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SequenceWorld: a genetics database in virtual reality

SequenceWorld: a genetics database in virtual reality

引用

International conference on Information visualisation (iv)

作者： I. Rojdestenski D. Modjeska F. Pettersson M. Rojdestvenskaia P. Gustafsson Dept. of Plant Physiol. Umea Univ. Sweden Department of Computer Science University of Toronto Canada Department of Plant Physiology Umeå University Sweden

Proper information visualization has always been viewed as an important tool for research. Traditionally, however, it was regarded as only a tool, with information content and visualization being analogous to an object and its representation, respectively. These days, visualization is increasingly seen as an integral part of information content, without which data collections may lose significant value. This paper is devoted to applying a new visualization scheme-SequenceWorld-to a genetics database. We view a collection of genetic sequences as a browsable virtual world. Sequences cluster according to their homologies. Their relative position, colour and shape codings offer a direct visual perception of a significant amount of information, which would otherwise be available only via extensive analysis of numerical and textual data. We discuss the usability of SequenceWorld for completing traditional and novel genetic database search tasks, particularly since a holistic view of a complete genome has recently become possible.

关键词： Genetics Virtual reality data visualization visual databases Color Shape visual perception Information analysis Usability Genomics

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Mapping information onto 3D virtual worlds

Mapping information onto 3D virtual worlds

引用

International conference on Information visualisation (iv)

作者： C. Russo Dos Santos P. Gros P. Abel D. Loisel N. Trichaud J.P. Paris Eurecom Institute Sophia-Antipolis France

This paper presents a strategy for automatically mapping information onto visual parameters in the field of three-dimensional (3D) information visualization. The work presented is done in the context of researching how 3D information visualization may help when trying to visualize large volumes of dynamic data. The application field within which this work has been conducted is using 3D information visualization for network monitoring and management. Nonetheless, the framework and mapping strategy is application domain independent. We focus on the process of automatically mapping data values onto graphical parameters, in order to construct 3D virtual worlds that convey network data for network monitoring and management. We present the criteria that are used to find the best mapping and the strategy taken to implement those criteria. We describe our use of visual metaphors and the graphical components that we utilize and we give some examples of different mappings.

关键词： data visualization Cities and towns Telecommunications Computerized monitoring Condition monitoring Taxonomy Testing data analysis Information management User interfaces

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A spreadsheet interface for visualization exploration

A spreadsheet interface for visualization exploration

引用

IEEE conference on visualization

作者： T.J. Jankun-Kelly Kwan-Liu Ma Computer Science Department University of California Davis USA

As the size and complexity of data sets continues to increase, the development of user interfaces and interaction techniques that expedite the process of exploring that data must receive new attention. Regardless of the speed of rendering, it is important to coherently organize the visual process of exploration: this information both grants insights about the data to a user and can be used by collaborators to understand the results. To fulfil these needs, we present a spreadsheet-like interface to data exploration. The interface displays a 2-dimensional window into visualization parameter space which users manipulate as they search for desired results. Through tabular organization and a clear correspondence between parameters and results, the interface eases the discovery, comparison and analysis of the underlying data. Users can utilize operators and the integrated interpreter to further explore and automate the visualization process; using a method introduced in this paper, these operations can be applied to cells in different stacks of the interface. Via illustrations using a variety of data sets, we demonstrate the efficacy of this novel interface.

关键词： data visualization User interfaces Computer science Rendering (computer graphics) Displays Computer graphics Image processing Collaboration Chromium Graphical user interfaces

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Domain visualization for digital libraries

Domain visualization for digital libraries

引用

International conference on Information visualisation (iv)

作者： Chaomei Chen Department of Information Systems and Computing VIVID Research CentreBrunel University Uxbridge UK

Domain visualization aims to reveal the most significant intellectual structure associated with a subject domain. This article illustrates how domain visualization enables novel ways of accessing scientific literature in digital libraries. The domain of computer graphics is visualized based on a citation analysis of articles appeared in the prestigious IEEE Computer Graphics and Applications over 18 years (1982-1999). The derived the high-dimensional domain structure is uncovered through the use of various visualization and animation techniques. Author co-citation maps open up new ways of visual information retrieval. Not only can users explore domain visualizations as a virtual landscape, but also invoke queries directly to a digital library. In this article, the domain visualization is linked to various citation-related information of scientific literature on the Web through NEC's ResearchIndex system.

关键词： Software libraries data visualization Information retrieval Chaos Citation analysis National electric code Information systems Computer graphics Animation Vocabulary

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A classification of multi-sensory metaphors for understanding abstract data in a virtual environment

A classification of multi-sensory metaphors for understandin...

引用

International conference on Information visualisation (iv)

作者： K.V. Nesbitt University of Newcastle Australia

With the advent of virtual environment technology, it is now possible to construct new styles of user interfaces that provide multi-sensory interactions. For example, interfaces can be designed which utilise 3D visual spaces and also provide auditory and haptic feedback. Many information spaces are multivariate, large and abstract in nature. It has been a goal of virtual environments to "widen the human-to-computer bandwidth" and so assist in the interpretation of these spaces by providing models that map different attributes of data to different senses. While this approach has the potential to assist in understanding these large information spaces, what is unclear is how to choose the best metaphors or models to define these mappings between the abstract information and the human sensory channels. This paper takes a look at some issues involved in choosing such multi-sensory metaphors, provides a classification of interactions and examines their application to the task of technical analysis of stock market data.

关键词： Virtual environment User interfaces Humans Space technology Stock markets Haptic interfaces Bandwidth Auditory displays Feedback Application software

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Content-based image visualization

Content-based image visualization

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International conference on Information visualisation (iv)

作者： Chaomei Chen G. Gagaudakis P. Rosin Department of Information Systems and Computing Brunei University Uxbridge UK Department of Computer Science Cardiff University Cardiff UK

The proliferation of content based image retrieval techniques has highlighted the need to understand the relationship between image clustering based on low-level image features and image clustering made by human users. In conventional image retrieval systems, images are typically characterized by a range of features such as color, texture, and shape. However, little is known to what extent these low-level features can be effectively combined with information visualization techniques such that users may explore images in a digital library according to visual similarities. The authors compare and analyze a number of Pathfinder networks of images generated based on such features. Salient structures of images are visualized according to features extracted from color, texture, and shape orientation. Implications for visualizing and constructing hypermedia systems are discussed.

关键词： visualization Image retrieval Shape Content based retrieval Humans Software libraries Image analysis Image generation Feature extraction data mining

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WEAVE: a system for visually linking 3-D and statistical visualizations applied to cardiac simulation and measurement data

WEAVE: a system for visually linking 3-D and statistical vis...

引用

IEEE conference on visualization

作者： D.L. Gresh B.E. Rogowitz R.L. Winslow D.F. Scollan C.K. Yung Department of Biomedical Engineering Johns Hopkins University School of Medicine USA IBM Thomas J. Watson Research Center USA

WEAVE (Workbench Environment for analysis and visual exploration) is an environment for creating interactive visualization applications. WEAVE differs from previous systems in that it provides transparent linking between custom 3D visualizations and multidimensional statistical representations, and provides interactive color brushing between all visualizations. The authors demonstrate how WEAVE can be used to rapidly prototype a biomedical application, weaving together simulation data, measurement data, and 3D anatomical data concerning the propagation of excitation in the heart. These linked statistical and custom three-dimensional visualizations of the heart can allow scientists to more effectively study the correspondence of structure and behavior.

关键词： Joining processes data visualization Heart Medical simulation Biomedical measurements Computational modeling Extraterrestrial measurements Couplings Biomedical engineering Multidimensional systems

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The importance of learning styles in group design work

The importance of learning styles in group design work

引用

Frontiers in Education (FIE) conference

作者： K. Carrizosa S. Sheppard Department of Mechanical Engineering University of Stanford Stanford CA USA

Effective communication between engineering design team members is essential. It depends on the successful transfer (sending, receiving and processing) of information. This information may range from data and facts to creative ideas. Recent work by R. Felder and L. Silverman (1988) has shown that individuals differ from one another in how they prefer to receive and process information. In this paper, we look at the relationship between individuals' preference for receiving information and their methods of sending information. It was initially anticipated that each individual's mode of presenting information would match his or her preferred mode of receiving information, and that this match would result in improved communication. To study the congruency (or incongruency) of how individuals prefer to receive information and how they go about sending information, an experiment was designed and conducted. The experiment consisted of four teams of engineering educators engaged in a design exercise. Their design activities were videotaped. Results based on analysis of the tapes and individual learning styles inventories showed that most participants preferred to receive information visually and engaged in drawing very little during the design exercise. If the definition was expanded to include using drawings, communicative gesturing (i.e. using hand gestures to describe a physical object or action), using hardware and referencing hardware, then visual communication went from comprising an average of 3.8% of the design time to an average of 21.1% of the design time.

关键词： Design engineering Hardware visual communication Space exploration Engineering students Communication effectiveness Information analysis Engineering drawings Process design Chemical engineering

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visual intelligence - Turning data into knowledge

Visual intelligence - Turning data into knowledge

引用

IEEE International conference on Information visualization, iv 1999

作者： Jern, Mikael Advanced Visual Systems and Linkoping University Sweden

ISBN: (纸本)0769502105

visual Intelligence is a process that provides information visualization technology to address the challenge of discovering and exploiting information. For innovative companies, visual Intelligence applications are improving their decision-making capabilities by performing spatial and multivariate visual data analysis and providing rapid access to comprehensible information. This paper examines the issue faced by most business - how to turn data into understandable business knowledge, and make this knowledge accessible to persons who rely on it. The role of information visualization techniques and the visual User Interface (VUI) in the overall visual Intelligence process is assessed. © 1999 IEEE.

关键词： Decision making

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Seeing the text: Program visualization for text analysis in the humanities

Seeing the text: Program visualization for text analysis in ...

引用

conference on visual data exploration and analysis VI

作者： Monger, P Rockwell, G McMaster Univ Hamilton ON L8S 4M1 Canada

ISBN: (纸本)0819431141

In this paper we will discuss a prototype visual programming environment for text applications called Eye-ConTact. Eye-ConTact is modeled on scientific visualization systems such as NAG's Explorer(TM). The user creates a flow chart of how the "experiment" on a text is to be conducted. The map of this flow of data allows the researcher to see the logic of the study of a text and then reproduce such studies with other texts, or alter the analysis. To adapt the visual programming model to the community of textual scholars, the program must be usable and extendable by a community with limited resources for computing, and not entirely convinced that computationally-based research is relevant. The "keep it simple" injunction is crucial in such a project. Furthermore, there are no defined or de facto standards for data formats or data representations in this community. We will discuss the original (1997) prototype. Feedback from demonstrations led to changes to the programming interface, and the underlying text analysis engine, in order to make the former more indicative of the steps in the analysis process, and the latter more portable and extensible. We will discuss the design decisions we made to address these two issues.

关键词： program visualization computer-assisted text analysis

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