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检索条件"主题词=bioinformatics databases"
25 条 记 录,以下是1-10 订阅
排序:
bioinformatics databases for Network Pharmacology Research of Traditional Chinese Medicine: a Systematic Review
Bioinformatics Databases for Network Pharmacology Research o...
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IEEE International Conference on bioinformatics and Biomedicine (IEEE BIBM)
作者: Zhang, La Li, Xiao-peng Lai, Jia-qi Zhang, Lei Guangzhou Univ Chinese Med Affiliated Hosp 2 Guangzhou Guangdong Peoples R China Guangdong Prov Hosp Chinese Med Guangzhou Guangdong Peoples R China Guangzhou Univ Chinese Med Clin Coll 2 Class 2016 Guangzhou Guangdong Peoples R China
Network pharmacology which is based on bioinformatics and system biology knowledge has been employed into the field of Traditional Chinese Medicine (TCM) researches in recent years. In order to summarize current avail... 详细信息
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Graph-DTI: A New Model for Drug-target Interaction Prediction Based on Heterogenous Network Graph Embedding
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CURRENT COMPUTER-AIDED DRUG DESIGN 2024年 第6期20卷 1013-1024页
作者: Qu, Xiaohan Du, Guoxia Hu, Jing Cai, Yongming Guangdong Pharmaceut Univ Sch Med Informat Engn Guangzhou Peoples R China Guangdong Prov Tradit Chinese Med Precis Med Big D Guangzhou Peoples R China
Background In this study, we aimed to develop a new end-to-end learning model called Graph-Drug-Target Interaction (DTI), which integrates various types of information in the heterogeneous network data, and to explore... 详细信息
来源: 评论
MiniDBG: A Novel and Minimal De Bruijn Graph for Read Mapping
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IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND bioinformatics 2024年 第1期21卷 129-142页
作者: Yu, Changyong Zhao, Yuhai Zhao, Chu Jin, Jianyu Mao, Keming Wang, Guoren Northeastern Univ Coll Comp Sci & Engn Shenyang 110819 Peoples R China Beijing Inst Technol Sch Comp Sci & Technol Beijing 100081 Peoples R China
The De Bruijn graph (DBG) has been widely used in the algorithms for indexing or organizing read and reference sequences in bioinformatics. However, a DBG model that can locate each node, edge and path on sequence has... 详细信息
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StLiter: A Novel Algorithm to Iteratively Build the Compacted de Bruijn Graph From Many Complete Genomes
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IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND bioinformatics 2022年 第4期19卷 2471-2483页
作者: Yu, Changyong Mao, Keming Zhao, Yuhai Chang, Cheng Wang, Guoren Northeastern Univ Coll Comp Sci & Engn Shenyang 110819 Peoples R China Northeastern Univ Coll Software Shenyang 110819 Peoples R China Beijing Inst Life Natl Ctr Prot Sci Beijing Beijing Proteome Res Ctr State Key Lab Prote Beijing 102206 Peoples R China Beijing Inst Technol Sch Comp Sci & Technol Beijing 100081 Peoples R China
Recently, the compacted de Bruijn graph (cDBG) of complete genome sequences was successfully used in read mapping due to its ability to deal with the repetitions in genomes. However, current approaches are not flexibl... 详细信息
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An overview of long noncoding RNAs: Biology, functions, therapeutics, analysis methods, and bioinformatics tools
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CELL BIOCHEMISTRY AND FUNCTION 2022年 第8期40卷 800-825页
作者: Jafari-Raddani, Farideh Davoodi-Moghaddam, Zeinab Yousefi, Amir-Mohammad Ghaffari, Seyed H. Bashash, Davood Shahid Beheshti Univ Med Sci Sch Allied Med Sci Dept Hematol & Blood Banking Tehran Iran Univ Tehran Med Sci Shariati Hosp Hematol Oncol & Stem Cell Transplantat Res Ctr Sch Med Tehran Iran
Long noncoding RNAs (lncRNAs) are a diverse class of RNAs whose functions are widespread in all branches of life and have been the focus of attention in the last decade. While a huge number of lncRNAs have been identi... 详细信息
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Exploring the mechanism of artificial selection signature in Chinese indigenous pigs by leveraging multiple bioinformatics database tools
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BMC GENOMICS 2023年 第1期24卷 743-743页
作者: Feng, Xueyan Diao, Shuqi Liu, Yuqiang Xu, Zhiting Li, Guangzhen Ma, Ye Su, Zhanqin Liu, Xiaohong Li, Jiaqi Zhang, Zhe South China Agr Univ Coll Anim Sci State Key Lab Swine & Poultry Breeding Ind Guangdong Prov Key Lab Agroanim Genom & Mol Breedi Guangzhou 510642 Peoples R China Sun Yat Sen Univ Sch Life Sci State Key Lab Biocontrol Guangzhou 510275 Peoples R China
BackgroundChinese indigenous pigs in Yunnan exhibit considerable phenotypic diversity, but their population structure and the biological interpretation of signatures of artificial selection require further investigati... 详细信息
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In silico identification of novel lncRNAs with a potential role in diagnosis of gastric cancer
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JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS 2020年 第7期38卷 1954-1962页
作者: Delshad, Encieh Shamsabadi, Fatemeh T. Bahramian, Shabbou Mehravar, Fatemeh Maghsoudi, Hossein Shafiee, Mohammad Golestan Univ Med Sci Golestan Res Ctr Gastroenterol & Hepatol Gorgan Golestan Iran Golestan Univ Med Sci Fac Adv Technol Med Dept Med Biotechnol Gorgan Golestan Iran Golestan Univ Med Sci Hlth Management & Social Dev Res Ctr Gorgan Golestan Iran Payame Noor Univ Dept Biotechnol Tehran Iran
Gastric cancer (GC) is the second leading cause of cancer-related deaths in the world. Due to the shortage of adequate symptoms in the early stages, it is diagnosed when the tumor has spread to distant organs. Early r... 详细信息
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Natural logic knowledge bases and their graph form
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DATA & KNOWLEDGE ENGINEERING 2020年 129卷 101848-101848页
作者: Andreasen, Troels Bulskov, Henrik Jensen, Per Anker Nilsson, Jurgen Fischer Roskilde Univ Comp Sci Roskilde Denmark Copenhagen Business Sch Management Soc & Commun Copenhagen Denmark Tech Univ Denmark Math & Comp Sci Lyngby Denmark
This paper describes how knowledge bases can be represented in and reasoned with in natural logic. Natural logic is a regimented fragment of natural language possessing a well-defined logical semantics. As such, natur... 详细信息
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Automated detection of records in biological sequence databases that are inconsistent with the literature
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JOURNAL OF BIOMEDICAL INFORMATICS 2017年 71卷 229-240页
作者: Bouadjenek, Mohamed Reda Verspoor, Karin Zobel, Justin Univ Melbourne Dept Comp & Informat Syst Parkville Vic 3053 Australia
We investigate and analyse the data quality of nucleotide sequence databases with the objective of automatic detection of data anomalies and suspicious records. Specifically, we demonstrate that the published literatu... 详细信息
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BioGraph: a web application and a graph database for querying and analyzing bioinformatics resourcesN
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BMC SYSTEMS BIOLOGY 2018年 第Sup5期12卷 98-98页
作者: Messina, Antonio Fiannaca, Antonino La Paglia, Laura La Rosa, Massimo Urso, Alfonso Natl Res Council Italy CNR ICAR Via Ugo La Malfa 153 Palermo Italy
Background: Several online databases provide a large amount of biomedical data of different biological entities. These resources are typically stored in systems implementing their own data model, user interface and qu... 详细信息
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