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检索条件"任意字段=Proceedings of the first international symposium on Databases in parallel and distributed systems"

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A case study of instant workbench for InterProScan by Knoppix high throughput computing edition 05

A case study of instant workbench for InterProScan by Knoppi...

引用

international symposium on High Performance distributed Computing

作者： F. Konishi S. Ohki Y. Hamano M. Ishii RlKEN GSC Advanced Genome Information Technology Research Group VSN Inc Tokyo Metropolitan Institute of Technology

ISBN: (纸本)9780780390379

We have developed an instant environment for protein sequence profile scanning application by re-mastering Knoppix distribution as high throughput computing edition. This is an integrated environment with bioinformatics applications, parallel file system and scheduler. The integrated environment allows biology researchers to perform scanning applications immediately on their computational pool without any system configuration changed.

关键词： Computer aided software engineering Throughput Bioinformatics File systems Biology computing Proteins Genomics Sequences databases Processor scheduling

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Dynamic adjustment of execution order in real-time databases

Dynamic adjustment of execution order in real-time databases

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Wang, Yongyan Wang, Qiang Wang, Hongan Dai, Guozhong Intelligence Engineering Lab. Institute of Software Chinese Academy of Sciences Beiging 100080 China

ISBN: (纸本)0769521320

Many researches have been devoted to designing appropriate concurrency control algorithms for real-time database systems, which not only satisfy consistency requirements but also meet transaction timing constraints as much as possible. Optimistic concurrency control protocols have the nice properties of being non-blocking and deadlock-free, but they have the problems of late conflict detection and transaction restarts. Although the number of transaction restarts is reduced by dynamic adjustment of serialization order (DASO) in real-time database systems, it still has some unnecessary transaction restarts. In this paper, we first propose a new method called dynamic adjustment of execution order (DAEO) and a new optimistic concurrency control algorithm based on DAEO, which can reduce the number of unnecessary restarts near to zero and outperforms the previous algorithms, and then discuss the experiments and the results.

关键词： Real time systems

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LINPACK performance on a geographically distributed Linux cluster

LINPACK performance on a geographically distributed Linux cl...

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Wang, Peng Turner, George Lauer, Daniel A. Allen, Matthew Simms, Stephen Hart, David Papakhian, Mary Stewart, Craig A. Univ. Info. Technology Services Indiana University Bloomington IN 47408

ISBN: (纸本)0769521320

As the first geographically distributed supercomputer on the Top 500 list, the AVIDD facility of Indiana University ranked 50th in June of 2003. It achieved 1.169 tera-flops running the UNPACK benchmark. In this paper, our work of improving UNPACK performance is reported, and the impact of math kernel, UNPACK problem size and network tuning is analyzed based on the performance model of LINPACK.

关键词： distributed computer systems

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Massively parallel data mining using reconfigurable hardware: Approximate string matching

Massively parallel data mining using reconfigurable hardware...

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Zhang, Qiong Chamberlain, Roger D. Indeck, Ronald S. West, Benjamin M. White, Jason Center for Security Technologies Washington University St. Louis

ISBN: (纸本)0769521320

Data mining is an application that is commonly executed on massively parallel systems, often using clusters with hundreds of processors. With a disk-based data store, however, the data must first be delivered to the processors before effective mining can take place. Here, we describe the prototype of an experimental system that moves processing closer to where the data resides, on the disk, and exploits massive parallelism via reconfigurable hardware to perform the computation. The performance of the prototype is also reported.

关键词： parallel processing systems

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A parallel method for near-circulant penta-diagonal systems

A parallel method for near-circulant penta-diagonal systems

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Garey, L.E. Nemani, S.S. Department of Computer Science University of New Brunswick P. O. Box 5050 Saint John NB E2L 4L5 Canada

ISBN: (纸本)0769521320

In this paper a fast algorithm for solving a large system with an essentially Toeplitz five-band coefficient matrix is presented. The first two and last two rows are influenced by boundary conditions. The five band core of this matrix is factored as the product of tridiagonal matri-ces for the purpose of obtaining a solution of a linear system more efficiently. An error term for the approximate solution is presented following the work by Yan and Chung [12]. An algorithm is developed for solving the two systems and is tested using two multiprocessor machines with different architectures.

关键词： parallel processing systems

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distributed shared memory system based on the Maestro2 high performance cluster network

Distributed shared memory system based on the Maestro2 high ...

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proceedings - ISPDC 2004: Third international symposium on parallel and distributed Computing/HeteroPar '04: Third international Workshop on Algorithms, Models and Tools for parallel Computing on Heterogeneous Networks

作者： Ferreira, Kevin Yamagiwa, Shinichi Sousa, Leonel Aoki, Keiichi Wada, Koichi Campos, Luis Miguel PDM and FC Rua Latino Coelho 87 1050 Lisboa Portugal Institute of Information Sciences and Electronics University of Tsukuba Ibaraki 305-8573 Japan INESC-ID/IST Rua Alves Redol no 9 1000-029 Lisboa Portugal

ISBN: (纸本)0769522106

Cluster computing has become a valid alternative for high performance computing. To fully exploit the computing power of these environments, one must utilize high performance network and protocol technologies, since parallel applications running on clusters require low latency and high throughput. To address this issue, Maestro2 high performance network technology has been developed. parallel applications running on clusters usually use two different known alternatives to share information;message passing or distributed shared memory. Maestro2 already supports a high performance message passing communication system, MMP. This paper describes a first version of a distributed shared memory system based on Maestro2, and a first set of experimental results is presented. © 2004 IEEE.

关键词： distributed computer systems

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A parallel object-oriented application for 3D electromagnetism

A parallel object-oriented application for 3D electromagneti...

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Baduel, Laurent Baude, Françoise Caromel, Denis Delbé, Christian Gama, Nicolas Kasmi, Said El Lanteri, Stéphane INRIA Sophia Antipolis CNRS - I3S Univ. Nice Sophia Antipolis BP 93 06902 Sophia Antipolis Cedex France

ISBN: (纸本)0769521320

Within the trend of object-based distributed computing, we present the design and implementation of a numerical simulation for electromagnetic waves propagation. A sequential Java design and implementation is first presented. Further, a distributed and parallel version is derived from the first, using an active object pattern. In addition, benchmarks are presented on this non embarrassingly parallel application. A first contribution of this paper resides in the sequential object-oriented design that proved to be very modular and extensible;the classes and abstractions are designed to allow both element and volume type methods, furthermore, valid on structured, unstructured, or hybrid meshes. Compared to a Fortran version, the performance of this highly modular version proved to be in the same range. It is also shown how smoothly the sequential version can be distributed, keeping the same structuring and object abstractions, allowing to deal with larger data size. Finally, benchmarks on up to 64 processors compare the performances with respect to sequential and parallel versions, putting that in perspective with a comparable Fortran version.

关键词： parallel processing systems

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distributed algorithms for Partially Clairvoyant dispatchers

Distributed algorithms for Partially Clairvoyant dispatchers

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Subramani, K. Yellajyosula, Kiran Osman, A. LCSEE West Virginia University Morgantown WV CSE University of Minnesota Minneapolis MN

ISBN: (纸本)0769521320

Real-time systems are finding use in complex and dynamic environments such as cruise controllers, life support systems, nuclear reactors, etc., These systems have separate components that sense, control and stabilize the environment towards achieving the mission or target. These consociate components synchronize, compute and control themselves locally or have a centralized component to do the above. distributed computing techniques improve the overall performance and reliability of large real-time systems with spread components. In this paper, we propose and evaluate three distributed dispatching algorithms for Partially Clairvoyant schedules. For a job set of size n, the algorithms have dispatch times of 0(1) per job. In the first algorithm, one processor executes all the jobs and other processors compute the dispatch functions. This scenario simplifies design and is better in situations where one processor controls all the devices. For the other algorithms, all the processors execute jobs assigned to them and compute the dispatch functions in a certain defined order;which is a plausible scenario in distributed controlling. We create various test-cases to test the algorithms due to the unavailability of benchmarks.

关键词： distributed computer systems

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Message routing in multi-segment FTT networks: The isochronous approach

Message routing in multi-segment FTT networks: The isochrono...

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Pedreiras, Paulo Almeida, Luis DET-IEETA University of Aveiro

ISBN: (纸本)0769521320

Real-time distributed applications complexity is steadily increasing. A well-known technique used to manage such complexity consists in decomposing the whole system in different quasi-independent distributed subsystems. Inter-subsystem communication, when necessary, is performed via gateway nodes that filter in and outgoing traffic. For real-time systems, this architecture poses additional design challenges, since it becomes necessary to consider both intra and inter-network message exchanges with real-time constraints. In the work carried out so far, the FTT communication paradigm has been provided with tools for supporting flexible real-time communication on isolated networks. This work presents a first approach to incorporate multi-segment support into the FTT protocol family. Particularly, two approaches are presented, analyzed and compared, which allow breaking end-to-end deadlines into parameters that are local to each one of the interconnected networks.

关键词： distributed computer systems

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An optimal protocol for causally consistent distributed shared memory systems

An optimal protocol for causally consistent distributed shar...

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proceedings - 18th international parallel and distributed Processing symposium, IPDPS 2004 (Abstracts and CD-ROM)

作者： Baldoni, Roberto Milani, Alessia Piergiovanni, Sara Tucci Universita' di Roma La Sapienza Dipartimento di Informatica Via Salaria 113 I-00198 Roma Italy

ISBN: (纸本)0769521320

distributed shared memory (DSM) is one of the main abstraction to implement data-centric information exchanges among a set of processes. Ensuring causal consistency means all operations executed at each process will be compliant to a cause effect relation. This paper first provides an optimality criterion for a protocol P that enforces causal consistency on a DSM. This criterion addresses the number of write operations delayed by P (write delay optimality). Then we present a protocol which is optimal with respect to write delay optimality and we show how previous protocols presented in the literature are not optimal with respect to such a criterion.

关键词： Data storage equipment

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