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检索条件"任意字段=Proceedings of the 26th ACM SIGPLAN Symposium on Principles and Practice of Parallel Programming"

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Training one DeePMD Model in Minutes: a Step towards Online Learning 24

Training one DeePMD Model in Minutes: a Step towards Online ...

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29th acm sigplan Annual symposium on principles and practice of parallel programming (PPoPP)

作者： Hu, Siyu Zhao, Tong Sha, Qiuchen Li, Enji Meng, Xiangyu Liu, Liping Wang, Lin-Wang Tan, Guangming Jia, Weile Chinese Acad Sci Inst Comp Technol State Key Lab Proc Beijing Peoples R China Univ Chinese Acad Sci Beijing Peoples R China China Univ Petr Qingdao Inst Software Coll Comp Sci & Technol Qingdao Peoples R China Chinese Acad Sci Inst Semicond Beijing Peoples R China

ISBN: (纸本)9798400704352

Neural Network Molecular Dynamics (NNMD) has become a major approach in material simulations, which can speedup the molecular dynamics (MD) simulation for thousands of times, while maintaining ab initio accuracy, thus has a potential to fundamentally change the paradigm of material simulations. However, there are two time-consuming bottlenecks of the NNMD developments. One is the data access of ab initio calculation results. the other, which is the focus of the current work, is reducing the training time of NNMD model. the training of NNMD model is different from most other neural network training because the atomic force (which is related to the gradient of the network) is an important physical property to be fit. Tests show the traditional stochastic gradient methods, like the Adam algorithms, cannot efficiently deploy the multisample minibatch algorithm. As a result, a typical training (taking the Deep Potential Molecular Dynamics (DeePMD) as an example) can take many hours. In this work, we designed a heuristic minibatch quasi-Newtonian optimizer based on Extended Kalman Filter method. An early reduction of gradient and error is adopted to reduce memory footprint and communication. the memory footprint, communication and settings of hyper-parameters of this new method are analyzed in detail. Computational innovations such as customized kernels of the symmetry-preserving descriptor are applied to exploit the computing power of the heterogeneous architecture. Experiments are performed on 8 different datasets representing different real case situations, and numerical results show that our new method has an average speedup of 32.2 compared to the Reorganized Layer-wised Extended Kalman Filter with 1 GPU, reducing the absolute training time of one DeePMD model from hours to several minutes, making it one step toward online training.

关键词： parallel training Molecular dynamics First principle ab initio GPU

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POSTER: Automatic Synthesis of parallel Unix Commands and Pipelines with KUMQUAT 27

POSTER: Automatic Synthesis of Parallel Unix Commands and Pi...

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27th acm sigplan symposium on principles and practice of parallel programming (PPoPP)

作者： Shen, Jiasi Rinard, Martin Vasilakis, Nikos MIT Cambridge MA USA

ISBN: (纸本)9781450392044

We present KUMQUAT, a system for automatically generating data-parallel implementations of UNIX shell commands and pipelines. the generated parallel versions split input streams, execute multiple instantiations of the original pipeline commands to process the splits in parallel, then combine the resulting parallel outputs to produce the final output stream. KumQUAT automatically synthesizes the combine operators, with a domain-specific combiner language acting as a strong regularizer that promotes efficient inference of correct combiners. We present experimental results that show that these combiners enable the effective parallelization of our benchmark scripts.

关键词： Automatic parallelization program synthesis

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Provably Fast and Space-Efficient parallel Biconnectivity 23

Provably Fast and Space-Efficient Parallel Biconnectivity

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28th acm sigplan Annual symposium on principles and practice of parallel programming, PPoPP 2023

作者： Dong, Xiaojun Wang, Letong Gu, Yan Sun, Yihan UC Riverside

ISBN: (纸本)9798400700156

Computing biconnected components (BCC) of a graph is a fundamental graph problem. the canonical parallel BCC algorithm is the Tarjan-Vishkin algorithm, which has O(n + m) optimal work and polylogarithmic span on a graph with n vertices and m edges. However, Tarjan-Vishkin is not widely used in practice. We believe the reason is the space-inefficiency (it uses O(m) extra space). In practice, existing parallel implementations are based on breath-first search (BFS). Since BFS has span proportional to the diameter of the graph, existing parallel BCC implementations suffer from poor performance on large-diameter graphs and can be slower than the sequential algorithm on many real-world graphs. We propose the first p arallel b iconnectivity algorithm (FAST-BCC) that has optimal work, polylogarithmic span, and is space-efficient. Our algorithm creates a skeleton graph based on any spanning tree of the input graph. then we use the connectivity information of the skeleton to compute the biconnectivity of the original input. We carefully analyze the correctness of our algorithm, which is highly non-trivial. We implemented FAST-BCC and compared it with existing implementations, including GBBS, Slota and Madduri's algorithm, and the sequential Hopcroft-Tarjan algorithm. We tested them on a 96-core machine on 27 graphs with varying edge distributions. FAST-BCC is the fastest on all graphs. On average (geometric means), FAST-BCC is 3.1× faster than the best existing baseline on each graph. © 2023 Owner/Author.

关键词： Graphic methods

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POSTER: parallel Algorithms for Masked Sparse Matrix-Matrix Products 27

POSTER: Parallel Algorithms for Masked Sparse Matrix-Matrix ...

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27th acm sigplan symposium on principles and practice of parallel programming (PPoPP)

作者： Milakovic, Srdan Selvitopi, Oguz Nisa, Israt Budimlic, Zoran Buluc, Aydin Rice Univ Houston Houston TX USA Lawrence Berkeley Nat Lab Berkeley Berkeley CA USA AWS Palo Alto Palo Alto CA USA

ISBN: (纸本)9781450392044

Computing the product of two sparse matrices (SpGEMM) is a fundamental operation in various combinatorial and graph algorithms as well as various bioinformatics and data analytics applications for computing inner-product similarities. For an important class of algorithms, only a subset of the output entries are needed, and the resulting operation is known as Masked SpGEMM since a subset of the output entries is considered to be "masked out". In this work, we investigate various novel algorithms and data structures for this rather challenging and important computation, and provide guidelines on how to design a fast Masked-SpGEMM for shared-memory architectures.

关键词： Masked-SpGEMM Sparse Matrix GraphBLAS

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Merchandiser: Data Placement on Heterogeneous Memory for Task-parallel HPC Applications with Load-Balance Awareness 23

Merchandiser: Data Placement on Heterogeneous Memory for Tas...

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28th acm sigplan Annual symposium on principles and practice of parallel programming, PPoPP 2023

作者： Xie, Zhen Liu, Jie Li, Jiajia Li, Dong University of California Argonne National Laboratory Merced United States University of California Merced United States North Carolina State University United States

ISBN: (纸本)9798400700156

the emergence of heterogeneous memory (HM) provides a cost-effective and high-performance solution to memory-consuming HPC applications. Deciding the placement of data objects on HM is critical for high performance. We reveal a performance problem related to data placement on HM. the problem is manifested as load imbalance among tasks in task-parallel HPC applications. the root of the problem comes from being unaware of parallel-task semantics and an incorrect assumption that bringing frequently accessed pages to fast memory always leads to better performance. To address this problem, we introduce a load balance-aware page management system, named Merchandiser. Merchandiser introduces task semantics during memory profiling, rather than being application-agnostic. Using the limited task semantics, Merchandiser effectively sets up coordination among tasks on the usage of HM to finish all tasks fast instead of only considering any individual task. Merchandiser is highly automated to enable high usability. Evaluating with memory-consuming HPC applications, we show that Merchandiser reduces load imbalance and leads to an average of 17.1% and 15.4% (up to 26.0% and 23.2%) performance improvement, compared with a hardware-based solution and an industry-quality software-based solution. © 2023 acm.

关键词： Semantics

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POSTER: Automatic Differentiation of parallel Loops with Formal Methods 27

POSTER: Automatic Differentiation of Parallel Loops with For...

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27th acm sigplan symposium on principles and practice of parallel programming (PPoPP)

作者： Huckelheim, Jan Hascoet, Laurent Argonne Natl Lab Lemont IL 60439 USA Inria Sophia Antipolis Valbonne France

ISBN: (纸本)9781450392044

the accompanying poster to this short paper presents a combination of reverse mode AD and formal methods to enable efficient differentiation of (or backpropagation through) shared-memory parallel code. Compared to the state of the art, our approach can more often avoid the need for atomic updates or private data copies during the parallel derivative computation, even in the presence of unstructured or data-dependent data access patterns. this is achieved by gathering information about the memory access patterns from the input program, which is assumed to be correctly parallelized. this information is then used to build a model of assertions in a theorem prover, which can be used to check the safety of shared memory accesses during the parallel derivative computation.

关键词： Automatic Differentiation OpenMP theorem Proving Formal Methods Data Flow Reversal

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POSTER: LB-HM: Load Balance-Aware Data Placement on Heterogeneous Memory for Task-parallel HPC Applications 27

POSTER: LB-HM: Load Balance-Aware Data Placement on Heteroge...

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27th acm sigplan symposium on principles and practice of parallel programming (PPoPP)

作者： Xie, Zhen Liu, Jie Ma, Sam Li, Jiajia Li, Dong Univ Calif Merced CA USA Coll William Mary Williamsburg WA USA

ISBN: (纸本)9781450392044

the emergence of heterogeneous memory (HM) provides a cost-effective and high-performance solution to memory-consuming HPC applications. However, using HM, wisely migrating data objects on it is critical for high performance. In this work, we introduce a load balance-aware page management system, named LB-HM. LB-HM introduces task semantics during memory profiling, rather than being application-agnostic. Evaluating with a set of memory-consuming HPC applications, we show that we show that LB-HM reduces existing load imbalance and leads to an average of 17.1% and 15.4% (up to 26.0% and 23.2%) performance improvement, compared with a hardware-based solution and an industry-quality software-based solution on Optane-based HM.

关键词： Semantics

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POSTER: Towards OmpSs-2 and OpenACC Interoperation 27

POSTER: Towards OmpSs-2 and OpenACC Interoperation

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27th acm sigplan symposium on principles and practice of parallel programming (PPoPP)

作者： Korakitis, Orestis De Gonzalo, Simon Garcia Guidotti, Nicolas Barreto, Joao Pedro Monteiro, Jose C. Pena, Antonio J. Barcelona Supercomputing Ctr Barcelona Spain Univ Lisbon Inst Super Tecnico INESC ID Lisbon Portugal

ISBN: (纸本)9781450392044

the increasing demand in HPC to utilize accelerators has motivated the development of pragma-based directives to target these devices. OmpSs-2 and OpenACC are both directive-based solutions that allow application programmers to utilize accelerators. the two leverage distinct types of parallelism: task parallelism and data parallelism, respectively. Non-trivial scientific applications can benefit from both types of available parallelism. However, the combination of pragma-based models is difficult to coordinate, as both assume full control and are unaware of each other at runtime. We propose an interoperation mechanism to enable novel composability across pragma-based programming models. We study and propose a clear separation of duties and implement our approach by augmenting the OmpSs-2 programming model, compiler and runtime to support OmpSs-2 + OpenACC programming.

关键词： programming Productivity Data-flow Paradigm Runtime Scheduling Code Transformation parallelism GPU

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proceedings of the acm sigplan symposium on principles and practice of parallel programming, PPOPP

Proceedings of the ACM SIGPLAN Symposium on Principles and P...

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24th acm sigplan symposium on principles and practice of parallel programming, PPoPP 2019

ISBN: (纸本)9781450362252

the proceedings contain 58 papers. the topics discussed include: beyond human-level accuracy: computational challenges in deep learning;throughput-oriented GPU memory allocation;SEP-graph: finding shortest execution paths for graph processing under a hybrid framework on GPU;incremental flattening for nested data parallelism;modular transactions: bounding mixed races in space and time;processing transactions in a predefined order;data-flow/dependence profiling for structured transformations;lightweight hardware transactional memory profiling;provably and practically efficient granularity control;semantics-aware scheduling policies for synchronization determinism;and a round-efficient distributed betweenness centrality algorithm.

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A programming Model for GPU Load Balancing 23

A Programming Model for GPU Load Balancing

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28th acm sigplan Annual symposium on principles and practice of parallel programming, PPoPP 2023

作者： Osama, Muhammad Porumbescu, Serban D. Owens, John D. University of California DavisCA United States

ISBN: (纸本)9798400700156

We propose a GPU fine-grained load-balancing abstraction that decouples load balancing from work processing and aims to support both static and dynamic schedules with a programmable interface to implement new load-balancing schedules. Prior to our work, the only way to unleash the GPU's potential on irregular problems has been to workload-balance through application-specific, tightly coupled load-balancing techniques. With our open-source framework for load-balancing, we hope to improve programmers' productivity when developing irregular-parallel algorithms on the GPU, and also improve the overall performance characteristics for such applications by allowing a quick path to experimentation with a variety of existing load-balancing techniques. Consequently, we also hope that by separating the concerns of load-balancing from work processing within our abstraction, managing and extending existing code to future architectures becomes easier. © 2023 Owner/Author.

关键词： Graphics processing unit

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