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A parallel transferable uniform multi-round algorithm in heterogeneous distributed computing environment

引用

2nd international conference on High Performance computing and Communications (HPCC 2006)

作者： Yamamoto, Hiroshi Tsuru, Masato Oie, Yuji Kyushu Inst Technol Dept Comp Sci & Elect Iizuka Fukuoka 8208502 Japan

ISBN: (纸本)3540393684

The performance of parallel computing systems using the master/worker model for distributed grid computing tends to be degraded when large data sets have to be dealt with, due to the impact of data transmission time. In our previous study, we proposed a parallel transferable uniform multi-round algorithm (PTUMR), which efficiently mitigated this impact by allowing chunks to be transmitted in parallel to workers in environments that were homogeneous in terms of workers' computation and communication capacities. The proposed algorithm outperformed the uniform multi-round algorithm (UMR) in terms of application turnaround time, but it could not be directly adapted to heterogeneous environments. In this paper, therefore, we propose an extended version of PTUMR suitable for heterogeneous environments. This algorithm divides workers into appropriate groups based on both computation and communication capacities of individual workers, and then treats each group of workers as one virtual worker. The new PTUMR algorithm is shown through performance evaluations to significantly mitigate the adverse effects of data transmission time between master and workers compared with UMR, achieving turnaround times close to the theoretical lower limits even in heterogeneous environments.

关键词： grid computing master/worker model divisible workload multi-round scheduling UMR

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Semantic grid services in K-Wf grid

Semantic grid services in K-Wf grid

引用

2nd international conference on Semantics, Knowledge, and grid, SKG 2006

作者： Babik, Marian Gatial, Emil Habala, Ondrej Hluchy, Ladislav Laclavik, Michal Maliska, Martin Department of Parallel and Distributed Computing Institute of Informatics Slovak Academy of Sciences Bratislava Slovakia

ISBN: (纸本)076952673X

In this paper we present design and development of the semantic grid services for the flood forecasting simulations. We will highlight the corresponding architecture and the process of service annotation, discovery and composition in the project K-Wfgrid [12]. We will describe in detail the challenges of the flood-forecasting application and corresponding design and development of the service oriented model, which is based on the well known Web Service Resource Framework (WSRF). Semantic descriptions of the WSRF services will be presented as well as the architecture, which exploits semantics in discovery and composition of services. Further, we will demonstrate how experience management solutions can help in the process of discovery and composition. The system provides a unique approach in Semantic grids by combining the advances of semantic web services and grid architectures. © 2006 IEEE.

关键词： Web services

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grid approach to embarrassingly parallel CPU-intensive bioinformatics problems

Grid approach to embarrassingly parallel CPU-intensive bioin...

引用

e-Science 2006 - 2nd IEEE international conference on e-Science and grid computing

作者： Stockinger, Heinz Pagni, Marco Cerutti, Lorenzo Falquet, Laurent Swiss Institute of Bioinformatics Vital-IT Quartier Sorge - Batiment Genopode CH-1015 Lausanne Switzerland

ISBN: (纸本)0769527345

Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a single computer often runs for many hours or even days. High performance infrastructures such as clusters or computational grids provide the techniques to speed up the process by distributing the workload to remote nodes, running parts of the work load in parallel. Biologists often do not have access to such hardware systems. Therefore, we propose a new system using a modern grid approach to optimise an embarrassingly parallel problem. We achieve speed ups by at least two orders of magnitude given that we can use a powerful, world-wide distributed grid infrastructure. For large-scale problems our method can outperform algorithms designed for mid-size clusters even considering additional latencies imposed by grid infrastructures. © 2006 IEEE.

关键词： grid computing

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Achievements and experiences from a grid-based earthquake analysis and modelling study

Achievements and experiences from a Grid-based earthquake an...

引用

e-Science 2006 - 2nd IEEE international conference on e-Science and grid computing

作者： Liu, Jian Guo Ghanem, Moustafa Curcin, Vasa Haselwimmer, Christian Guo, Yike Morgan, Gareth Mish, Kyran Department of Earth Science and Engineering Imperial College London Department of Computing Imperial College London Fears Structural Engineering Laboratory University of Oklahoma

ISBN: (纸本)0769527345

We have developed and used a grid-based geoinformatics infrastructure and analytical methods for investigating the relationship between macro and microscale earthquake deformational processes by linking geographically distributed and computationally intensive earthquake monitoring and modelling tools. Using this infrastructure, measurement of lateral co-seismic deformation is carried out with imageodesy algorithms running on servers at the London eScience Centre. The resultant deformation field is used to initialise geomechanical simulations of the earthquake deformation running on supercomputers based at the University of Oklahoma. This paper describes the details of our work, summarizes our scientific results and details our experiences from implementing and testing the distributed infrastructure and analysis workflow. © 2006 IEEE.

关键词： grid computing

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A grid-based parallel optimization algorithm applied to a problem in metal casting industry

A grid-based parallel optimization algorithm applied to a pr...

引用

2nd international conference on Bioinspired Optimization Methods and their Applications, BIOMA 2006

作者： Jakumeit, Jürgen Barth, Thomas Reichwald, Julian Grauer, Manfred Thilo, Frank Friese, Thomas Smith, Matthew Freisleben, Bernd ACCESS e. V. Aachen Germany Information Systems Institute University of Siegen Germany Department of Mathematics and Computer Science University of Marburg Germany

ISBN: (纸本)9616303813

Since customers' quality requirements in casting industry are constantly increasing while 'time to market' must be reduced at the same time, utilizing numerical simulation of the physical casting process and its subsequent optimization is an important topic in casting industry. Simulation-based optimization of casting processes requires consideration of these characteristics: Handling the numerical properties of the optimization problem and the demand for computational resources due to excessive runtime of simulation. In this paper, a distributed optimization algorithm is presented, integrating features from 'traditional', deterministic optimization algorithms, their parallel extensions and Genetic Algorithms. In order to answer the demand for computational resources, its implementation within a grid computing infrastructure is briefly discussed. Similarities between the aforementioned classes of algorithms allow their application within the same grid-based environment. Preliminary results from such an environment integrating optimization algorithm and a simulation code for metal casting are also presented. The developed framework and the application show that grid technology can be an important tool to utilize a variety of optimization techniques and the necessary resources for the optimization of industrial processes.

关键词： grid computing

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Worqbench: An integrated framework for e-Science application development

Worqbench: An integrated framework for e-Science application...

引用

e-Science 2006 - 2nd IEEE international conference on e-Science and grid computing

作者： Kurniawan, Donny Abramson, David Monash e-Science and Grid Engineering Lab. Faculty of Information Technology Monash University

ISBN: (纸本)0769527345

With the proliferation of grid computing, potentially vast computational resources are available for solving complex problems in science and engineering. However, writing, deploying, and testing e-Science applications over highly heterogeneous and distributed infrastructure are complex and error prone. Further complicating matters, programmers may need to target a variety of different grid middleware packages. This paper presents the design and implementation of Worqbench, an integrated, modular and middleware neutral framework for eScience application development on the grid. Worqbench can be incorporated into a number of existing Integrated Development Environments, further leveraging the advantages of such systems. We illustrate one such implementation in the Eclipse environment. © 2006 IEEE.

关键词： grid computing

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Presenting scientific legacy programs as grid services via program synthesis

Presenting scientific legacy programs as grid services via p...

引用

e-Science 2006 - 2nd IEEE international conference on e-Science and grid computing

作者： Hofer, Jürgen Fahringer, Thomas Distributed and Parallel Systems Group University of Innsbruck Austria

ISBN: (纸本)0769527345

Extraordinary long lifecycles of many scientific applications commonly surpass multiple generations of grid technologies. Therefore the smooth adaptation and migration to newer environments remains as interesting research question. This paper presents the Otho Toolkit for synthesis of application-specific grid service wrappers based on specifications of scientific legacy programs. The services are customised and tailor-made for a specific application, service hosting environment and computational infrastructure and include source code for optional manual refinement. We demonstrate its unique combination of advanced features like support for multiple service platforms, parameter sweeping, iterative and parallel programs, progress-reporting, filestaging and security credential management. Moreover our services reliably identify program termination-causes based on programmatically evaluated post-mortem program states. We applied the Otho Toolkit recursively to itself to synthesise a sophisticated Factory service that creates application-specific grid services on-demand. © 2006 IEEE.

关键词： grid computing

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Mathematics computing environment on the Web

Mathematics computing environment on the Web

引用

2006 2nd international conference on Semantics Knowledge and grid, SKG

作者： Liu, Li Yang, Yi Li, An Computer Science Department Lanzhou University Lanzhou Gansu 730000 China Department of Mathematics Lanzhou University Lanzhou Gansu 730000 China

ISBN: (纸本)0769532055

With the rapid evolution of web technology and Internet, the mathematical web has emerged as a new research trend, which changes the traditional manner of mathematical scientific researching, mathematical production sharing, mathematical knowledge engineering and mathematical education. In addition, the acquisition of mathematical knowledge and the integration of diversiform of mathematical software are also taken into considers on the web environment. In this paper, we will present a web-based, user adaptive learning and grid computing environment that employs content encoded in a semantic representation of mathematical knowledge and integrates mathematics software as services. We have brought forward a concept which makes the mathematical computing environment working more efficiently. This mathematics computing environment mainly offers a powerful and convenient mathematics computing environment for end users and service providers. From the view of computing, this environment is a web-based service-oriented environment, built on three-layered resource model. From the view of end users, the formal representation allows semantics-based retrieval of distributed mathematical facts, giving mathematicians a tool and an easy-to-learn mathematical language to access and query the present mathematical knowledge and services. On the other hand, we use grid toolkits, which have the capabilities to aggregate and coordinate the computational power of geographically distributed, heterogeneous and dynamic resources efficiently, to organize and manage the mathematical resources. © 2006 IEEE.

关键词： Semantics

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Research on remote heterogeneous disaster recovery technology in grid computing security

Research on remote heterogeneous disaster recovery technolog...

引用

2006 2nd international conference on Semantics Knowledge and grid, SKG

作者： Wu, Ronghui Li, Renfa Yu, Fei Yue, Guangxue Wen, Jigang School of Computer and Communication Hunan University Changsha 410082 China State Key Laboratory for Novel Software Technology Nanjing University Nanjing 210093 China Provincial Key Laboratory of Computer Information Processing Technology Jiangsu Province Suzhou University Suzhou 150063 China College of Informationg Engineering JiaXing University JiaXing 314000 China

ISBN: (纸本)0769532055

The tradition standby mechanism can't carry out the dynamic Disaster Recovery of database between distributed isomeric storage systems, accordingly, research the method of allopatric isomeric backup based on grid calculation is an important research subject. In this paper, some technique and strategy of allopatric isomeric backup in grid calculation environment are researched by comparing and analyzing the existing technique of database allopatric backup, a remote-data copy method is presented, a remote-data disaster dump system and a allopatric isomeric data Disaster Recovery tool are designed and implemented based on interlaver. © 2006 IEEE.

关键词： Middleware

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Facilitating collaboration and application sharing with MAST and the access grid development infrastructures

Facilitating collaboration and application sharing with MAST...

引用

e-Science 2006 - 2nd IEEE international conference on e-Science and grid computing

作者： Lewis, Gareth Mehmood Hasan, S. Alexandrov, Vassil N. Dove, Martin T. Advanced Computing and Emerging Technology Centre School of Systems Engineering University of Reading Department of Earth Sciences University of Cambridge Downing Street Cambridge CB2 3EQ United Kingdom

ISBN: (纸本)0769527345

Multicast Application Sharing Tool (MAST) allows geographically distributed participants to share arbitrary legacy applications. MAST supports scalable group to group collaboration by using Multicast. It is being used within the eMinerals project to augment the Access grid functionality. In this paper we describe how MAST has taken advantage of the Node Service and Shared Application infrastructure provided by the Access grid Toolkit to facilitate flexible and convenient sharing of applications within the eMinerals Virtual Organisation. © 2006 IEEE.

关键词： grid computing

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