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The renal physiome project

The renal physiome project

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2006 3rd IEEE international symposium on Biomedical Imaging: From Nano to Macro

作者： Randall Thomas, S. Tahi, Fariza Harris, Peter Lonie, Andrew IBISC FRE 2873 CNRS University of Evry-Val d'Essonne Evry France University of Melbourne Melbourne Vic. 3010 Australia

ISBN: (纸本)0780395778

We discuss current progress towards two complementary web resources being developed for the Renal Physiome: (1) a database (QKdB) for quantitative and anatomical data at all levels of kidney organization, including molecular-level information on membrane channels and transporters, structural and functional parameter values at the epithelial level, measured flows and concentrations along vessels and nephron segments, anatomical data (including imaging studies) at all scales, etc.;and (2) an interactive interface to mathematical models of kidney structure and function, built around a zoomable 3d virtual unilobed kidney. These resources will facilitate interaction among renal modelers, experimental laboratories, and clinical researchers. © 2006 IEEE.

关键词： Biomedical engineering

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3rd international symposium on Intelligent data Analysis, IdA 1999

3rd International Symposium on Intelligent Data Analysis, ID...

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3rd international symposium on Intelligent data Analysis, IdA 1999

ISBN: (纸本)3540663320

The proceedings contain 44 papers. The special focus in this conference is on Learning and visualization. The topics include: From theoretical learnability to statistical measures of the learnable;a methodology for designing accurate linguistic models for intelligent data analysis;mining clusters with association rules;evolutionary computation to search for strongly correlated variables in high-dimensional time-series;the biases of decision tree pruning strategies;feature selection as retrospective pruning in hierarchical clustering;discriminative power of input features in a fuzzy model;learning elements of representations for redescribing robot experiences;intelligent monitoring method using time varying binomial distribution models for pseudo-periodic communication traffic;monitoring human information processing via intelligent data analysis of EEG recordings;knowledge-based visualization to support spatial data mining;navigating through large text collections;3d grand tour for multidimensional data and clusters;a decision tree algorithm for ordinal classification;discovering dynamics using bayesian clustering;integrating declarative knowledge in hierarchical clustering tasks;nonparametric linear discriminant analysis by recursive optimization with random initialization;supervised classification problems;temporal pattern generation using hidden markov model based unsupervised classification;exploiting similarity for supporting data analysis and problem solving;multiple prototype model for fuzzy clustering;a comparison of genetic programming variants for data classification;fuzzy clustering based on modified distance measures and building classes in object-based languages by automatic clustering.

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SAR dEM filtering by mean of Bayesian and multi-scale, nonstationary methods

SAR DEM filtering by mean of Bayesian and multi-scale, nonst...

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23rd international Geoscience and Remote Sensing symposium (IGARSS 2003)

作者： Maire, C datcu, M Audenino, P German Aerosp Ctr DLR IMF Remote Sensing Technol Inst D-82230 Wessling Germany

ISBN: (纸本)0780379292

Several signal processing techniques are presented and evaluated to filter/enhance SAR digital Elevation Models (dEMs). The results are compared to a topographic digital Terrain Model (dTM) in the context of 3d visualization and real-time rendering. Through the dLR X-SRTM dEM, the interest of InSAR data for such applications is illustrated.

关键词： component SRTM dEM Bayesian inference speckle InSAR data adaptative filter fBm wavelet thresholding

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Matlab software for high-resolution multichannel ECG measurement

Matlab software for high-resolution multichannel ECG measure...

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17th symposium IMEKO TC4 - Measurement of Electrical Quantities, 15th international Workshop on AdC Modelling and Testing, and 3rd symposium IMEKO TC19 - Environmental Measurements

作者： Karas, Slavomir Tysler, Milan Institute of Measurement Science Slovak Academy of Sciences Dúbravská cesta 9 841 04 Bratislava Slovakia

ISBN: (纸本)9781617823381

High resolution multichannel ECG measurement is necessary prerequisite for advanced diagnostics of various cardiovascular diseases. Special multichannel electrocardiograph ProCardio-8 was developed to obtain ECG signals with desired quality. The system is conceived as a virtual instrument with an external intelligent measuring unit connected to a host PC running dedicated application software. In this paper, the data acquisition software developed in MATLAB version 7 and using the Signal processing Toolbox is introduced. In the first part of the paper, applicability of MATLAB for fast data acquisition was verified and data throughput between the measuring unit and the PC was estimated using a data source with adjustable data rate. Second part of the paper is devoted to development and optimization of a measuring software module that includes control of the measuring unit, testing of electrode contacts and real time data acquisition, visualization and storage of measured data.

关键词： MATLAB

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Shape-constrained repulsive snake method to segment and track neurons in 3d microscopy images

Shape-constrained repulsive snake method to segment and trac...

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2006 3rd IEEE international symposium on Biomedical Imaging: From Nano to Macro

作者： Cai, Hongmin Xu, Xiaoyin Lu, Ju Lichtman, Jeff Yung, S.P. Wong, Stephen T. C. University of Hong Kong Department of Mathematics Hong Kong Hong Kong Center for Bioinformatics Harvard Center for Neurodegeneration and Repair Harvard Medical School Boston MA United States Functional and Molecular Imaging Center Department of Radiology Brigham and Women's Hospital Boston MA United States Harvard University Department of Molecular and Cellular Biology Cambridge MA United States

ISBN: (纸本)0780395778

To study the structure and branch pattern of neurons, it is important to segment and track neurons at first. We develop a snake model based on repulsive force to segment neurons in 3d microscopy image stacks. To overcome the difficulty that the boundary between two adjacent neurons is weak, we introduce a shape constraint on the snake deformation and use repulsive force to keep snakes of adjacent objects from merging into one. After obtaining the contours on the first image slice, we project them to the next slice as initialization for snake deformation and repeat the process for all the slices in a 3d image stacks. Individual neuron is tracked by connecting the corresponding snake through all slices. Results obtained from processing real data show that the method can successfully segment two or more neurons that are close to each other in 3d. © 2006 IEEE.

关键词： Neurology

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PAM-4 data transmission Quality Evaluation Using Two- and Three-dimensional Mapping of Received Symbols 53

PAM-4 Data Transmission Quality Evaluation Using Two- and Th...

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53rd IEEE international symposium on Multiple-Valued Logic, ISMVL 2023

作者： Yuminaka, Yasushi Nakajima, Kazuharu Iijima, Yosuke Gunma University Graduate School of Science and Technology Kiryu Japan Oyama Japan

ISBN: (纸本)9781665464161

Based on four-level pulse-amplitude modulation (PAM-4) symbol transition, this study investigated a two-dimensional (2d) symbol mapping technique that evaluates the quality of transmission data to set equalizer parameters adaptively. The 2d symbol transition mapping enables visualization of the degree of intersymbol interference (ISI). The simulation results demonstrate that the 2d symbol mapping can evaluate the PAM-4 data transmission quality degraded by ISI and can visualize the effect of equalization. The applications of 2d mapping and the extension of 2d mapping to 3d mapping are also discussed. © 2023 IEEE.

关键词： Intersymbol interference

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EU-TeleInViVo: An integrated portable telemedicine workstation featuring acquisition, processing and transmission over low-bandwidth lines of 3d ultrasound volume images

EU-TeleInViVo: An integrated portable telemedicine workstati...

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Joint Meeting of the 3rd IEEE EMBS international Conference on Information Technology Applications in Biomedicine/3rd Workshop of the Int-Telemedical-Information-Society

作者： Kontaxakis, G Walter, S Sakas, G Tech Univ Madrid Dept Elect Engn E-28040 Madrid Spain

ISBN: (纸本)078036449X

A transportable telemedicine workstation has been designed, developed and evaluated for use in isolated areas such as islands, rural areas and crisis situation areas. The EU-TelelnViVo is a custom-made device integrating in one solid case: a portable PC with telecommunication capabilities and a light, portable 3d ultrasound station. The device is now being tested in different socioeconomic conditions and adjusted accordingly to meet needs of developing countries and countries in transition. It currently comes in two versions, one fully portable, self-containing device, and a workstation version (PC attached to an ultrasound scanner for internal hospital use). A dedicated software package has been developed for the needs of this project, based on the In-VIVo ScanNT software package developed at Fraunhofer IGd. during a teleconsultation both partners, connected over a telecommunications network, are able to share the same interface and perform tasks visible in real-time, even on low bandwidth channels, to both ends on the same data set. The system supports various ways communication, such as Internet, ISdN, common phone lines, GSM, etc.

关键词： telemedicine teleconsultation 3d freehand ultrasound interface sharing portable workstation

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Smart 3d visualizations in clinical applications

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3rd international symposium on Smart Graphics, SG 2003

作者： Preim, Bernhard Peitgen, Heinz-Otto Institute for Simulation and Graphics Department for Computer Science Otto-von-Guericke-University of Magdeburg Universitaetsplatz 2 Magdeburg39106 Germany Center for Medical Diagnosic Systems and Visualization Universitaetsallee 29 Bremen28359 Germany

ISBN: (纸本)3540405577

We discuss techniques for the visualization of medical volume data dedicated for their clinical use. We describe the need for rapid dynamic interaction facilities with such visualizations and discuss emphasis techniques in more detail. Another crucial aspect of medical visualization is the integration of 2d and 3d visualizations. In order to organize this discussion, we introduce 6 „Golden"rules for medical visualizations. © Springer-Verlag Berlin Heidelberg 2003.

关键词： visualization

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An External Calibration Method for the Circular Scanning device Used for Bend Tube Intelligent Inspection 3

An External Calibration Method for the Circular Scanning Dev...

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3rd international symposium on Robotics and Intelligent Manufacturing Technology, ISRIMT 2021

作者： Zou, Hangbo Xia, Renbo Zhao, Jibin Zhang, Tianyu Chen, Yueling Fu, Shengpeng Shenyang Institute of Automation Chinese Academy of Sciences State Key Laboratory of Robotics Shenyang110016 China Institutes for Robotics and Intelligent Manufacturing Chinese Academy of Sciences Shenyang110169 China University of Chinese Academy of Sciences Beijing100049 China

ISBN: (纸本)9781665437189

In order to realize the intelligent inspection of bend tube processing defects, such as the wrinkles and the ovality, a 3d scanning device composed of a linear translation stage and four uniformly distributed laser profilers (LPs) is built in this paper. For the external calibration of this type of device, the major contribution of this paper are: 1) A 3d calibration object composed of three non-collinear target balls (TBs) is designed. Even if the scanning angle of each LP is limited, there are still common geometric features. 2) A frame-by-frame fusion method for scan data from multiple LPs that only requires one set of rail parameters is proposed to avoid the introduction of multiple sets of rail errors that affect equipment calibration and data fusion. When calculating the parameters, the shape error of the TBs after fusing the scan data of each LP is taken as the objective function, and the nonlinear least square method is used to solve the problem. Finally, the scan data fusion can maintain the accuracy and stability of the shape. The fitting error of the TB with a nominal radius of 19.05mm does not increase with the increase of the guideway stroke, the average fitting error of the radius is stable at about 0.0014mm, and the average RMSE of the surface point is stable at about 0.0426mm. © 2021 IEEE.

关键词： data fusion

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Accurate camera calibration and correction using rigidity and radial alignment constraints 4

Accurate camera calibration and correction using rigidity an...

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4th international symposium on 3d data processing, visualization and transmission, 3dPVT 2008

作者： Liu, Yonghuai Al-Obaidi, Ala Jakas, Anthony Li, Longzhuang Aberystwyth University CeredigionSY23 3DB United Kingdom Smart Light Devices Ltd. AberdeenAB24 2YN United Kingdom Texas A and M University Corpus ChristiTX78412 United States

In this paper, we develop a novel method for camera calibration and correction. The novel method first employs a rigidity constraint from the rigid rotation matrix and the radial alignment constraint from the pin-hole camera model to estimate both camera intrinsic and extrinsic parameters with a closed-form solution without considering the camera distortion. Then the well-known Levernburg-Marquardt (LM) algorithm is employed to optimize the parameters of interest in two steps: the first step optimizes the first order radial distortion coefficient and the z component of the camera position using a partial image formation model, and the second step optimizes all the parameters of interest using a complete image formation model: 4 intrinsic, 7 extrinsic and 4 distortion parameters. The LM algorithm is initialised either as the parameters estimated so far or as zero. The optimization is achieved through minimising the sum of the squared differences between the distorted projected 3d world control points and their given corresponding distorted image points. The distorted points are finally corrected using again the LM algorithm initialized by the distorted image points themselves, minimizing the squared difference between the distorted corrected point and the given distorted image point. The experimental results based on both synthetic data and real images show that the proposed algorithm produces promising camera calibration and correction results. © 2008 Georgia Institute of Technology.

关键词： Rigidity

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