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Geographic and age variations in mutational processes in colorectal cancer

Nature 2025年 1-11页

作者： Marcos Díaz-Gay Mariya Kazachkova Ammal Abbasi Christopher D. Steele Raviteja Vangara Erik N. Bergstrom Azhar Khandekar Burçak Otlu Ludmil B. Alexandrov Wellington dos Santos Sergey Senkin Behnoush Abedi-Ardekani Ana Carolina de Carvalho Thomas Cattiaux Ricardo Cortez Cardoso Penha Valérie Gaborieau Priscilia Chopard Sandra Perdomo Paul Brennan Sarah Moody Jingwei Wang Stephen Fitzgerald Saamin Cheema Calli Latimer Jon W. Teague Laura Humphreys Michael R. Stratton Christine Carreira Anush Mukeriya David Zaridze Riley Cox Monique Albert Larry Phouthavongsy Steven Gallinger Reza Malekzadeh Ahmadreza Niavarani Marko Miladinov Katarina Erić Sasa Milosavljevic Suleeporn Sangrajrang Maria Paula Curado Samuel Aguiar Rui Manuel Reis Monise Tadin Reis Luis Gustavo Romagnolo Denise Peixoto Guimarães Ivana Holcatova Jaroslav Kalvach Carlos Alberto Vaccaro Tamara Alejandra Piñero Beata Świątkowska Jolanta Lissowska Katarzyna Roszkowska-Purska Antonio Huertas-Salgado Tatsuhiro Shibata Satoshi Shiba Surasak Sangkhathat Taned Chitapanarux Gholamreza Roshandel Patricia Ashton-Prolla Daniel C. Damin Francine Hehn de Oliveira Trevor D. Lawley Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA Department of Bioengineering University of California San Diego La Jolla CA USA Moores Cancer Center University of California San Diego La Jolla CA USA Digital Genomics Group Structural Biology Program Spanish National Cancer Research Center (CNIO) Madrid Spain Biomedical Sciences Graduate Program University of California San Diego La Jolla CA USA Division of Cancer Epidemiology and Genetics National Cancer Institute Bethesda MD USA Department of Health Informatics Graduate School of Informatics Middle East Technical University Ankara Turkey Sanford Stem Cell Institute University of California San Diego La Jolla CA USA Genomic Epidemiology Branch International Agency for Research on Cancer (IARC/WHO) Lyon France Cancer Ageing and Somatic Mutation Wellcome Sanger Institute Cambridge UK Evidence Synthesis and Classification Branch International Agency for Research on Cancer (IARC/WHO) Lyon France Clinical Epidemiology N. N. Blokhin National Medical Research Centre of Oncology Moscow Russia Ontario Tumour Bank Ontario Institute for Cancer Research Toronto Ontario Canada Centre for Biodiversity Genomics University of Guelph Guelph Ontario Canada Lunenfeld-Tanenbaum Research Institute Sinai Health System Toronto Ontario Canada Digestive Oncology Research Center Digestive Disease Research Institute Tehran University of Medical Sciences Tehran Iran Clinic for Digestive Surgery—First Surgical Clinic University Clinical Centre of Serbia Belgrade Serbia Department of Pathology University Clinical Centre of Serbia Belgrade Serbia International Organization for Cancer Prevention and Research Belgrade Serbia National Cancer Institute Bangkok Thailand Department of Epidemiology A. C. Camargo Cancer Center Sao Paulo Brazil Colon Cancer Reference Center A. C. Camargo Cancer Center Sao Paulo Brazil Molecular Oncology Research Center Barretos Cancer Hospital

Incidence rates of colorectal cancer vary geographically and have changed over time1. Notably, in the past two decades, the incidence of early-onset colorectal cancer, which affects individuals below 50 years of age, has doubled in many countries2,3,4,5. The reasons for this increase are unknown. Here we investigate whether mutational processes contribute to geographic and age-related differences by examining 981 colorectal cancer genomes from 11 countries. No major differences were found in microsatellite-unstable cancers, but variations in mutation burden and signatures were observed in the 802 microsatellite-stable cases. Multiple signatures, most with unknown aetiologies, exhibited varying prevalence in Argentina, Brazil, Colombia, Russia and Thailand, indicating geographically diverse levels of mutagenic exposure. Signatures SBS88 and ID18, caused by the bacteria-produced mutagen colibactin6,7, had higher mutation loads in countries with higher colorectal cancer incidence rates. SBS88 and ID18 were also enriched in early-onset colorectal cancers, being 3.3 times more common in individuals who were diagnosed before 40 years of age than in those over 70 years of age, and were imprinted early during colorectal cancer development. Colibactin exposure was further linked toAPCdriver mutations, with ID18 being responsible for about 25% ofAPCdriver indels in colibactin-positive cases. This study reveals geographic and age-related variations in colorectal cancer mutational processes, and suggests that mutagenic exposure to colibactin-producing bacteria in early life may contribute to the increasing incidence of early-onset colorectal cancer.

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Fungal diversity notes 491–602: taxonomic and phylogenetic contributions to fungal taxa

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Fungal Diversity 2017年第2期83卷 1-261页

作者： Saowaluck Tibpromma Kevin D.Hyde Rajesh Jeewon Sajeewa S.N.Maharachchikumbura Jian-Kui Liu D.Jayarama Bhat E.B.Gareth Jones Eric H.C.McKenzie Erio Camporesi Timur S.Bulgakov Mingkwan Doilom AndreLuiz Cabral Monteiro de Azevedo Santiago Kanad Das Patinjareveettil Manimohan Tatiana B.Gibertoni Young Woon Lim Anusha Hasini Ekanayaka Benjarong Thongbai Hyang Burm Lee Jun-Bo Yang Paul M.Kirk Phongeun Sysouphanthong Sanjay K.Singh Saranyaphat Boonmee Wei Dong K.N.Anil Raj K.P.Deepna Latha Rungtiwa Phookamsak Chayanard Phukhamsakda Sirinapa Konta Subashini C.Jayasiri Chada Norphanphoun Danushka S.Tennakoon Junfu Li Monika C.Dayarathne Rekhani H.Perera Yuanpin Xiao Dhanushka N.Wanasinghe Indunil C.Senanayake Ishani D.Goonasekara N.Ide Silva Ausana Mapook Ruvishika S.Jayawardena Asha J.Dissanayake Ishara S.Manawasinghe K.W.Thilini Chethana Zong-Long Luo Kalani Kanchana Hapuarachchi Abhishek Baghela Adriene Mayra Soares Alfredo Vizzini Angelina Meiras-Ottoni Armin Mesic Arun Kumar Dutta Carlos Alberto Fragoso de Souza Christian Richter Chuan-Gen Lin Debasis Chakrabarty Dinushani A.Daranagama Diogo Xavier Lima Dyutiparna Chakraborty Enrico Ercole Fang Wu Giampaolo Simonini Gianrico Vasquez Gladstone Alves da Silva Helio Longoni Plautz Jr Hiran A.Ariyawansa Hyun Lee Ivana Kusan Jie Song Jingzu Sun Joydeep Karmakar Kaifeng Hu Kamal C.Semwal Kasun M.Thambugala Kerstin Voigt Krishnendu Acharya Kunhiraman C.Rajeshkumar Leif Ryvarden Margita Jadan MdIqbal Hosen Michal Miksık Milan C.Samarakoon Nalin N.Wijayawardene Nam Kyu Kim Neven Matocec Paras Nath Singh Qing Tian R.P.Bhatt Rafael JoseVilela de Oliveira Rodham E.Tulloss S.Aamir Saithong Kaewchai Sayali D.Marathe Sehroon Khan Sinang Hongsanan Sinchan Adhikari Tahir Mehmood Tapas Kumar Bandyopadhyay Tatyana YuSvetasheva Thi Thuong Thuong Nguyen Vladimır Antonın Wen-Jing Li Yong Wang Yuvraj Indoliya Zdenko Tkalcec Abdallah M.Elgorban Ali H.Bahkali Alvin M.C.Tang Hong-Yan Su Huang Zhang Itthayakorn Promputtha Jennifer Luangsa-ard Jianchu Xu Jiye Yan Kang Ji-Chuan Marc Stadler Pete Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand World Agroforestry Centre East and Central AsiaKunming 650201YunnanPeople’s Republic of China Mushroom Research Foundation 128 M.3 Ban Pa Deng T.Pa PaeA.Mae TaengChiang Mai 50150Thailand A.M.B.Gruppo Micologico Forlivese“Antonio Cicognani” Via Roma 18Forlı`Italy A.M.B.Circolo Micologico“Giovanni Carini” C.P.314BresciaItaly Societa`per gli Studi Naturalistici della Romagna C.P.144BagnacavalloRAItaly Formerly Department of Botany Goa UniversityTaleigaoGoaIndia No.128/1-J Azad Housing SocietyCurcaGoa VelhaIndia 33 B St.Edwards Road Southsea Hants Hampshire PO53DHUK Landcare Research Manaaki Whenua Private Bag 92170AucklandNew Zealand Department of Biology Faculty of ScienceChiang Mai UniversityChiang Mai 50200Thailand Division of Applied Science College of International EducationThe Hong Kong Baptist UniversityHong Kong SARChina PostGraduate Program in Biology of Fungi Department of MycologyFederal University of PernambucoAv.Nelson Chavess/nRecifePE 50670-420Brazil Institute of Plant and Environment Protection Beijing Academy of Agriculture and Forestry SciencesBeijing 100097People’s Republic of China Environmental Microbiology Lab Division of Food TechnologyBiotechnology&AgrochemistryCollege of Agriculture and Life SciencesChonnam National UniversityYongbong-Dong 300Buk-GuGwangju 61186Korea Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China College of Agriculture and Biological Sciences Dali UniversityDali 671003YunnanPeople’s Republic of China Yunnan Institute of Food Safety Kunming University of Science&TechnologyKunming 650500YunnanPeople’s Republic

This is a continuity of a series of taxonomic and phylogenetic papers on the fungi where materials were collected from many countries,examined and *** addition to extensive morphological descriptions and appropriate asexual and sexual connections,DNA sequence data are also analysed from concatenated datasets to infer phylogenetic relationships and substantiate systematic positions of taxa within appropriate ***ever new species or combinations are proposed,we apply an integrative approach using morphological and molecular data as well as ecological features wherever *** on 112 fungal taxa are compiled in this paper including Biatriosporaceae and Roussoellaceae,Didysimulans ***.,81 new species,18 new host records and new country records,five reference specimens,two new combinations,and three sexual and asexual morph *** new species are Amanita cornelii,***,Angustimassarina alni,***,***,***,***,Ascochyta italica,***,Austroboletus appendiculatus,Barriopsis thailandica,Berkleasmium ariense,Calophoma petasitis,Camarosporium laburnicola,***,***,***,***,Colletotrichum sambucicola,Coprinopsis cerkezii,Cytospora gelida,Dacrymyces chiangraiensis,Didysimulans italica,***,Entodesmium italica,Entoloma magnum,Evlachovaea indica,Exophiala italica,Favolus gracilisporus,Femsjonia monospora,Fomitopsis flabellata,***,Gongronella brasiliensis,Helvella crispoides,Hermatomyces chiangmaiensis,***nae,Hysterium centramurum,Inflatispora caryotae,Inocybe brunneosquamulosa,***,***,Keissleriella cirsii,Lepiota cylindrocystidia,***,***,Lophiotrema guttulata,Marasmius luculentus,Morenoina calamicola,Moelleriella thanathonensis,Mucor stercorarius,Myrmecridium fluviae,Myrothecium septentrionale,Neosetophoma garethjonesii,Nigrograna cangshanensis,Nodulosphaeria guttulatum,***tata,***,Panus subf

关键词： Agaricomycetes Ascomycota Basidiomycota Dacrymycetes Dothideomycetes Eurotiomycetes New combination Mucoromycotina New genus New records New species Pezizomycetes Phylogeny Sordariomycetes Taxonomy

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Addendum: Standardizing global gene expression analysis between laboratories and across platforms

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Nature Methods 2005年第6期2卷

作者： Theodore Bammler Richard P Beyer Fredrico M Farin Terrance J Kavanagh Sean D Quigley Sanchita Bhattacharya Rebecca C Fry Sean Milton Leona D Samson Shirley Xuan Gary A Boorman Michael L Cunningham Abee Boyles Holly K Dressman Jonathan H Freedman Yi-Ju Li David A Schwartz Susan Slifer Marcy C Speer Blair U Bradford Shibing Deng William K Kaufmann Charles M Perou Ivan Rusyn Yan Shi James A Swenberg Ru Tian Roger E Bumgarner Pierre R Bushel Rickie D Fannin Jianying Li Richard S Paules Stella O Sieber Raymond W Tennant Charles J Tucker Kabir Chaturvedi Angel Harper Patrick Hurban Edward K Lobenhofer Ken Phillips Yang Qiu Dongseok Choi Jodi A Lapidus Michael C Humble William A Suk Bennett Van Houten Brenda K Weis Kathleen F Kerr Li-Xuan Qin Li Jing Jung-Lim Shin Robert C Sullivan Helmut Zarbl Michael R Lasarev Valerie S Palmer Peter S Spencer Dean I Sproles Xinfang Lu Srinivasa R Nagalla Jean P O'Malley Patrick Pattee Matthew Rodland Signe A Todd Renae L Malek Department of Environmental and Occupational Health Sciences and the Center for Ecogenetics and Environmental Health University of Washington Box 357234 Seattle 98195-7234 Washington USA Biological Engineering Division Center for Environmental Health Sciences Massachusetts Institute of Technology 77 Massachusetts Avenue 56-235 Cambridge 02139 Massachusetts USA National Toxicology Program National Institute of Environmental Health Sciences 111 TW Alexander Drive Research Triangle Park 27709 North Carolina USA Department of Medicine Duke University Medical Center DUMC 2629 Room 275 MSRB Research Drive Durham 27710 North Carolina USA Lineberger Comprehensive Cancer Center University of North Carolina CB#7295 Chapel Hill 27599 North Carolina USA Department of Microbiology Box 358070 University of Washington Seattle 98195 Washington USA National Center for Toxicogenomics National Institute of Environmental Health Sciences 111 TW Alexander Drive Research Triangle Park 27709 North Carolina USA Icoria Inc. 108 TW Alexander Drive Building 1A Research Triangle Park 27709 North Carolina USA Division of Biostatistics School of Public Health and Preventive Medicine School of Medicine Oregon Health & Science University Portland 97239 Oregon USA Division of Extramural Research and Training National Institute for Environmental Health Sciences 111 TW Alexander Drive Research Triangle Park 27709 North Carolina USA Department of Biostatistics University of Washington Box 357234 Seattle 98195-7234 Washington USA Fred Hutchinson Cancer Research Center 1100 Fairview Ave North Mailstop C1-1015 Seattle 98109 Washington USA Center for Research on Occupational and Environmental Toxicology Oregon Health & Science University Portland 97239 Oregon USA Department of Pediatrics Center for Biomarker Discovery Oregon Health & Science University Portland 97239 Oregon USA The Institute for Genomic Research Rockville Maryland USA

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Corrigendum to “Carbonate delta drift: A new sediment drift type” [Mar. Geol. 401 (2018) 98–111]

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Marine Geology 2018年 406卷 214-215页

作者： Thomas Lüdmann Christian Betzler Gregor P. Eberli Jesús Reolid John J.G. Reijmer Craig R. Sloss Or M. Bialik Carlos A. Alvarez-Zarikian Montserrat Alonso-García Clara L. Blättler Junhua Adam Guo Sébastien Haffen Senay Horozal Mayuri Inoue Luigi Jovane Dick Kroon Luca Lanci Juan Carlos Laya Jeremy R. Young Institute of Geology CEN University of Hamburg Bundesstrasse 55 Hamburg 20146 Germany Department of Marine Geosciences Rosenstiel School of Marine & Atmospheric Science University of Miami Miami FL 33149 USA College of Petroleum Engineering and Geosciences Fahd University of Petroleum and Minerals Dhahran 31261 Saudi Arabia Earth and Environmental Sciences University of Technology Queensland R-Block 317 2 George Street Brisbane Queensland 4001 Australia Dr. Moses Strauss Department of Marine Geosciences The Leon H. Charney School of Marine Sciences University of Haifa Carmel 31905 Israel International Ocean Discovery Program Texas A&M University Discovery Drive College Station TX 77845 USA Instituto Portugues do Mar e da Atmosfera (IPMA) Divisão de Geologia e Georecursos Marinhos Rua Alfredo Magalhães Ramalho 6 1495-006 Portugal Centro de Ciencias do Mar (CCMAR) Universidade do Algarve Faro Portugal Department of Geosciences Princeton University Guyot Hall Princeton NJ 08544 USA Department of Geological Sciences California State University Bakersfield 9001 Stockdale Highway Bakersfield CA 93311 USA Physical Properties Specialist Ecole Nationale Superieure de Geologie Universite de Lorraine 2 rue du Doyen Marcel Roubault Vandoeuvre-les-Nancy 54501 France Petroleum and Marine Research Division Korea Institute of Geoscience & Mineral Resources (KIGAM) Gwahang-no 124 Yuseong-gu Daejeon 305-350 Republic of Korea Graduate School of Natural Science and Technology Okayama University 3-1-1 Tsushima-naka 700-8530 Japan Instituto Oceanográfico da Universidade de São Paulo Praça do Oceanográfico 191 São Paulo SP 05508-120 Brazil School of GeoSciences University of Edinburgh Grant Institute The King's Buildings James Hutton Edinburgh EH9 3FE United Kingdom Istituto di Scienze della Terra Università di Urbino Via S. Chiara 27 Urbino 61029 Italy Department of Geology and Geophysics Texas A&M University Mail Stop 3115 College Station TX 77843-3115 US

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Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: proceedings

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BMC Proceedings 2017年第9期11卷 1-6页

作者： L. Leon Dent Sammed N. Mandape Siddharth Pratap Jianan Dong Jamaine Davis Jennifer A. Gaddy Kofi Amoah Steve Damo Dana R. Marshall Jacob Jones Toni Brandt Gilberto Diaz Qingguo Wang Todd Gary Ashwini Yenamandra Marina Z. Ghattas Marwa Elrakaiby Ramy K. Aziz Hamdallah H. Zedan Moamen Elmassry Marwa ElRakaiby Mariam Lotfy Jarrad Marcel Rania A. Khattab Maha M. Abdelfattah Jack A. Gilbert Pouya Dini Shavahn C. Loux Kirsten E. Scoggin Alejandro Esteller-Vico Edward L. Squires Mats H. T. Troedsson Barry A. Ball Peter Daels Kalpani De Silva Ernest Bailey Joel C. Stephens Theodore S. Kalbfleisch Christine E. Dolin Lauren G. Poole Gavin E. Arteel Michael L. Merchant Daniel W. Wilkey Michelle T. Barati Eric C. Rouchka Richard M. Higashi Teresa W-M Fan Hunter Moseley Andrew N Lane Department of Surgery Meharry Medical College Nashville TN 37208 USA Bioinformatics Core Meharry Medical College Nashville TN 37208 USA Department of Biochemistry and Cancer Biology Meharry Medical College Nashville TN 37208 USA Department of Medicine Vanderbilt University Medical Center Nashville TN 37232 USA Department of Life and Physical Sciences Fisk University Nashville TN 37208 USA Department of Pathology Anatomy and Cell Biology Meharry Medical College Nashville TN 37208 USA College of Computing and Technology Lipscomb University 1 University Park Drive Nashville TN 37204 USA Vanderbilt University Medical Center Nashville TN 37232 USA Office of Research Middle Tennessee State University 1301 East Main St Murfreesboro TN 37132 USA Department of Microbiology and Immunology Faculty of Pharmacy Cairo University Cairo Egypt Department of Biological Sciences Texas Tech University Lubbock TX 79409 USA Clinical Operations Department Ray-Clinical Research Organization Giza Egypt Genomic and Systems Biology Bioscience Division Argonne National Laboratory Argonne IL 60439 USA Research Institute of Ophthalmology Giza Egypt Department of Surgery University of Chicago Chicago IL 60637 USA Microbial Ecology Group Argonne National Laboratory Argonne IL 60439 USA Department of Veterinary Science University of Kentucky Lexington KY 40536 USA Department of Reproduction Faculty of Veterinary Medicine University of Gent Merelbeke Belgium Interdisciplinary Studies Program: Specialization in Bioinformatics University of Louisville Louisville KY 40292 USA Department of Veterinary Science University of Kentucky Lexington KY 40506 USA Genomics GPS Guilford CT 06437 USA Department of Biochemistry and Molecular Genetics School of Medicine University of Louisville Louisville KY 40292 USA Department of Pharmacology & Toxicology University of Louisville Louisville KY 40202 USA Department of Medicine University of Louisville

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Fungal diversity notes 253-366:taxonomic and phylogenetic contributions to fungal taxa

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Fungal Diversity 2016年第3期78卷 1-237页

作者： Guo Jie Li Kevin D.Hyde Rui Lin Zhao Sinang Hongsanan Faten Awad Abdel-Aziz Mohamed A.Abdel-Wahab Pablo Alvarado Genivaldo Alves-Silva Joseph F.Ammirati Hiran A.Ariyawansa Abhishek Baghela Ali Hassan Bahkali Michael Beug D.Jayarama Bhat Dimitar Bojantchev Thitiya Boonpratuang Timur S.Bulgakov Erio Camporesi Marcela CBoro Oldriska Ceska Dyutiparna Chakraborty Jia Jia Chen K.W.Thilini Chethana Putarak Chomnunti Giovanni Consiglio Bao Kai Cui Dong Qin Dai Yu Cheng Dai Dinushani A.Daranagama Kanad Das Monika C.Dayarathne Eske De Crop Rafael J.V.De Oliveira Carlos Alberto Fragoso de Souza JoséIde Souza Bryn T.M.Dentinger Asha J.Dissanayake Mingkwan Doilom E.Ricardo Drechsler-Santos Masoomeh Ghobad-Nejhad Sean P.Gilmore Aristóteles Góes-Neto MichałGorczak Charles H.Haitjema Kalani Kanchana Hapuarachchi Akira Hashimoto Mao Qiang He John K.Henske Kazuyuki Hirayama Maria J.Iribarren Subashini C.Jayasiri Ruvishika S.Jayawardena Sun Jeong Jeon Gustavo H.Jerônimo Ana L.Jesus E.B.Gareth Jones Ji Chuan Kang Samantha C.Karunarathna Paul M.Kirk Sirinapa Konta Eric Kuhnert Ewald Langer Haeng Sub Lee Hyang Burm Lee Wen Jing Li Xing Hong Li Kare Liimatainen Diogo Xavier Lima Chuan Gen Lin Jian Kui Liu Xings Zhong Liu Zuo Yi Liu J.Jennifer Luangsa-ard Robert Lücking H.Thorsten Lumbsch Saisamorn Lumyong Eduardo M.Leaño Agostina V.Marano Misato Matsumura Eric H.C.McKenzie Suchada Mongkolsamrit Peter E.Mortimer Thi Thuong Thuong Nguyen Tuula Niskanen Chada Norphanphoun Michelle A.O’Malley Sittiporn Parnmen Julia Pawłowska Rekhani H.Perera Rungtiwa Phookamsak Chayanard Phukhamsakda Carmen L.A.Pires-Zottarelli Olivier Raspé Mateus A.Reck Sarah C.O.Rocha AndréL.C.M.Ade Santiago Indunil C.Senanayake Ledo Setti Qiu Ju Shang Sanjay K.Singh Esteban B.Sir Kevin V.Solomon Jie Song Prasert Srikitikulchai Marc Stadler Satinee Suetrong Hayato Takahashi Takumasa Takahashi Kazuaki Tanaka Li Ping Tang Kasun M.Thambugala Donnaya Thanakitpipattana Michael K.Theodorou Benjarong Thongbai Tuksaporn Thummarukcharoen Qing Tian Saowaluck Tibpromma Annemieke State Key Laboratory of Mycology Institute of MicrobiologyChinese Academy of SciencesNo 31st West Beichen RoadChaoyang DistrictBeijing 100101People’s Republic of China Centre of Excellence in Fungal Research and School of Science Mae Fah Luang UniversityChiang Rai 57100Thailand Key Laboratory for Plant Diversity and Biogeography of East Asia Kunming Institute of BotanyChinese Academy of ScienceKunming 650201YunnanPeople’s Republic of China Department of Botany and Microbiology College of ScienceKing Saud UniversityP.O.Box:2455Riyadh 1145Saudi Arabia Department of Botany and Microbiology Faculty of ScienceSohag UniversitySohag 82524Egypt ALVALAB C/La Rochela nº47E-39012 SantanderSpain Micolab Programa de Pós-Graduação em Biologia de FungosAlgas e PlantasDepartamento de BotânicaUniversidade Federal de Santa CatarinaCampus Universitário TrindadeCEP:88040-900 FlorianópolisSanta CatarinaBrazil Department of Biology University of WashingtonBox 351800SeattleWA 98195-1800USA Guizhou Key Laboratory of Agricultural Biotechnology Guizhou Academy of Agricultural SciencesGuiyang 550006GuizhouPeople’s Republic of China National Fungal Culture Collection of India(NFCCI) Biodiversity and Palaeobiology GroupMACS’Agharkar Research InstituteG.G.Agarkar RoadPune 411004India PO Box 116 HusumWA 98623-0116USA Formerly Department of BotanyGoa UniversityGoaIndia No.128/1-J Azad Housing SocietyCurcaP.O.Goa Velha 403108India *** 345 Shipwatch LaneHerculesCA 94547USA Microbe Interaction Laboratory(BMIT) BIOTECNational Science and Technology Development Agency(NSTDA)113 Thailand Science ParkThanon PhahonyothinTombon Khlong NuengAmphoeKhlong LuangPathum Thani 12120Thailand Academy of Biology and Biotechnology Southern Federal UniversityRostov-on-Don 344090Rostov regionRussia A.M.B.Gruppo Micologico Forlivese BAntonio“Cicognani” Via Roma Forlì Italy 18 A.M.B.Circolo Micologico“Giovanni Carini”C.P.314BresciaItaly Societàper gli Studi Naturalistici della Romagna C.P.144Bagnacavallo

Notes on 113 fungal taxa are compiled in this paper,including 11 new genera,89 new species,one new subspecies,three new combinations and seven reference *** geographic and taxonomic range of fungal taxa are *** the Ascomycota the new genera Angustospora(Testudinaceae),Camporesia(Xylariaceae),Clematidis,Crassiparies(Pleosporales genera incertae sedis),Farasanispora,Longiostiolum(Pleosporales genera incertae sedis),Multilocularia(Parabambusicolaceae),Neophaeocryptopus(Dothideaceae),Parameliola(Pleosporales genera incertae sedis),and Towyspora(Lentitheciaceae)are *** introduced species are Angustospora nilensis,Aniptodera aquibella,Annulohypoxylon albidiscum,Astrocystis thailandica,Camporesia sambuci,Clematidis italica,Colletotrichum menispermi,***,Comoclathris pimpinellae,Crassiparies quadrisporus,Cytospora salicicola,Diatrype thailandica,Dothiorella rhamni,Durotheca macrostroma,Farasanispora avicenniae,Halorosellinia rhizophorae,Humicola koreana,Hypoxylon lilloi,Kirschsteiniothelia tectonae,Lindgomyces okinawaensis,Longiostiolum tectonae,Lophiostoma pseudoarmatisporum,Moelleriella phukhiaoensis,***,Mucoharknessia anthoxanthi,Multilocularia bambusae,Multiseptospora thysanolaenae,Neophaeocryptopus cytisi,Ocellularia arachchigei,***,Ochronectria thailandica,Ophiocordyceps karstii,Parameliola acaciae,***,Parastagonospora cumpignensis,Pseudodidymosphaeria phlei,Polyplosphaeria thailandica,Pseudolachnella brevifusiformis,Psiloglonium macrosporum,Rhabdodiscus albodenticulatus,Rosellinia chiangmaiensis,Saccothecium rubi,Seimatosporium pseudocornii,***,Sigarispora ononidis and Towyspora *** combinations are provided for Eutiarosporella dactylidis(sexual morph described and illus trated)and Pseudocamarosporium ***,illustrations and/or reference specimens are designated for Aposphaeria corallinolutea,Cryptovalsa ampelina,Dothiorella vidmadera,Ophiocordyceps formosana,P

关键词： Ascomycota Basidiomycota Neocallimastigomycota Oomycota.Zygomycota Phylogeny Taxonomy New genus New species

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Physics performance of the large-sized telescope prototype of the cherenkov telescope array

arXiv

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arXiv 2021年

作者： López-Coto, R. Moralejo, A. Artero, M. Baquero, A. Bernardos, M. Contreras, J.L. Di Pierro, F. García, E. Kerszberg, D. López-Moya, M. MasAguilar, A. Morcuende, D. Noethe, M. Nozaki, S. Ohtani, Y. Priyadarshi, C. Suda, Y. Vuillaume, T. Abe, H. Aguasca, A. Agudo, I. Antonelli, L.A. Aramo, C. Armstrong, T. Artero, M. Asano, K. Ashkar, H. Aubert, P. Baktash, A. Bamba, A. Larriva, A. Baquero Baroncelli, L. de Almeida, U. Barres Barrio, J.A. Batkovic, I. González, J. Becerra Bernardos, M.I. Berti, A. Biederbeck, N. Bigongiari, C. Blanch, O. Bonnoli, G. Bordas, P. Bose, D. Bulgarelli, A. Burelli, I. Buscemi, M. Cardillo, M. Caroff, S. Carosi, A. Cassol, F. Cerruti, M. Chai, Y. Cheng, K. Chikawa, M. Chytka, L. Contreras, J.L. Cortina, J. Costantini, H. Dalchenko, M. de Angelis, A. de Bony de Lavergne, M. Deleglise, G. Delgado, C. Delgado Mengual, J. della Volpe, D. Depaoli, D. Di Venere, L. Díaz, C. Dominik, R.M. Dominis Prester, D. Donini, A. Dorner, D. Doro, M. Elsässer, D. Emery, G. Escudero, J. Fiasson, A. Foffano, L. Fonseca, M.V. Coromina, L. Freixas Fukami, S. Fukazawa, Y. Garcia, E. Garcia López, R. Giglietto, N. Giordano, F. Gliwny, P. Godinovic, N. Green, D. Grespan, P. Gunji, S. Hackfeld, J. Hadasch, D. Hahn, A. Hassan, T. Hayashi, lo K. Heckmann, L. Heller, M. Llorente, J. Herrera Hirotani, K. Hoffmann, D. Horns, D. Houles, J. Hrabovsky, M. Hrupec, D. Hui, D. Hütten, M. Inada, T. Inome, Y. Iori, M. Ishio, K. Iwamura, Y. Jacquemont, M. Martinez, I. Jimenez Jouvin, L. Jurysek, J. Kagaya, M. Karas, V. Katagiri, H. Kataoka, J. Kerszberg, D. Kobayashi, Y. Kong, A. Kubo, H. Kushida, J. Lamanna, G. Lamastra, A. Le Flour, T. Longo, F. López-Coto, R. López-Moya, M. López-Oramas, A. Luque-Escamilla, P.L. Majumdar, P. Makariev, M. Mandat, D. Manganaro, M. Mannheim, K. Mariotti, M. Marquez, P. Marsella, G. Martí, J. Martinez, O. Martínez, G. Martínez, M. Marusevec, P. Mas, A. Maurin, G. Mazin, D. Guillen, E. Mestre Micanovic, S. Istituto Nazionale di Fisica Nucleare Sezione di Padova PadovaI-35131 Italy Instituto de Astrofísica de Andalucía CSIC Granada18080 Spain 08193 Spain IPARCOS Department of EMFTEL Universidad Complutense de Madrid MadridE-28040 Spain Università degli Studi di Padova Via Marzolo 8 Padova35131 Italy INFN Sezione di Torino via P. Giuria 1 Torino10125 Italy LAPP Univ. Grenoble Alpes Univ. Savoie Mont Blanc CNRS-IN2P3 Annecy74000 France 9 Chemin de Bellevue - BP 110 Annecy Cedex74941 France Department of Physics TU Dortmund University Otto-Hahn-Str. 4 Dortmund44221 Germany Division of Physics and Astronomy Graduate School of Science Kyoto University Sakyoku Kyoto606-8502 Japan Institute for Cosmic Ray Research University of Tokyo 5-1-5 Kashiwa-no-ha Chiba Kashiwa277-8582 Japan Max-Planck-Institut für Physik München80805 Germany Institute for Cosmic Ray Research University of Tokyo Departament de Física Quàntica i Astrofísica Institut de Ciències del Cosmos Universitat de Barcelona IEEC-UB Instituto de Astrofísica de Andalucía-CSIC INAF - Osservatorio Astronomico di Roma INFN Sezione di Napoli Aix Marseille Univ CNRS/IN2P3 CPPM Barcelona Institute of Science and Technology IRFU CEA Université Paris-Saclay LAPP Univ. Grenoble Alpes Univ. Savoie Mont Blanc CNRS-IN2P3 Annecy France Universität Hamburg Institut für Experimentalphysik Graduate School of Science University of Tokyo EMFTEL department IPARCOS Universidad Complutense de Madrid INAF - Osservatorio di Astrofisica e Scienza dello spazio di Bologna Centro Brasileiro de Pesquisas Físicas INFN Sezione di Padova Università degli Studi di Padova Instituto de Astrofísica de Canarias Departamento de Astrofísica Universidad de La Laguna Max-Planck-Institut für Physik Department of Physics TU Dortmund University Saha Institute of Nuclear Physics INFN Sezione di Trieste Università degli Studi di Udine INFN Sezione di Catania University of Geneva Département de physique nucléaire et corpusculaire P

The Large-Sized Telescope (LST) prototype of the future Cherenkov Telescope Array (CTA) is located at the Northern site of CTA, on the Canary Island of La Palma. It is designed to provide optimal performance in the lowest part of the energy range covered by CTA, observing gamma rays down to energies of tens of GeV. The LST prototype started performing astronomical observations in November 2019 during the commissioning of the telescope and it has been taking data since then. In this contribution, we will present the tuning of the characteristics of the telescope in the Monte Carlo (MC) simulations to describe the data obtained, the estimation of its angular and energy resolution, and an evaluation of its sensitivity, both with simulations and with observations of the Crab Nebula. © 2021, CC BY.

关键词： Telescopes

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Abstracts of presentations on plant protection issues at The Xth International Congress of Virology - August 11-16, 1996 - Binyanei haOoma, Jerusalem, Israel - Part 3 (final part)

引用

PHYTOPARASITICA 1998年第1期26卷 67-90页

作者： [Anonymous] Dept. of Virus Research John Innes Centre Colney UK Dept. of Field and Vegetable Crops The Hebrew University of Jerusalem Faculty of Agricultural Food and Environmental Quality Sciences Rehovot Israel Station de Recherches Grandes Cultures INRA Colmar France Inst. de Biologie Moléculaire des Plantes du CNRS Strasbourg France DLO Research Institute for Plant Protection Wageningen The Netherlands Dept. of Biological Science University of Lagos Lagos Nigeria Dept. of Virology Agricultural University Wageningen The Netherlands Dept. de Biología de Plantas Centra de Investigaciones Biológicas CSIC Madrid Spain Dept. of Plant Protection National Agriculture Research Center Tsukuba lbaraki Tohoku National Agricultural Experiment Station Morioka Iwate Kyushu National Agricultural Experiment Station Kumamoto Japan Dept. of Virology ARO The Volcani Center BetDagan Israel Institut Jacques Monod CNRS Université Paris VII Paris France Dept. of Virology ARO The Volcani Center Bet Dagan Israel Scripps Institute San Diego USA Dept. of Plant Pathology University of Kentucky Lexington USA Inst. of Molecular Plant Sciences Gorlaeus Laboratories Leiden University RA Leiden The Netherlands Inst. de Biología Molecular y Celular de Plantas Valencia Spain Scottish Crop Research Inst. Invergowrie Dundee UK Depts. of Plant Pathology Univ. of Georgia Coastal Plain Exp. Station Tifton Depts. Entomology Univ. of Georgia Coastal Plain Exp. Station Ttfton Dept. of Plant Pathology Oklahoma State University Stillwater USA Depts. of Coop. Ext. Service Univ. of Georgia Coastal Plain Exp. Station Ttfton Plant Science Dept. Univ. of British Columbia Vancouver Agriculture and Agri-Food Canada Pacific Agric. Res. Centre Vancouver Canada Deutsche Sammlung von Mikroorganismen und Zellkultur (DSMZ) Abt. Pflanzenviren and Biologische Bundesanstalt für Land- und Forstwirtschaft Inst. für Biochemie und Pflanzenvirologie Braunschweig Germany Inst. of Molecular Biology and Biotec

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Marine mammal noise-exposure criteria: Initial scientific recommendations

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Bioacoustics 2008年第1-3期17卷 273-275页

作者： Southall, Brandon L. Bowles, Ann E. Ellison, William T. Finneran, James J. Gentry, Roger L. Greene, Charles R. Kastak, David Ketten, Darlene R. Miller, James H. Nachtigall, Paul E. Richardson, W. John Thomas, Jeanette A. Tyack, Peter L. Marine Ecosystems Division Ocean Acoustics Program National Oceanic and Atmospheric Administration (NOAA) National Marine Fisheries Service Office of Science and Technology Silver Spring MD 20910-6233 1315 East-West Highway United States Long Marine Laboratory University of California Santa Cruz Santa Cruz CA 95060 100 Shaffer Road United States Hubbs-Sea World Research Institute San Diego CA 92109 2595 Ingraham Street United States Marine Acoustics Inc. Middletown RI 02842 809 Aquidneck Avenue United States U. S. Navy Marine Mammal Program Space and Naval Warfare Systems Center San Diego San Diego CA 92152-5000 53560 Hull Street United States ProScience Consulting LLC Dickerson MD 20842-0177 22331 Mt. Ephraim Road United States Greeneridge Sciences Inc. Santa Barbara CA 93110 4512 Via Huerto United States Woods Hole Oceanographic Institution Woods Hole MA 02543 United States Department of Otology and Laryngology Harvard Medical School Boston MA 02114 United States Department of Ocean Engineering University of Rhode Island Narragansett RI 02882 South Ferry Road United States Hawaii Institute of Marine Biology Kane'ohe HI 96744 P.O. Box 1346 United States LGL Ltd. Environmental Research Associates King City ON L7B 1A6 P.O. Box 280 22 Fisher Street Canada Department of Biological Sciences Western Illinois University Quad Cities Moline IL 61265 3561 60th Street United States

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An Optical Gamma-Ray Burst Catalogue with Measured Redshift PART I: Data Release of 535 Gamma-Ray Bursts and Colour Evolution

arXiv

引用

arXiv 2024年

作者： Dainotti, M.G. De Simone, B. Mohideen Malik, R.F. Pasumarti, V. Levine, D. Saha, N. Gendre, B. Kido, D. Watson, A.M. Becerra, R.L. Belkin, S. Desai, S. Pedreira, A.C.C.D.E.S. Das, U. Li, L. Oates, S.R. Cenko, S.B. Pozanenko, A. Volnova, A. Hu, Y.-D. Castro-Tirado, A.J. Orange, N.B. Moriya, T.J. Fraija, N. Niino, Y. Rinaldi, E. Butler, N.R. González, J.D.J.G. Kutyrev, A.S. Lee, W.H. Prochaska, X. Ramirez-Ruiz, E. Richer, M. Siegel, M.H. Misra, K. Rossi, A. Lopresti, C. Quadri, U. Strabla, L. Ruocco, N. Leonini, S. Conti, M. Rosi, P. Ramirez, L.M.T. Zola, S. Jindal, I. Kumar, R. Chan, L. Fuentes, M. Lambiase, G. Kalinowski, K.K. Jamal, W. Division of Science National Astronomical Observatory of Japan 2-21-1 Osawa Mitaka Tokyo181-8588 Japan Shonankokusaimura Hayama Miura District Kanagawa240-0115 Japan Space Science Institute 4765 Walnut St Ste B BoulderCO80301 United States Nevada Center for Astrophysics University of Nevada 4505 Maryland Parkway Las VegasNV89154 United States Bay Environmental Institute P.O. Box 25 Moffett FieldCA United States Fisciano132 I-84084 Italy INFN Sezione di Napoli Gruppo Collegato di Salerno Italy Department of Physics University of Rome "Tor Vergata" Italy Department of Astronomy University of Belgrade Serbia Department of Physics Indian Institute of Technology Hyderabad Telangana Kandi502284 India Department of Astronomy California Institute of Technology PasadenaCA91125 United States Department of Physical Science Indian Institute of Science Education and Research Kolkata Mohanpur741246 India Mönchhofstr. 12-14 Heidelberg69120 Germany 35 Stirling Highway Perth6009 Australia Department of Physics Faculty of Science The University of Tokyo Japan Instituto de Astronomia Universidad Nacional Autónoma de México Circuito Exterior C.U. A. Postal 70-264 CDMX04510 Mexico Instituto de Ciencias Nucleares Universidad Nacional Autónoma de México Apartado Postal 70-264 CDMX04510 Mexico 84/32 Profsoyuznaya Street Moscow117997 Russia National Research University "Higher School of Economics" Myasnitskaya ul. 20 Moscow101000 Russia School of Physics and Astronomy Monash University ClaytonVIC3800 Australia School of Physical Sciences National Institute of Science Education and Research Bhubaneswar India ICRA Net Piazza della Repubblica 10 PescaraI-65122 Italy Physics Department Lancaster University Bailrigg LancasterLA1 4YB United Kingdom Astrophysics Science Division NASA Goddard Space Flight Center MC 661 GreenbeltMD20771 United States Joint Space-Science Institute University of Maryland College ParkMD20742 United Stat

We present the largest optical photometry compilation of Gamma-Ray Bursts (GRBs) with redshifts (z). We include 64813 observations of 535 events (including upper limits) from 28 February 1997 to 18 August 2023. We also present a user-friendly web tool grbLC which allows users to visualise photometry, coordinates, redshift, host galaxy extinction, and spectral indices for each event in our database. Furthermore, we have added a Gamma-ray Coordinate Network (GCN) scraper that can be used to collect data by gathering magnitudes from the GCNs. The web tool also includes a package for uniformly investigating colour evolution. We compute the optical spectral indices for 138 GRBs, for which we have at least 4 filters at the same epoch in our sample, and craft a procedure to distinguish between GRBs with and without colour evolution. By providing a uniform format and repository for the optical catalogue, this web-based archive is the first step towards unifying several community efforts to gather the photometric information for all GRBs with known redshifts. This catalogue will enable population studies by providing light curves (LCs) with better coverage since we have gathered data from different ground-based locations. Consequently, these LCs can be used to train future LC reconstructions for an extended inference of the redshift. The data gathering also allows us to fill some of the orbital gaps from Swift in crucial points of the LCs, e.g., at the end of the plateau emission or where a jet break is identified. Copyright © 2024, The Authors. All rights reserved.

关键词： Population statistics

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