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检索条件"主题词=Protein Data Bank Code"
16 条 记 录,以下是1-10 订阅
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Rigidity analysis of protein biological assemblies and periodic crystal structures
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BMC BIOINFORMATICS 2013年 第Sup18期14卷 S2-S2页
作者: Jagodzinski, Filip Clark, Pamela Grant, Jessica Liu, Tiffany Monastra, Samantha Streinu, Ileana Smith Coll Dept Math Northampton MA 01063 USA Smith Coll Dept Biol Sci Northampton MA 01063 USA Cent Washington Univ Dept Comp Sci Ellensburg WA 98926 USA Smith Coll Dept Comp Sci Northampton MA 01063 USA
Background: We initiate in silico rigidity-theoretical studies of biological assemblies and small crystals for protein structures. The goal is to determine if, and how, the interactions among neighboring cells and sub... 详细信息
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Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis
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BMC GENOMICS 2012年 第1期13卷 309-309页
作者: Chepyshko, Hanna Lai, Chia-Ping Huang, Ming Liu, Jyung-Hurng Shaw, Jei-Fu Far E Univ Dept Food & Beverage Management Tainan 74448 Taiwan Natl Chung Hsing Univ Dept Food Sci & Biotechnol Taichung 402 Taiwan Natl Cheng Kung Univ Inst Biotechnol Tainan 701 Taiwan Natl Chung Hsing Univ Inst Genom & Bioinformat Taichung 40227 Taiwan I Shou Univ Dept Biol Sci & Technol Kaohsiung 84001 Taiwan Acad Sinica Agr Biotechnol Res Ctr Nankang 115 Taiwan
Background: GDSL esterases/lipases are a newly discovered subclass of lipolytic enzymes that are very important and attractive research subjects because of their multifunctional properties, such as broad substrate spe... 详细信息
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Characterisation of a cell wall-anchored protein of Staphylococcus saprophyticus associated with linoleic acid resistance
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BMC MICROBIOLOGY 2012年 第1期12卷 8-8页
作者: King, Nathan P. Sakinc, Tuerkan Ben Zakour, Nouri L. Totsika, Makrina Heras, Begona Simerska, Pavla Shepherd, Mark Gatermann, Soeren G. Beatson, Scott A. Schembri, Mark A. Univ Queensland Sch Chem & Mol Biosci Australian Infect Dis Res Ctr Brisbane Qld 4072 Australia Ruhr Univ Bochum Inst Hyg & Microbiol Dept Med Microbiol D-44780 Bochum Germany Univ Queensland Inst Mol Biosci Brisbane Qld 4072 Australia Univ Med Ctr Freiburg Ctr Infect Dis & Travel Med Freiburg Germany Univ Kent Sch Biosci Canterbury CT2 7NJ Kent England
Background: The Gram-positive bacterium Staphylococcus saprophyticus is the second most frequent causative agent of community-acquired urinary tract infections (UTI), accounting for up to 20% of cases. A common featur... 详细信息
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Creating PWMs of transcription factors using 3D structure-based computation of protein-DNA free binding energies
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BMC BIOINFORMATICS 2010年 第1期11卷 1-15页
作者: Alamanova, Denitsa Stegmaier, Philip Kel, Alexander BIOBASE GmbH D-38304 Wolfenbuettel Germany
Background: Knowledge of transcription factor-DNA binding patterns is crucial for understanding gene transcription. Numerous DNA-binding proteins are annotated as transcription factors in the literature, however, for ... 详细信息
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The protein-DNA Interface database
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BMC BIOINFORMATICS 2010年 第1期11卷 262-262页
作者: Norambuena, Tomas Melo, Francisco Pontificia Univ Catolica Chile Fac Ciencias Biol Dept Mol Genet & Microbiol Santiago Chile
The protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of protein-DNA complexes solved by X-ray crystallography and available at the protein data bank. The database inclu... 详细信息
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3D-interologs: an evolution database of physical protein- protein interactions across multiple genomes
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BMC GENOMICS 2010年 第Sup3期11卷 S7-S7页
作者: Lo, Yu-Shu Chen, Yung-Chiang Yang, Jinn-Moon Natl Chiao Tung Univ Dept Biol Sci & Technol Hsinchu Taiwan Natl Chiao Tung Univ Inst Bioinformat Hsinchu Taiwan Natl Chiao Tung Univ Core Facil Struct Bioinformat Hsinchu Taiwan
Background: Comprehensive exploration of protein-protein interactions is a challenging route to understand biological processes. For efficiently enlarging protein interactions annotated with residue-based binding mode... 详细信息
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Modulation of p53 binding to MDM2: computational studies reveal important roles of Tyr100
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BMC BIOINFORMATICS 2009年 第s15期10卷 1-11页
作者: Dastidar, Shubhra Ghosh Lane, David P. Verma, Chandra S. ASTAR Bioinformat Inst Singapore 138671 Singapore Inst Mol & Cell Biol ASTAR Singapore 138673 Singapore Natl Univ Singapore Dept Biol Sci Singapore 119077 Singapore Nanyang Technol Univ Sch Biol Sci Singapore 639798 Singapore
Background: The tumor suppressor protein p53 is regulated by the ubiquitin ligase MDM2 which down-regulates p53. In tumours with overexpressed MDM2, the p53-MDM2 interaction can be interrupted by a peptide or small mo... 详细信息
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Immunological hotspots analyzed by docking simulations: evidence for a general mechanism in pemphigus vulgaris pathology and transformation
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BMC IMMUNOLOGY 2008年 第1期9卷 30-30页
作者: Tong, Joo Chuan Sinha, Animesh A. Inst Infocomm Res Data Mining Dept Singapore 119613 Singapore Michigan State Univ Coll Human Med Div Dermatol & Cutaneous Sci E Lansing MI 48824 USA
Background: Pemphigus vulgaris (PV) is an acquired autoimmune blistering disorder in which greater than 80% of active patients produce autoantibodies to the desmosomal protein desmogelin 3 (Dsg3). As the disease progr... 详细信息
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Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database
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GENOME BIOLOGY 2007年 第3期8卷 R31-R31页
作者: Tung, Chi-Hua Huang, Jhang-Wei Yang, Jinn-Moon Natl Chiao Tung Univ Inst Bioinformat Hsinchu 30050 Taiwan Natl Chiao Tung Univ Dept Biol Sci & Technol Hsinchu 30050 Taiwan Natl Chiao Tung Univ Core Facil Struct Bioinformat Hsinchu 30050 Taiwan
We present a novel protein structure database search tool, 3D- BLAST, that is useful for analyzing novel structures and can return a ranked list of alignments. This tool has the features of BLAST ( for example, robust... 详细信息
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Prediction of desmoglein-3 peptides reveals multiple shared T-cell epitopes in HLA DR4- and DR6-associated Pemphigus vulgaris
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BMC BIOINFORMATICS 2006年 第5-Sup期7卷 S7-S7页
作者: Tong, Joo Chuan Tan, Tin Wee Sinha, Animesh A. Ranganathan, Shoba Michigan State Univ Coll Human Med Div Dermatol & Cutaneous Sci Ctr Investigat Dermatol E Lansing MI 48824 USA Inst Infocomm Res Singapore 119613 Singapore Natl Univ Singapore Yong Loo Lin Sch Med Dept Biochem Singapore 117597 Singapore Macquarie Univ Dept Chem & Biomol Sci Sydney NSW 2109 Australia Macquarie Univ Biotechnol Res Inst Sydney NSW 2109 Australia
Background: Pemphigus vulgaris (PV) is a severe autoimmune blistering skin disorder that is strongly associated with major histocompatibility complex class II alleles DRBI*0402 and DQBI*0503. The target antigen of PV,... 详细信息
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