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检索条件"主题词=Programming language"
1133 条 记 录,以下是281-290 订阅
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Subsegmentation of the Kidney in Experimental MR Images Using Morphology-Based Regions-of-Interest or Multiple-Layer Concentric Objects
Subsegmentation of the Kidney in Experimental MR Images Usin...
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作者: Leili Riazy Bastien Milani João S. Periquito Kathleen Cantow Thoralf Niendorf Menno Pruijm Erdmann Seeliger Andreas Pohlmann
Functional renal MRI promises access to a wide range of physiologically relevant parameters such as blood oxygenation, perfusion, tissue microstructure, pH, and sodium concentration. For quantitative comparison of res... 详细信息
来源: 评论
Proteogenomic Approach for
Proteogenomic Approach for
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作者: Julia Bespyatykh Georgij Arapidi Egor Shitikov
Recent advances in MS/MS technology have made it possible to use proteomic data to predict protein-coding sequences. This approach is called proteogenomics, and it allows to correctly translate start and stop sites an... 详细信息
来源: 评论
Accessible Pipeline for Translational Research Using TCGA: Examples of Relating Gene Mechanism to Disease-Specific Outcomes
Accessible Pipeline for Translational Research Using TCGA: E...
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作者: Anders E. Berglund Ryan M. Putney Jordan H. Creed Garrick Aden-Buie Travis A. Gerke Robert J. Rounbehler
Bioinformatic scientists are often asked to do widespread analyses of publicly available datasets in order to identify genetic alterations in cancer for genes of interest; therefore, we sought to create a set of tools... 详细信息
来源: 评论
Genome-Wide Analysis of Actively Translated Open Reading Frames Using RiboTaper/ORFquant
Genome-Wide Analysis of Actively Translated Open Reading Fra...
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作者: Dermot Harnett Eelco Meerdink Lorenzo Calviello Dominique Sydow Uwe Ohler
Ribosome profiling, or Ribo-seq, provides precise information about the position of actively translating ribosomes. It can be used to identify open reading frames (ORFs) that are translated in a given sample. The Ribo... 详细信息
来源: 评论
Inference of Gene Coexpression Networks from Bulk-Based RNA-Sequencing Data
Inference of Gene Coexpression Networks from Bulk-Based RNA-...
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作者: Alicia T. Lamere
Gene coexpression networks (GCNs) are useful tools for inferring gene functions and understanding biological processes when properly constructed. Traditional microarray analysis is being more frequently replaced by bu... 详细信息
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Bottom-Up Community Proteome Analysis of Saliva Samples and Tongue Swabs by Data-Dependent Acquisition Nano LC-MS/MS Mass Spectrometry
Bottom-Up Community Proteome Analysis of Saliva Samples and ...
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作者: Alexander Rabe Manuela Gesell Salazar Uwe Völker
Analysis using mass spectrometry enables the characterization of metaproteomes in their native environments and overcomes the limitation of proteomics of pure cultures. Metaproteomics is a promising approach to link f... 详细信息
来源: 评论
Statistical Analysis Options for Antibody Array Data
Statistical Analysis Options for Antibody Array Data
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作者: Jingqiao Lu
In this chapter, we introduce the application of R, a statistical programming language in the analysis of antibody array data. We start from a brief introduction of R itself and then cover data filtration and transfor... 详细信息
来源: 评论
PaintSHOP enables the interactive design of transcriptome- and genome-scale oligonucleotide FISH experiments
PaintSHOP enables the interactive design of transcriptome- a...
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作者: Elliot A. Hershberg Conor K. Camplisson Jennie L. Close Sahar Attar Ryan Chern Yuzhen Liu Shreeram Akilesh Philip R. Nicovich Brian J. Beliveau
Fluorescence in situ hybridization (FISH) allows researchers to visualize the spatial position and quantity of nucleic acids in fixed samples. Recently, considerable progress has been made in developing oligonucleotid... 详细信息
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Inference and Analysis of SPIEC-EASI Microbiome Networks
Inference and Analysis of SPIEC-EASI Microbiome Networks
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作者: Henry W. Birt Paul G. Dennis
Network analysis facilitates examination of the interactions between different populations in a community. It can provide a range of metrics describing the social characteristics of each population and emergent struct... 详细信息
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A Protocol for Teaching Basic Next Generation Sequencing (NGS) Analysis Skills to Undergraduate Students Using Bash and R
A Protocol for Teaching Basic Next Generation Sequencing (NG...
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作者: Marco Fondi Giovanni Bacci
Next generation sequencing (NGS) is routinely used to study crucial aspects of biological systems, including differentially expressed genes identification, microbiome taxonomic composition and structure, enrichment of... 详细信息
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