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Application-Aware Management of parallel Simulation Collections

acm sigplan NOTICES 2009年第4期44卷 35-44页

作者： Yau, Siu-Man Karamcheti, Vijay Damevski, Kostadin Parker, Steven G. Zorin, Denis NYU Courant Inst Math Sci New York NY 10003 USA Univ Utah Dept Comp Sci Salt Lake City UT 84112 USA

this paper presents a system deployed on parallel clusters to manage a collection of parallel simulations that make up a computational study. It explores how such a system can extend traditional parallel job scheduling and resource allocation techniques to incorporate knowledge specific to the study. Using a UINTAH-based helium gas simulation code (ARCHES) and the SimX system for multi-experiment computational studies, this paper demonstrates that, by using application-specific knowledge in resource allocation and scheduling decisions, one can reduce the run time of a computational study from over 20 hours to under 4.5 hours on a 32-processor cluster, and from almost 11 hours to just over 3.5 hours on a 64-processor cluster.

关键词： Design Performance parallel System High-throughput computing

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Comparability Graph Coloring for Optimizing Utilization of Stream Register Files in Stream Processors

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acm sigplan NOTICES 2009年第4期44卷 111-120页

作者： Yang, Xuejun Wang, Li Xue, Jingling Deng, Yu Zhang, Ying UNSW Programming Languages & Compilers Grp Sch Comp Sci & Engn Sydney NSW Australia

A stream processor executes an application that has been decomposed into a sequence of kernels that operate on streams of data elements. During the execution of a kernel, all streams accessed must be communicated through the SRF (Stream Register File), a non-bypassing software-managed on-chip memory. therefore, optimizing utilization of the SRF is crucial for good performance. the key insight is that the interference graphs formed by the streams in stream applications tend to be comparability graphs or decomposable into a set of multiple comparability graphs. We present a compiler algorithm that can find optimal or near-optimal colorings in stream IGs, thereby improving SRF utilization than the First-Fit bin-packing algorithm, the best in the literature.

关键词： Algorithms Languages Performance Stream processor stream programming comparability graph coloring software-managed cache

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A Comparison of programming Models for Multiprocessors with Explicitly Managed Memory Hierarchies

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acm sigplan NOTICES 2009年第4期44卷 131-140页

作者： Schneider, Scott Yeom, Jae-Seung Rose, Benjamin Linford, John C. Sandu, Adrian Nikolopoulos, Dimitrios S. Virginia Tech Dept Comp Sci Blacksburg VA 24060 USA

On multiprocessors with explicitly managed memory hierarchies (EMM), software has the responsibility of moving data in and out of fast local memories. this task can be complex and error-prone even for expert programmers. Before we can allow compilers to handle the complexity for us, we must identify the abstractions that are general enough to allow us to write applications with reasonable effort, yet specific enough to exploit the vast on-chip memory bandwidth of EMM multi-processors. To this end, we compare two programming models against hand-tuned codes on the STI Cell, paying attention to programmability and performance. the first programming model, Sequoia, abstracts the memory hierarchy as private address spaces, each corresponding to a parallel task. the second, Cellgen, is a new framework which provides OpenMP-like semantics and the abstraction of a shared address spaces divided into private and shared data. We compare three applications programmed using these models against their hand-optimized counterparts in terms of abstractions, programming complexity, and performance.

关键词： Design Languages Cell BE Explicitly Managed Memory Hierarchies programming Models

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Serialization Sets: A Dynamic Dependence-Based parallel Execution Model

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acm sigplan NOTICES 2009年第4期44卷 85-95页

作者： Allen, Matthew D. Sridharan, Srinath Sohi, Gurindar S. Univ Wisconsin Dept Comp Sci Madison WI 53706 USA

this paper proposes a new parallel execution model where programmers augment a sequential program with pieces of code called serializers that dynamically map computational operations into serialization sets of dependent operations. A runtime system executes operations in the same serialization set in program order, and may concurrently execute operations in different sets. Because serialization sets establish a logical ordering on all operations, the resulting parallel execution is predictable and deterministic. We describe the API and design of Prometheus, a C++ library that implements the serialization set abstraction through compile-time template instantiation and a runtime support library. We evaluate a set of parallel programs running on the x86_64 and SPARC-V9 instruction sets and study their performance on multi-core, symmetric multiprocessor, and ccNUMA parallel machines. By contrast with conventional parallel execution models, we find that Prometheus programs are significantly easier to write, test, and debug, and their parallel execution achieves comparable performance.

关键词： Languages Performance parallel computing runtime system serialization sets serializer

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Petascale Computing with Accelerators

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acm sigplan NOTICES 2009年第4期44卷 241-249页

作者： Kistler, Michael Gunnels, John Brokenshire, Daniel Benton, Brad IBM Corp Austin TX 78758 USA IBM Corp Yorktown Hts NY 10598 USA

A trend is developing in high performance computing in which commodity processors are coupled to various types of computational accelerators. Such systems are commonly called hybrid systems. In this paper, we describe our experience developing an implementation of the Linpack benchmark for a petascale hybrid system, the LANL Roadrunner cluster built by IBM for Los Alamos National Laboratory. this system combines traditional x86-64 host processors with IBM PowerXCell (TM) 8i accelerator processors. the implementation of Linpack we developed was the first to achieve a performance result in excess of 1.0 PFLOPS, and made Roadrunner the #1 system on the Top500 list in June 2008. We describe the design and implementation of hybrid Linpack, including the special optimizations we developed for this hybrid architecture. We then present actual results for single node and multi-node executions. From this work, we conclude that it is possible to achieve high performance for certain applications on hybrid architectures when careful attention is given to efficient use of memory bandwidth, scheduling of data movement between the host and accelerator memories, and proper distribution of work between the host and accelerator processors.

关键词： Algorithms Performance Design Accelerators hybrid programming models

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How to build programmable multi-core chips 09

How to build programmable multi-core chips

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proceedings of the 14th acm sigplan symposium on principles and practice of parallel programming

作者： Jack B. Dennis Massachusetts Institute of Technology Cambridge MA USA

ISBN: (纸本)9781605583976

the arrival of multi-core chips has heightened interest in the discipline of parallel programming, a topic that has received much attention for many years. Computer architects have much to learn from sound principles for structuring software and expressing parallel computation. this talk will cover principles for the design of computer systems to support composable parallel software - the idea that any parallel program is usable, without change, as a component of larger parallel programs. By following these principles, a revolution in the ease of building robust and high-performance parallel software can be achieved. the principles suggest interesting directions for computer architecture; the tools to experiment with new architecture concepts are ready and waiting for the savvy and ambitious researcher

关键词： parallel algorithms design performance

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Backtracking-based Load Balancing

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acm sigplan NOTICES 2009年第4期44卷 55-64页

作者： Hiraishi, Tasuku Yasugi, Masahiro Umatani, Seiji Yuasa, Taiichi Kyoto Univ Acad Ctr Comp & Media Studies Kyoto 6068501 Japan Kyoto Univ Grad Sch Informat Kyoto 6068501 Japan

High-productivity languages for parallel computing become more important as parallel environments including multicores become more common. Cilk is such a language. It provides good load balancing for many applications including irregular ones;that is, it keeps all workers busy by creating plenty of "logical" threads and adopting the oldest-first work stealing strategy. this paper proposes a "logical thread"-free framework called Tascell, which achieves a higher performance and supports a wider range of parallel environments including clusters without loss of productivity. A Tascell worker spawns a "real" task only when requested by another idle worker. the worker performs the spawning by temporarily "backtracking" and restoring its oldest task-spawnable state. Our approach eliminates the cost of spawning/managing logical threads. It also promotes the reuse of workspaces and improves the locality of reference since it does not need to prepare a workspace for each concurrently runnable logical thread. Furthermore, Tascell enables elegant and highly-efficient backtrack search algorithms with delayed workspace copying. For instance, our 16-queens problem solver is 1.86 times faster than Cilk on a system with two dual-core processors. Our approach also enables a single program to run in both shared and distributed memory environments with reasonable efficiency and scalability.

关键词： Design Languages Performance load balancing parallel computing backtracking backtrack search

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Formal Verification of Practical MPI Programs

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acm sigplan NOTICES 2009年第4期44卷 261-269页

作者： Vo, Anh Vakkalanka, Sarvani DeLisi, Michael Gopalakrishnan, Ganesh Kirby, Robert M. thakur, Rajeev Univ Utah Sch Comp Salt Lake City UT 84112 USA Argonne Natl Lab Div Math & Comp Sci Argonne IL 60439 USA

this paper considers the problem of formal verification of MPI programs operating under a fixed test harness for safety properties without building verification models. In our approach, we directly model-check the MPI/C source code, executing its interleavings with the help of a verification scheduler. Unfortunately, the total feasible number of interleavings is exponential, and impractical to examine even for our modest goals. Our earlier publications formalized and implemented a partial order reduction approach that avoided exploring equivalent interleavings, and presented a verification tool called ISP. this paper presents algorithmic and engineering innovations to ISP, including the use of OpenMP parallelization, that now enables it to handle practical MPI programs, including: (i) ParMETIS - a widely used hypergraph partitioner, and (ii) MADRE - a Memory Aware Data Re-distribution Engine, both developed outside our group. Over these benchmarks, ISP has automatically verified up to 14K lines of MPI/C code, producing error traces of deadlocks and assertion violations within seconds.

关键词： Verification MPI Message Passing Interface distributed programming model checking dynamic partial order reduction

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Effective Performance Measurement and Analysis of Multithreaded Applications

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acm sigplan NOTICES 2009年第4期44卷 229-239页

作者： Tallent, Nathan R. Mellor-Crummey, John M. Rice Univ Houston TX 77251 USA

Understanding why the performance of a multithreaded program does not improve linearly with the number of cores in a shared-memory node populated with one or more multicore processors is a problem of growing practical importance. this paper makes three contributions to performance analysis of multithreaded programs. First, we describe how to measure and attribute parallel idleness, namely, where threads are stalled and unable to work. this technique applies broadly to programming models ranging from explicit threading (e. g., Pthreads) to higher-level models such as Cilk and OpenMP. Second, we describe how to measure and attribute parallel overhead-when a thread is performing miscellaneous work other than executing the user's computation. By employing a combination of compiler support and post-mortem analysis, we incur no measurement cost beyond normal profiling to glean this information. Using idleness and overhead metrics enables one to pinpoint areas of an application where concurrency should be increased (to reduce idleness), decreased (to reduce overhead), or where the present parallelization is hopeless (where idleness and overhead are both high). third, we describe how to measure and attribute arbitrary performance metrics for high-level multithreaded programming models, such as Cilk. this requires bridging the gap between the expression of logical concurrency in programs and its realization at run-time as it is adaptively partitioned and scheduled onto a pool of threads. We have prototyped these ideas in the context of Rice University's HPCTOOLKIT performance tools. We describe our approach, implementation, and experiences applying this approach to measure and attribute work, idleness, and overhead in executions of Cilk programs.

关键词： Performance Measurement Algorithms Performance Analysis Call Path Profiling Multithreaded programming Models HPCTOOLKIT

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proceedings of the acm sigplan symposium on principles and practice of parallel programming, PPOPP: Chairs' welcome

Proceedings of the ACM SIGPLAN Symposium on Principles and P...

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proceedings of the acm sigplan symposium on principles and practice of parallel programming, PPOPP 2008年 iii页

作者： Chatterjee, Sidhartha Scott, Michael L. IBM Research United States University of Rochester United States

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