咨询与建议

限定检索结果

文献类型

  • 35 篇 期刊文献
  • 9 篇 会议

馆藏范围

  • 44 篇 电子文献
  • 0 种 纸本馆藏

日期分布

学科分类号

  • 38 篇 工学
    • 28 篇 生物工程
    • 5 篇 电气工程
    • 4 篇 计算机科学与技术...
    • 2 篇 机械工程
    • 1 篇 力学(可授工学、理...
    • 1 篇 光学工程
    • 1 篇 电子科学与技术(可...
    • 1 篇 信息与通信工程
    • 1 篇 测绘科学与技术
    • 1 篇 交通运输工程
  • 32 篇 理学
    • 31 篇 生物学
    • 1 篇 物理学
  • 28 篇 农学
    • 28 篇 作物学
  • 3 篇 医学
    • 3 篇 基础医学(可授医学...

主题

  • 44 篇 blast algorithm
  • 18 篇 sequence alignme...
  • 9 篇 multiple alignme...
  • 6 篇 protein structur...
  • 5 篇 computer softwar...
  • 4 篇 rna structure
  • 4 篇 hidden markov mo...
  • 4 篇 phylogenetic ana...
  • 4 篇 bioinformatics
  • 4 篇 protein domains
  • 4 篇 database searchi...
  • 4 篇 genomics
  • 3 篇 genome annotatio...
  • 3 篇 algorithms
  • 3 篇 fpga
  • 3 篇 protein structur...
  • 2 篇 signal detection
  • 2 篇 phylogenetics
  • 2 篇 enzyme metabolis...
  • 2 篇 trees

机构

  • 1 篇 univ trieste dep...
  • 1 篇 irccs san raffae...
  • 1 篇 harvard univ sch...
  • 1 篇 univ milano bico...
  • 1 篇 j craig venter i...
  • 1 篇 harvard univ joh...
  • 1 篇 univ maryland sc...
  • 1 篇 new york med col...
  • 1 篇 abdus salaam int...
  • 1 篇 russian acad sci...
  • 1 篇 european bioinfo...
  • 1 篇 department of st...
  • 1 篇 whitehead inst c...
  • 1 篇 howard hughes me...
  • 1 篇 naval university...
  • 1 篇 kyonggi univ dep...
  • 1 篇 univ zurich dept...
  • 1 篇 fed rural univ a...
  • 1 篇 magna graecia un...
  • 1 篇 school of comput...

作者

  • 4 篇 eddy sean r.
  • 1 篇 najah said
  • 1 篇 salman muhammad
  • 1 篇 kunik vered
  • 1 篇 blackburn jonath...
  • 1 篇 azeddine zahi
  • 1 篇 thiagarajan math...
  • 1 篇 vipin kizheppatt
  • 1 篇 alam muhammad ma...
  • 1 篇 abadi saeedeh ak...
  • 1 篇 bessen debra e.
  • 1 篇 wang zhongjun
  • 1 篇 maleki ehsan
  • 1 篇 posadas camila
  • 1 篇 de planell-mas e...
  • 1 篇 holmes ian
  • 1 篇 shyr yu
  • 1 篇 notredame cedric
  • 1 篇 wang jing
  • 1 篇 goldberg debra s...

语言

  • 43 篇 英文
  • 1 篇 中文
检索条件"主题词=BLAST algorithm"
44 条 记 录,以下是1-10 订阅
排序:
FindAdapt: A python package for fast and accurate adapter detection in small RNA sequencing
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2024年 第1期20卷 e1011786页
作者: Chen, Hua-Chang Wang, Jing Shyr, Yu Liu, Qi Vanderbilt Univ Med Ctr Dept Biostat Nashville TN 37232 USA Vanderbilt Univ Med Ctr Ctr Quantitat Sci Nashville TN 37232 USA
Adapter trimming is an essential step for analyzing small RNA sequencing data, where reads are generally longer than target RNAs ranging from 18 to 30 bp. Most adapter trimming tools require adapter information as inp... 详细信息
来源: 评论
An overview of bioinformatics courses delivered at the academic level in Italy: Reflections and recommendations from BITS
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2023年 第2期19卷 e1010846-e1010846页
作者: Marangoni, Roberto Bevilacqua, Vitoantonio Cannataro, Mario Mele, Bruno Hay Mauri, Giancarlo Marabotti, Anna Bioinformat Italian Soc BITS Rome Italy Univ Pisa Dept Biol Pisa Italy Polytech Univ Bari Dept Elect & Informat Engn Bary Italy Magna Graecia Univ Catanzaro Dept Med & Surg Sci Catanzaro Italy Univ Naples Federico II Dept Biol Naples Italy Univ Milano Bicocca Dept Informat Syst & Commun Milan Italy Univ Salerno Dept Chem & Biol A Zambelli Fisciano Italy
In Italian universities, bioinformatics courses are increasingly being incorporated into different study paths. However, the content of bioinformatics courses is usually selected by the professor teaching the course, ... 详细信息
来源: 评论
MetaNovo: An open-source pipeline for probabilistic peptide discovery in complex metaproteomic datasets
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2023年 第6期19卷 e1011163-e1011163页
作者: Potgieter, Matthys J. Nel, Andrew J. M. M. Fortuin, Suereta Garnett, Shaun Wendoh, Jerome Tabb, David Mulder, Nicola Blackburn, Jonathan Univ Cape Town Dept Integrat Biomed Sci Computat Biol Div Cape Town South Africa Univ Cape Town Dept Integrat Biomed Sci Div Chem & Syst Biol Cape Town South Africa Univ Cape Town Dept Pathol Div Immunol Cape Town South Africa Stellenbosch Univ Dept Biomed Sci Div Mol Biol & Human Genet Cape Town South Africa Stellenbosch Univ African Microbiome Inst Cape Town South Africa Stellenbosch Univ South African TB Bioinformat Initiat Cape Town South Africa Univ Cape Town Inst Infect Dis & Mol Med Fac Hlth Sci Cape Town South Africa
Author summaryMetaNovo is an open-source software pipeline that integrates existing tools with a custom algorithm to produce targeted protein sequence databases for mass spectrometry metaproteomic analysis as an inter... 详细信息
来源: 评论
The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under chemoheterotrophic, chemoautotrophic, photoheterotrophic, and photoautotrophic growth conditions
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2023年 第8期19卷 e1011371-e1011371页
作者: Tec-Campos, Diego Posadas, Camila Tibocha-Bonilla, Juan D. Thiruppathy, Deepan Glonek, Nathan Zuniga, Cristal Zepeda, Alejandro Zengler, Karsten Univ Autonoma Yucatan Fac Ingn Quim Merida Yucatan Mexico Univ Calif San Diego Dept Pediat La Jolla CA 92093 USA Univ Calif San Diego Bioinformat & Syst Biol Grad Program La Jolla CA USA Univ Calif San Diego Dept Bioengn La Jolla CA 92093 USA Univ Calif San Diego Ctr Microbiome Innovat La Jolla CA 92093 USA
The purple non-sulfur bacterium Rhodopseudomonas palustris is recognized as a critical microorganism in the nitrogen and carbon cycle and one of the most common members in wastewater treatment communities. This bacter... 详细信息
来源: 评论
DPCfam: Unsupervised protein family classification by Density Peak Clustering of large sequence datasets
收藏 引用
PLOS ONE 2022年 第10期17卷 e1010610页
作者: Russo, Elena Tea Barone, Federico Bateman, Alex Cozzini, Stefano Punta, Marco Laio, Alessandro SISSA Trieste Italy Area Sci Pk Trieste Italy Univ Trieste Dept Math & Geosci Trieste Italy European Bioinformat Inst EBI European Mol Biol Lab EMBL Wellcome Genome Campus Hinxton England IRCCS San Raffaele Hosp Ctr Omics Sci Milan Italy IRCCS San Raffaele Sci Inst Div Immunol Transplantat & Infect Dis Unit Immunogenet Leukemia Genom & Immunobiol Milan Italy Abdus Salaam Int Ctr Theoret Phys Trieste Italy
Proteins that are known only at a sequence level outnumber those with an experimental characterization by orders of magnitude. Classifying protein regions (domains) into homologous families can generate testable funct... 详细信息
来源: 评论
HELIOS: High-speed sequence alignment in optics
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2022年 第11期18卷 e1010665页
作者: Maleki, Ehsan Abadi, Saeedeh Akbari Rokn Koohi, Somayyeh Sharif Univ Technol Dept Comp Engn Tehran Iran
In response to the imperfections of current sequence alignment methods, originated from the inherent serialism within their corresponding electrical systems, a few optical approaches for biological data comparison hav... 详细信息
来源: 评论
Constructing benchmark test sets for biological sequence analysis using independent set algorithms
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2022年 第3期18卷 e1009492-e1009492页
作者: Petti, Samantha Eddy, Sean R. Harvard Univ NSF Simons Ctr Math & Stat Anal Biol Cambridge MA USA Howard Hughes Med Inst Chevy Chase MD 20815 USA Harvard Univ Dept Mol & Cellular Biol Cambridge MA 02138 USA Harvard Univ John Paulson Sch Engn & Appl Sci Cambridge MA 02138 USA
Biological sequence families contain many sequences that are very similar to each other because they are related by evolution, so the strategy for splitting data into separate training and test sets is a nontrivial ch... 详细信息
来源: 评论
Integrating unsupervised language model with triplet neural networks for protein gene ontology prediction
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2022年 第12期18卷 e1010793页
作者: Zhu, Yi-Heng Zhang, Chengxin Yu, Dong-Jun Zhang, Yang Nanjing Univ Sci & Technol Sch Comp Sci & Engn Nanjing Peoples R China Univ Michigan Dept Computat Med & Bioinformat Ann Arbor MI 48109 USA Univ Michigan Dept Biol Chem Ann Arbor MI 48109 USA
Accurate identification of protein function is critical to elucidate life mechanisms and design new drugs. We proposed a novel deep-learning method, ATGO, to predict Gene Ontology (GO) attributes of proteins through a... 详细信息
来源: 评论
Remote homology search with hidden Potts models
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2020年 第11期16卷 e1008085-e1008085页
作者: Wilburn, Grey W. Eddy, Sean R. Harvard Univ Dept Phys Cambridge MA 02138 USA Harvard Univ Howard Hughes Med Inst Dept Mol & Cellular Biol Cambridge MA 02138 USA Harvard Univ John A Paulson Sch Engn & Appl Sci Cambridge MA 02138 USA
Author summary Computational homology search and alignment tools are used to infer the functions and evolutionary histories of biological sequences. Most widely used tools for sequence homology searches, such as blast... 详细信息
来源: 评论
Template-based mapping of dynamic motifs in tissue morphogenesis
收藏 引用
PLOS COMPUTATIONAL BIOLOGY 2020年 第8期16卷 e1008049-e1008049页
作者: Stern, Tomer Shvartsman, Stanislav Y. Wieschaus, Eric F. Princeton Univ Dept Mol Biol Princeton NJ 08544 USA Princeton Univ Dept Chem & Biol Engn Princeton NJ 08544 USA Princeton Univ Lewis Sigler Inst Integrat Genom Princeton NJ 08544 USA Simons Fdn Flatiron Inst Ctr Computat Biol New York NY USA
Tissue morphogenesis relies on repeated use of dynamic behaviors at the levels of intracellular structures, individual cells, and cell groups. Rapidly accumulating live imaging datasets make it increasingly important ... 详细信息
来源: 评论