In the maximum constraint satisfaction problem (MAX CSP), one is given a finite collection of ( possibly weighted) constraints on overlapping sets of variables, and the goal is to assign values from a given finite dom...
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In the maximum constraint satisfaction problem (MAX CSP), one is given a finite collection of ( possibly weighted) constraints on overlapping sets of variables, and the goal is to assign values from a given finite domain to the variables so as to maximize the number ( or the total weight, for the weighted case) of satisfied constraints. This problem is NP-hard in general, and, therefore, it is natural to study how restricting the allowed types of constraints affects the approximability of the problem. In this article, we show that any MAX CSP problem with a finite set of allowed constraint types, which includes all fixed-value constraints (i. e., constraints of the form x = a), is either solvable exactly in polynomial time or else is APX-complete, even if the number of occurrences of variables in instances is bounded. Moreover, we present a simple description of all polynomial-time solvable cases of our problem. This description relies on the well-known algebraic combinatorial property of supermodularity.
We present several new results pertaining to haplotyping. These results concern the combinatorial problem of reconstructing haplotypes from incomplete and/or imperfectly sequenced haplotype fragments. We consider the ...
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We present several new results pertaining to haplotyping. These results concern the combinatorial problem of reconstructing haplotypes from incomplete and/or imperfectly sequenced haplotype fragments. We consider the complexity of the problems Minimum Error Correction (MEC) and Longest Haplotype Reconstruction (LHR) for different restrictions on the input data. Specifically, we look at the gapless case, where every row of the input corresponds to a gapless haplotype-fragment, and the 1-gap case, where at most one gap per fragment is allowed. We prove that MEC is APX-hard in the 1-gap case and still NP-hard in the gapless case. In addition, we question earlier claims that MEC is NP-hard even when the input matrix is restricted to being completely binary. Concerning LHR, we show that this problem is NP-hard and APX-hard in the 1-gap case (and thus also in the general case), but is polynomial time solvable in the gapless case.
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