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检索条件"主题词=Protein Data Bank File"
28 条 记 录,以下是11-20 订阅
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Domain-based small molecule binding site annotation
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BMC BIOINFORMATICS 2006年 第1期7卷 152-152页
作者: Snyder, KA Feldman, HJ Dumontier, M Salama, JJ Hogue, CWV Blueprint Initiat Toronto ON M5T 1K4 Canada Carleton Univ Dept Biol Ottawa ON K1S 5B6 Canada Mt Sinai Hosp Samuel Lunenfeld Res Inst Toronto ON M5G 1X5 Canada
Background: Accurate small molecule binding site information for a protein can facilitate studies in drug docking, drug discovery and function prediction, but small molecule binding site protein sequence annotation is... 详细信息
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Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials
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BMC BIOINFORMATICS 2010年 第1期11卷 92-92页
作者: Feng, Yaping Kloczkowski, Andrzej Jernigan, Robert L. Iowa State Univ Dept Biochem Biophys & Mol Biol Ames IA 50011 USA Iowa State Univ LH Baker Ctr Bioinformat & Biol Stat Ames IA 50011 USA
Background: Knowledge-based potentials have been widely used in the last 20 years for fold recognition, protein structure prediction from amino acid sequence, ligand binding, protein design, and many other purposes. H... 详细信息
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MolTalk - a programming library for protein structures and structure analysis
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BMC BIOINFORMATICS 2004年 第1期5卷 39-39页
作者: Diemand, AV Scheib, H Univ Lausanne CH-1066 Epalinges Switzerland Swiss Inst Bioinformat CH-1066 Epalinges Switzerland Univ Geneva CH-1211 Geneva 4 Switzerland Ctr Med Univ Geneva Swiss Inst Bioinformat CH-1211 Geneva 4 Switzerland
Background: Two of the mostly unsolved but increasingly urgent problems for modern biologists are a) to quickly and easily analyse protein structures and b) to comprehensively mine the wealth of information, which is ... 详细信息
来源: 评论
Automated functional classification of experimental and predicted protein structures
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BMC BIOINFORMATICS 2006年 第1期7卷 278-278页
作者: Wang, Kai Samudrala, Ram Univ Washington Dept Microbiol Computat Genom Grp Seattle WA 98195 USA
Background: proteins that are similar in sequence or structure may perform different functions in nature. In such cases, function cannot be inferred from sequence or structural similarity. Results: We analyzed experim... 详细信息
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Accessibility and partner number of protein residues, their relationship and a webserver, ContPlot for their display
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BMC BIOINFORMATICS 2009年 第1期10卷 103-103页
作者: Pal, Arumay Bahadur, Ranjit Prasad Ray, Partha Sarathi Chakrabarti, Pinak Bose Inst Dept Biochem Kolkata 700054 India Bose Inst Bioinformat Ctr Kolkata 700054 India
Background: Depending on chemical features residues have preferred locations-interior or exterior-in protein structures, which also determine how many other residues are found around them. The close packing of residue... 详细信息
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The protein-DNA Interface database
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BMC BIOINFORMATICS 2010年 第1期11卷 262-262页
作者: Norambuena, Tomas Melo, Francisco Pontificia Univ Catolica Chile Fac Ciencias Biol Dept Mol Genet & Microbiol Santiago Chile
The protein-DNA Interface database (PDIdb) is a repository containing relevant structural information of protein-DNA complexes solved by X-ray crystallography and available at the protein data bank. The database inclu... 详细信息
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RNA FRABASE 2.0: an advanced web-accessible database with the capacity to search the three-dimensional fragments within RNA structures
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BMC BIOINFORMATICS 2010年 第1期11卷 231-231页
作者: Popenda, Mariusz Szachniuk, Marta Blazewicz, Marek Wasik, Szymon Burke, Edmund K. Blazewicz, Jacek Adamiak, Ryszard W. Polish Acad Sci Inst Bioorgan Chem Poznan Poland Poznan Univ Tech Inst Comp Sci Poznan Poland Poznan Supercomp & Networking Ctr Poznan Poland Univ Nottingham Automated Scheduling Optimisat & Planning Grp Sch Comp Sci Nottingham NG7 2RD England
Background: Recent discoveries concerning novel functions of RNA, such as RNA interference, have contributed towards the growing importance of the field. In this respect, a deeper knowledge of complex three-dimensiona... 详细信息
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STING Millennium Suite: integrated software for extensive analyses of 3d structures of proteins and their complexes
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BMC BIOINFORMATICS 2004年 第1期5卷 107-107页
作者: Higa, RH Togawa, RC Montagner, AJ Palandrani, JCF Okimoto, IKS Kuser, PR Yamagishi, MEB Mancini, AL Neshich, G Empresa Brasileira Pesquisa Agropecuaria Ctr Nacl Pesquisa Agropecuaria Campinas SP Brazil Empresa Brasileira Pesquisa Agropecuaria Embrapa Recursos Genet & Biotecnol Lab Bioinformat Brasilia DF Brazil
Background: The integration of many aspects of protein/DNA structure analysis is an important requirement for software products in general area of structural bioinformatics. In fact, there are too few software package... 详细信息
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Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
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BMC BIOINFORMATICS 2008年 第1期9卷 293-293页
作者: Hsing, Michael Cherkasov, Artem Univ British Columbia Fac Grad Studies Bioinformat Grad Program Vancouver BC V5T 4S6 Canada Univ British Columbia Dept Med Div Infect Dis Fac Med Vancouver BC V5Z 3J5 Canada
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research has shown that the presence of sizable... 详细信息
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PDB-UF: database of predicted enzymatic functions for unannotated protein structures from structural genomics
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BMC BIOINFORMATICS 2006年 第1期7卷 53-53页
作者: von Grotthuss, M Plewczynski, D Ginalski, K Rychlewski, L Shakhnovich, EI Harvard Univ Dept Chem & Biol Chem Cambridge MA 02138 USA BioInfoBank Inst PL-60744 Poznan Poland Adam Mickiewicz Univ Dept Phys Bioinformat Unit PL-61614 Poznan Poland
Background: The number of protein structures from structural genomics centers dramatically increases in the protein data bank (PDB). Many of these structures are functionally unannotated because they have no sequence ... 详细信息
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