands in the final data pool, it will be sequenced, and we call that this problem can be satisfied. If there are no dna strands, the problem is not satisfied. the complexity of the model is O(m) + O(n), where m is the number of clauses in conjunctive normal form, and n is the number of variables contained in the conjunctive normal form. this model represents great parallelism, massive storage capacity and high throughput, integration and multi-function of microfluidic chips. © 2022, Springer Nature Singapore Pte Ltd.

关键词： Microfluidic chips

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Tetracycline Intelligent Target-Inducing Logic Gate Based on Triple-Stranded dna Nanoswitch 16th

Tetracycline Intelligent Target-Inducing Logic Gate Based on...

引用

16th international conference on Bio-Inspired computing: theories and Applications, BIC-TA 2021

作者： Xi, Sunfan Wang, Yue Hu, Mengyang Wang, Luhui Cheng, Meng Dong, Yafei College of Life Science Shaanxi Normal University Shaanxi Xi’an710119 China School of Computer Science Shaanxi Normal University Shaanxi Xi’an710119 China

ISBN: (纸本)9789811912559

A previously unreported three-strand dna (ts-dna) non-metal structure with hairpin structure was designed based on a strategy of logic switching and tetracycline (TC) signaling molecule switching. Will target and TC-binding aptamer (TBA) is the combination of body, and its relation with three functional chain dna conformation, with programmable dna sensor signal by FAM input molecule fluorescence emission monitoring. After the combination, the input signal is converted to a fluorescent signal to perform a logical operation. By introducing a novel nanomaterial, graphene oxide (GO), as a signal regulator, the fluorescence response changed by intermolecular interactions is the key to achieving logical calculation. the harm of tetracycline can generally cause kidney damage, ear damage, gastrointestinal adverse reactions, skin allergies, *** tetracycline as a molecular trigger to induce conformational changes in dna, a logical operation target detection method was constructed. In addition, nanoscale devices can be reconfigured and optimized to accommodate additional logical calculations and target detection. © 2022, Springer Nature Singapore Pte Ltd.

关键词： dna

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Graphene Oxide-triplex Structure Based dna Nanoswitches as a Programmable Tetracycline-Responsive Fluorescent Biosensor 16th

Graphene Oxide-triplex Structure Based DNA Nanoswitches as a...

引用

16th international conference on Bio-Inspired computing: theories and Applications, BIC-TA 2021

作者： Wang, Luhui Wang, Yue Hu, Mengyang Xi, Sunfan Cheng, Meng Dong, Yafei College of Life Science Shaanxi Normal University Xi’an710119 China College of Computer Sciences Shaanxi Normal University Xi’an710119 China

ISBN: (纸本)9789811912559

the overuse of antibiotics will lead to the emergence of drug resistance so that many common diseases can not be effectively treated. therefore, based on the special structure of graphene oxide (GO) and dna triple strand, a programmable dna nanodevice for quantitative detection of tetracycline (TC) is designed in this paper. the introduction of GO as a quencher can effectively reduce the background fluorescence and whether there is any change in the fluorescence in the auxiliary system;Stabilizing the trigger chain with three chain structure will reduce the error more likely. the feasibility analysis preliminarily confirmed the realizability of the designed model, and the optimal conditions were obtained by condition optimization, which laid the foundation for the subsequent quantitative detection of TC, while the selective experiments in different systems fully showed that the model had excellent specificity. © 2022, Springer Nature Singapore Pte Ltd.

关键词： dna

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