We present a massively parallel stochastic simulation algorithm (SSA) for reaction-diffusion systems implemented on graphics Processing Units (GPUs). These are designated chips optimized to process a high number of fl...
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We present a massively parallel stochastic simulation algorithm (SSA) for reaction-diffusion systems implemented on graphics Processing Units (GPUs). These are designated chips optimized to process a high number of floating point operations in parallel, rendering them well-suited for a range of scientific high-performance computations. Newer GPU generations provide a high- level programming interface which turns them into General-Purpose graphics Processing Units (GPGPUs). Our SSA exploits GPGPU architecture to achieve a performance gain of two orders of magnitude over the fastest existing implementations on conventional hardware.
The Biological General Repository for Interaction Datasets (BioGRID) representational state transfer (REST) service allows full URL-based access to curated protein and genetic interaction data at the BioGRID database....
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The Biological General Repository for Interaction Datasets (BioGRID) representational state transfer (REST) service allows full URL-based access to curated protein and genetic interaction data at the BioGRID database. Appending URL parameters allows filtering of data by various attributes including gene names and identifiers, PubMed ID and evidence type. We also describe two visualization tools that interface with the REST service, the BiogridPlugin2 for Cytoscape and the BioGRID WebGraph.
Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both gene...
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Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these.
Gobe is a web-based tool for viewing comparative genomic data. It supports viewing multiple genomic regions simultaneously. Its simple text format and flash-based rendering make it an interactive, exploratory research...
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Gobe is a web-based tool for viewing comparative genomic data. It supports viewing multiple genomic regions simultaneously. Its simple text format and flash-based rendering make it an interactive, exploratory research tool. Gobe can be used without installation through our web service, or downloaded and customized with stylesheets and javascript callback functions.
This part of ISO 9241 specifies criteria based on ergonomics factors for the design of physical input devices for interactive systems including keyboards, mice, pucks, joysticks, trackballs, trackpads, tablets ...
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标准号:
BS EN ISO 9241-410-2008+A1-2012
This part of ISO 9241 specifies criteria based on ergonomics factors for the design of physical input devices for interactive systems including keyboards, mice, pucks, joysticks, trackballs, trackpads, tablets and overlays, touch-sensitive screens, styli and light pens, and voice- and gesture-controlled devices. It gives guidance on the design of these devices, taking into consideration the capabilities and limitations of users, and specifies generic design criteria for physical input devices, as well as specific criteria for each type of device. Requirements for the design of products are given either as a result of context-free considerations, or else can be determined based on the specified design criteria for the intended use; such specified criteria generally having been subdivided into task-oriented categories, wherever applicable. EXAMPLE The resolution of a pointing device is given in relation to four levels of index of difficulty for the Fitts test. The required category for the resolution can be determined on the basis of the task characteristics, user population and context of use for the intended application. This part of ISO 9241 does not specify the categories that are appropriate for devices as, according to the concept of usability, a product has no inherent usability. Selecting the category to which a certain property of a device belongs is subject to the design of a product. This part of ISO 9241 is expected to be used by the manufacturers of physical input devices, including product designers and test organizations, in determining the design characteristics of a device for its intended context of use (user population, task, software or environment, etc.). The data genera
CytoscapeRPC is a plugin for Cytoscape which allows users to create, query and modify Cytoscape networks from any programming language which supports XML-RPC. This enables them to access Cytoscape functionality and vi...
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CytoscapeRPC is a plugin for Cytoscape which allows users to create, query and modify Cytoscape networks from any programming language which supports XML-RPC. This enables them to access Cytoscape functionality and visualize their data interactively without leaving the programming environment with which they are familiar.
Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. BLAST comparisons between multiple genomic regions, ranging from single gen...
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Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface. BLAST comparisons between multiple genomic regions, ranging from single genes to whole prokaryote chromosomes, can be generated, visualized and interactively coloured, enabling a rapid transition between analysis and the preparation of publication quality figures.
ISO/IEC 29199-5:2012 provides reference software for ITU-T Rec. T.832 | ISO/IEC 29199-2 as an electronic attachment. The reference software is an integral part of ISO/IEC 29199-5:2012.The purpose of ISO/IEC 29199-5:20...
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标准号:
ISO/IEC 29199-5-2012
ISO/IEC 29199-5:2012 provides reference software for ITU-T Rec. T.832 | ISO/IEC 29199-2 as an electronic attachment. The reference software is an integral part of ISO/IEC 29199-5:2012.
The purpose of ISO/IEC 29199-5:2012 is to provide reference decoder software capable of decoding codestreams (or files) that conform to ITU-T Rec. T.832 | ISO/IEC 29199-2 in a manner that conforms to the decoding process specified in ITU-T Rec. T.832 | ISO/IEC 29199-2;and sample encoder software capable of producing codestreams (or files) that conform to ITU-T Rec. T.832 | ISO/IEC 29199-2.
Time-series and multifactor studies have become increasingly common in metabolomic studies. Common tasks for analyzing data from these relatively complex experiments include identification of major variations associat...
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Time-series and multifactor studies have become increasingly common in metabolomic studies. Common tasks for analyzing data from these relatively complex experiments include identification of major variations associated with each experimental factor, comparison of temporal profiles across different biological conditions, as well as detection and validation of the presence of interactions. Here we introduce MetATT, a web-based tool for time-series and two-factor metabolomic data analysis. MetATT offers a number of complementary approaches including 3D interactive principal component analysis, two-way heatmap visualization, two-way ANOVA, ANOVA-simultaneous component analysis and multivariate empirical Bayes time-series analysis. These procedures are presented through an intuitive web interface. At the end of each session, a detailed analysis report is generated to facilitate understanding of the results.
Summary: Here, we present PRINSEQ for easy and rapid quality control and data preprocessing of genomic and metagenomic datasets. Summary statistics of FASTA (and QUAL) or FASTQ files are generated in tabular and graph...
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Summary: Here, we present PRINSEQ for easy and rapid quality control and data preprocessing of genomic and metagenomic datasets. Summary statistics of FASTA (and QUAL) or FASTQ files are generated in tabular and graphical form and sequences can be filtered, reformatted and trimmed by a variety of options to improve downstream analysis. Availability and Implementation: This open-source application was implemented in Perl and can be used as a stand alone version or accessed online through a user-friendly web interface. The source code, user help and additional information are available at http://***/. Contact: rschmied@***;redwards@***
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