The PC-based dose-calculation system designed for gamma knife radiosurgery introduced in this article delivers desired accuracy and is equipped with a friendly graphical user interface to allow foolproof operations. W...
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The PC-based dose-calculation system designed for gamma knife radiosurgery introduced in this article delivers desired accuracy and is equipped with a friendly graphical user interface to allow foolproof operations. With the ongoing advancement in PC technology, the performance/cost ratio is expected to continue to rise to render more incentive in developing a PC-based dose-calculation system.
Background: Researchers involved in the annotation of large numbers of gene, clone or protein identifiers are usually required to perform a one-by-one conversion for each identifier. When the field of research is one ...
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Background: Researchers involved in the annotation of large numbers of gene, clone or protein identifiers are usually required to perform a one-by-one conversion for each identifier. When the field of research is one such as microarray experiments, this number may be around 30,000. Results: To help researchers map accession numbers and identifiers among clones, genes, proteins and chromosomal positions, we have designed and developed IDconverter and IDClight. They are two user-friendly, freely available web server applications that also provide additional functional information by mapping the identifiers on to pathways, Gene Ontology terms, and literature references. Both tools are high-throughput oriented and include identifiers for the most common genomic databases. These tools have been compared to other similar tools, showing that they are among the fastest and the most up-to-date. Conclusion: These tools provide a fast and intuitive way of enriching the information coming out of high-throughput experiments like microarrays. They can be valuable both to wet-lab researchers and to bioinformaticians.
BackgroundMost analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience.ResultsTREEFINDER is an easy-to-use integrative platform-inde...
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Background
Most analysis programs for inferring molecular phylogenies are difficult to use, in particular for researchers with little programming experience.
Results
TREEFINDER is an easy-to-use integrative platform-independent analysis environment for molecular phylogenetics. In this paper the main features of TREEFINDER (version of April 2004) are described. TREEFINDER is written in ANSI C and Java and implements powerful statistical approaches for inferring gene tree and related analyzes. In addition, it provides a user-friendlygraphicalinterface and a phylogenetic programming language.
Conclusions
TREEFINDER is a versatile framework for analyzing phylogenetic data across different platforms that is suited both for exploratory as well as advanced studies.
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