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parallel processing and applied mathematics - 9th international conference, PPAM 2011, Revised Selected Papers

Parallel Processing and Applied Mathematics - 9th Internatio...

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9th international conference on parallel processing and applied mathematics, PPAM 2011

ISBN: (纸本)9783642314636

the proceedings contain 142 papers. the topics discussed include: modeling a leadership-scale storage system;combining optimistic and pessimistic replication;on time constraints of reliable broadcast protocols for ad hoc networks with the liveness property;data transfers on the fly for hierarchical systems of chip multi-processors;parallel preconditioner for nonconforming adini discretization of a plate problem on nonconforming meshes;incomplete cyclic reduction of banded and strictly diagonally dominant linear systems;fast and small nonlinear pseudorandom number generators for computer simulation;parallel cost function determination on GPU for the job shop scheduling problem;partitioning and scheduling workflows across multiple sites with storage constraints;grid branch-and-bound for permutation flowshop;and an experimental comparison of load balancing strategies in a web computing environment.

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parallel Maximal Common Subgraphs with Labels for Molecular Biology 15th

Parallel Maximal Common Subgraphs with Labels for Molecula...

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15th international conference on parallel processing and applied mathematics, PPAM 2024

作者： Agbeto, Wilfried Coti, Camille Reinharz, Vladimir Université du Québec à Montréal Montreal Canada École de Technologie Supérieure Montreal Canada

ISBN: (纸本)9783031856969

Advances in graph algorithmics have allowed in-depth study of many natural objects from molecular biology or chemistry to social networks. Particularly in molecular biology and cheminformatics, understanding complex structures by identifying conserved sub-structures is a key milestone towards the artificial design of novel components with specific functions. Given a dataset of structures, we are interested in identifying all maximum common connected partial subgraphs between each pair of graphs, a task notoriously NP-Hard. In this work, we present parallel algorithms over shared and distributed memory to enumerate all maximal connected common sub-graphs between pairs of arbitrary multi-directed graphs with labels on their edges. We offer an implementation of these methods and evaluate their performance on the non-redundant dataset of all known RNA 3D structures. We show that we can compute the exact results in a reasonable time for each pairwise comparison while taking into account a much more diverse set of interactions—resulting in much denser graphs—resulting in an order of magnitude more conserved modules. All code is available at https://***/cbe/pasigraph and results in the branch results. © the Author(s), under exclusive license to Springer Nature Switzerland AG 2025.

关键词： Directed graphs

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14th international conference on parallel processing and applied mathematics, PPAM 2022

14th International Conference on Parallel Processing and App...

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14th international conference on parallel processing and applied mathematics, PPAM 2022

ISBN: (纸本)9783031304415

the proceedings contain 77 papers. the special focus in this conference is on parallel processing and applied mathematics. the topics include: Neural Nets with a Newton Conjugate Gradient Method on Multiple GPUs;Exploring Techniques for the Analysis of Spontaneous Asynchronicity in MPI-parallel Applications;Cost and Performance Analysis of MPI-Based SaaS on the Private Cloud Infrastructure;building a Fine-Grained Analytical Performance Model for Complex Scientific Simulations;evaluation of Machine Learning Techniques for Predicting Run Times of Scientific Workflow Jobs;Smart Clustering of HPC Applications Using Similar Job Detection Methods;distributed Work Stealing in a Task-Based Dataflow Runtime;task Scheduler for Heterogeneous Data Centres Based on Deep Reinforcement Learning;Shisha: Online Scheduling of CNN Pipelines on Heterogeneous Architectures;General Framework for Deriving Reproducible Krylov Subspace Algorithms: BiCGStab Case;proactive Task Offloading for Load Balancing in Iterative Applications;language Agnostic Approach for Unification of Implementation Variants for Different Computing Devices;high Performance Dataframes from parallel processing Patterns;global Access to Legacy Data-Sets in Multi-cloud Applications with Onedata;MD-Bench: A Generic Proxy-App Toolbox for State-of-the-Art Molecular Dynamics Algorithms;Breaking Down the parallel Performance of GROMACS, a High-Performance Molecular Dynamics Software;GPU-Based Molecular Dynamics of Turbulent Liquid Flows with OpenMM;a Novel parallel Approach for Modeling the Dynamics of Aerodynamically Interacting Particles in Turbulent Flows;reliable Energy Measurement on Heterogeneous Systems–on–Chip Based Environments;distributed Objective Function Evaluation for Optimization of Radiation therapy Treatment Plans;a Generalized parallel Prefix Sums Algorithm for Arbitrary Size Arrays;GPU4SNN: GPU-Based Acceleration for Spiking Neural Network Simulations;Ant System Inspired Heuristic Optimization of UAVs Depl

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14th international conference on parallel processing and applied mathematics, PPAM 2022

14th International Conference on Parallel Processing and App...

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14th international conference on parallel processing and applied mathematics, PPAM 2022

ISBN: (纸本)9783031304446

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parallel processing and applied mathematics - 7th international conference, PPAM 2007, Revised Selected Papers

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7th international conference on parallel processing and applied mathematics, PPAM 2007

ISBN: (纸本)3540681051

the proceedings contain 148 papers. the topics discussed include: safety of a session guarantees protocol using plausible clocks;on checkpoint overhead in distributed systems providing session guarantees;performance evolution and power benefits of cluster system utilizing quad-core and dual-core Intel Xeon processors;skip ring topology in FAST failure detection service;inter-processor communication optimization in dynamically reconfigurable embedded parallel systems;an algorithm to improve parallelism in distributed systems using asynchronous calls;analysis of distributed packet forwarding strategies in ad hoc networks;implementation and optimization of dense LU decomposition on the stream processor;an adaptive interface for the efficient computation of the discrete sine transform;and a block-based parallel adaptive scheme for solving the 4D Vlasov equation.

关键词： Ad hoc networks

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On the Incorrect Use of Application Efficiency to Calculate Performance Portability 15th

On the Incorrect Use of Application Efficiency to Calcula...

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15th international conference on parallel processing and applied mathematics, PPAM 2024

作者： Marowka, Ami Parallel Research Lab Petah Tikva Israel

ISBN: (纸本)9783031856990

the emergence of heterogeneity in high-performance computing, which harnesses under one integrated system several platforms of different architectures, also led to the development of innovative cross-platform programming models. Along with the expectation that these models will yield computationally intensive performance, there is demand for them to provide a reasonable degree of performance portability. therefore, new tools and metrics are being developed to measure and calculate the level of performance portability of applications and programming models. the ultimate measure of performance portability is performance efficiency. Performance efficiency refers to the achieved performance as a fraction of some peak theoretical or practical baseline performance. Application efficiency approaches are the most popular and attractive performance efficiency measures among researchers because they are simple to measure and calculate. Unfortunately, the way they are used yields results that do not make sense, while violating one of the basic criteria that defines and characterizes the performance portability metrics. In this paper, we demonstrate how researchers currently use application efficiency to calculate the performance portability of applications and explain why this method deviates from its original definition. then, we show why the obtained results do not make sense and propose practical solutions that satisfy the definition and criteria of performance portability metrics. © the Author(s), under exclusive license to Springer Nature Switzerland AG 2025.

关键词： Application Efficiency Metrics Performance Portability

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parallel processing and applied mathematics - 8th international conference, PPAM 2009, Revised Selected Papers

Parallel Processing and Applied Mathematics - 8th Internatio...

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8th international conference on parallel processing and applied mathematics, PPAM 2009

ISBN: (纸本)3642144020

the proceedings contain 127 papers. the topics discussed include: interval wavelength assignment in all-optical star networks;graphs partitioning: an optimal MIMD queueless routing for BPC-permutations on hypercubes;probabilistic packet relaying in wireless mobile ad hoc networks;graph grammar based Petri nets model of concurrency for self-adaptive hp-finite element method with rectangular elements;numerical solution of the time and rigidity dependent three dimensional second order partial differential equation;hardware implementation of the exponent based computational core for an exchange-correlation potential matrix generation;parallel implementation of conjugate gradient method on graphics processors;fully polynomial time approximation schemes for scheduling divisible loads;semi-online preemptive scheduling: study of special cases;performance based matchmaking on grid;and empirical results for pedestrian dynamics at bottlenecks.

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parallel processing and applied mathematics - 8th international conference, PPAM 2009, Revised Selected Papers

Parallel Processing and Applied Mathematics - 8th Internatio...

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8th international conference on parallel processing and applied mathematics, PPAM 2009

ISBN: (纸本)364214389X

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4th international conference on parallel processing and applied mathematics, PPAM 2001

4th International Conference on Parallel Processing and Appl...

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4th international conference on parallel processing and applied mathematics, PPAM 2001

ISBN: (纸本)9783540437925

the proceedings contain 101 papers. the special focus in this conference is on Grid Architectures, Load Balancing, Performance Analysis, Prediction, parallel Non-numerical Algorithms and parallel Programming. the topics include: Interrupt and cancellation as synchronization methods;applications of virtual data in the LIGO experiment;a parallel system architecture based on dynamically configurable shared memory clusters;simultaneous allocation and scheduling with exclusion and precedence relations algorithm;a greedy approach for a time-dependent scheduling problem;dedicated scheduling of biprocessor tasks to minimize mean flow time;heterogeneous dynamic load balancing with a scheme based on the laplacian polynomial;task scheduling for dynamically configurable multiple SMP clusters based on extended DSC approach;processing time and memory requirements for multi-instalment divisible job processing;estimating execution time of distributed applications;evaluation of parallel programs by measurement of its granularity;the performance of different communication mechanisms and algorithms used for parallelization of molecular dynamics code;benchmarking tertiary storage systems with file fragmentation;fem computations on clusters using different models of parallel programming;parallel skeletons for tabu search method based on search strategies and neighborhood partition;a new parallel approach for multi-dimensional packing problems;three parallel algorithms for simulated annealing;solving the flow shop problem by parallel simulated annealing;automated verification of infinite state concurrent systems;criteria of satisfiability for homogeneous systems of linear Diophantine constraints and irregular and out-of-core parallel computing on clusters.

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13th international conference on parallel processing and applied mathematics, PPAM 2019

13th International Conference on Parallel Processing and App...

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13th international conference on parallel processing and applied mathematics, PPAM 2019

ISBN: (纸本)9783030432218

the proceedings contain 91 papers. the special focus in this conference is on parallel processing and applied mathematics. the topics include: Performance/Energy Aware Optimization of parallel Applications on GPUs Under Power Capping;improving Energy Consumption in Iterative Problems Using Machine Learning;automatic Software Tuning of parallel Programs for Energy-Aware Executions;overview of Application Instrumentation for Performance Analysis and Tuning;Energy-Efficiency Tuning of a Lattice Boltzmann Simulation Using MERIC;Evaluating the Advantage of Reactive MPI-aware Power Control Policies;application-Aware Power Capping Using Nornir;A New Hardware Counters Based thread Migration Strategy for NUMA Systems;alea – Complex Job Scheduling Simulator;studying the Performance of Vector-Based Quicksort Algorithm;makespan Minimization in Data Gathering Networks with Dataset Release Times;overlapping Schwarz Preconditioner for Fourth Order Multiscale Elliptic Problems;MATLAB Implementation of C1 Finite Elements: Bogner-Fox-Schmit Rectangle;simple Preconditioner for a thin Membrane Diffusion Problem;a Numerical Scheme for Evacuation Dynamics;Additive Average Schwarz with Adaptive Coarse Space for Morley FE;application of Multiscale Computational Techniques to the Study of Magnetic Nanoparticle Systems;clique: A parallel Tool for the Molecular Nanomagnets Simulation and Modelling;Modelling of Limitations of BHJ Architecture in Organic Solar Cells;monte Carlo Study of Spherical and Cylindrical Micelles in Multiblock Copolymer Solutions;parallel Tiled Cache and Energy Efficient Code for Zukers RNA Folding;electronic and Optical Properties of Carbon Nanotubes Directed to their Applications in Solar Cells;the MPFI Library: Towards IEEE 17882015 Compliance;softmax and McFaddens Discrete Choice Under Interval (and Other) Uncertainty;experiments with Heterogenous Automata-Based Multi-agent Systems.

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