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Measuring drug similarity using drug–drug interactions

Quantitative Biology 2024年第2期12卷 164-172页

作者： Ji Lv Guixia Liu Yuan Ju Houhou Huang Ying Sun College of Computer Science and Technology Jilin UniversityChangchunChina Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin UniversityChangchunChina Sichuan University Library Sichuan UniversityChengduChina College of Chemistry Jilin UniversityChangchunChina Department of Respiratory Medicine The First Hospital of Jilin UniversityChangchunChina

Combination therapy is a promising approach to address the challenge of antimicrobial resistance,and computational models have been proposed for predicting drug–drug *** existing models rely on drug similarity measures based on characteristics such as chemical structure and the mechanism of *** this study,we focus on the network structure itself and propose a drug similarity measure based on drug–drug interaction *** explore the potential applications of this measure by combining it with unsupervised learning and semi-supervised learning *** unsupervised learning,drugs can be grouped based on their interactions,leading to almost monochromatic group–group *** addition,drugs within the same group tend to have similar mechanisms of action(MoA).In semi-supervised learning,the similarity measure can be utilized to construct affinity matrices,enabling the prediction of unknown drug–drug *** method exceeds existing approaches in terms of ***,our experiments demonstrate the effectiveness and practicability of the proposed similarity *** the one hand,when combined with clustering algorithms,it can be used for functional annotation of compounds with unknown *** the other hand,when combined with semi-supervised graph learning,it enables the prediction of unknown drug–drug interactions.

关键词： drug similarity drug–drug interactions drug combinations synergy effect clustering semi-supervised learning

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An Automatic Solution in Security Inspection

An Automatic Solution in Security Inspection

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International Conference on Machine Vision and Information Technology (CMVIT)

作者： Hui Zhang Xiaoli Zhang Key Laboratory of Symbolic Computation and Knowledge Engineer Ministry of Education Changchun China

In this paper, we present a brand new dataset named cellphone buttery defects in X-ray(CBDx). CBDx consists of 300 X-ray images and 250 of them are anomaly free. We name them ‘good’. Others have some defects in the area of buttery. We name them ‘anomaly’, as Fig. 1. It raises a new task of detecting anomaly defects of cellphone butteries. But the challenge is how to distinguish the anomaly in the case of only training the ‘good’ cellphone. We define this task as an anomaly detection task. We propose an approach to deal with the task from the perspective of unbalanced classification. Specifically, we propose a data augmentation strategy that creates an anomaly sample mimic to the real defects. It helps the classifier to learn self-supervised deep representations and then make it an one-class classifier based on the representations. The classifier is well designed to discriminate the defect samples from the good ones. We evaluate different data augmentation strategies on CBDx. Our approach is more significant in this scenario with no defect training samples, which can be applied in real-world security inspection someday. Also, it can be used on the industrial texture anomaly detection, such as MVTec_AD.

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Injecting Revenue-awareness into Cold-start Recommendation: The Case of Online Insurance 29

Injecting Revenue-awareness into Cold-start Recommendation: ...

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29th IEEE International Conference on Parallel and Distributed Systems, ICPADS 2023

作者： Li, Yu Zhang, Yi Chang, Helen He Li, Qiang Jilin University College of Computer Science and Technology China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education China WeSure Inc. Ping An Technology Shenzhen Co. Ltd China

ISBN: (纸本)9798350330717

In online insurance, one of the central challenges is the cold-starting of new insurance products, which means there are no previous samples to refer to. Previous studies have mainly focused on improving the prediction accuracy of new items, but they have failed to consider the revenue generated by existing items. As a result, the total revenue may suffer a loss even if new items get conversions. To address this issue, in this paper we propose RACRec, a Revenue-Aware Cold-start Recommendation framework for online insurance. Unlike previous works, RACRec uses a revenue-based objective function to ensure profitability when cold-starting new items. With this dedicated objective, RACRec orchestrates the cold-start and warm-start model by predicting their expected revenue from each user, thereby preserving the total profit. In order to accurately predict revenue, a double-ranking scheme is designed for the warm-start model to mitigate position bias, while an item embedding alignment algorithm is proposed for the cold-start model to learn the revenue of new items from similar old items. Furthermore, a reinforced orchestrate update scheme is designed to eliminate the impact of sparse conversions and continuously update revenue estimation. Extensive offline and online experiments have been conducted to validate the effectiveness of RACRec. © 2023 IEEE.

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A Simple Graph Contrastive Learning Framework for Short Text Classification

arXiv

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arXiv 2025年

作者： Liu, Yonghao Giunchiglia, Fausto Huang, Lan Li, Ximing Feng, Xiaoyue Guan, Renchu Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Jilin University China University of Trento Italy

Short text classification has gained significant attention in the information age due to its prevalence and real-world applications. Recent advancements in graph learning combined with contrastive learning have shown promising results in addressing the challenges of semantic sparsity and limited labeled data in short text classification. However, existing models have certain limitations. They rely on explicit data augmentation techniques to generate contrastive views, resulting in semantic corruption and noise. Additionally, these models only focus on learning the intrinsic consistency between the generated views, neglecting valuable discriminative information from other potential views. To address these issues, we propose a Simple graph contrastive learning framework for Short Text Classification (SimSTC). Our approach involves performing graph learning on multiple text-related component graphs to obtain multi-view text embeddings. Subsequently, we directly apply contrastive learning on these embeddings. Notably, our method eliminates the need for data augmentation operations to generate contrastive views while still leveraging the benefits of multi-view contrastive learning. Despite its simplicity, our model achieves outstanding performance, surpassing large language models on various datasets. Copyright © 2025, The Authors. All rights reserved.

关键词： Contrastive Learning

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Research and analysis of psychological data based on machine learning methods

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International Journal of Wireless and Mobile Computing 2022年第1期22卷 1-8页

作者： Chen, Guangshun Lv, Wei Ma, Junwei Liang, Yanchun Zhuhai Lab. of Key Lab. of Symbol Computation and Knowledge Engineering of Ministry of Education Zhuhai College of Jilin University Jilin Zhuhai China Key Laboratory of Symbol Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Jilin Changchun China

The integration of psychology and computer science has become the mainstream contemporary research method on psychological data. Weibo, China's largest open platform for communication and information sharing between users, has many emotional contents hidden in its data. According to the current trend, the Weibo data are segmented by machine learning to obtain a psychological portrait of Weibo users. This design uses Long and Short-Term Memory (LSTM) networks and Convolutional Neural Networks (CNNs) to perform sentiment classification on Weibo data. The classification results are analysed using word frequency analysis and the Latent Dirichlet Allocation (LDA) model to obtain portraits of Weibo users' sentiment and an analysis of the results. The results are displayed in the form of word clouds. According to the clustering results of the word clouds, the main factors affecting different polar emotions can be analysed. © 2022 Inderscience Enterprises Ltd.. All rights reserved.

关键词： Statistics

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Underwater Target Detection Based on Reinforcement Learning and Ant Colony Optimization

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Journal of Ocean University of China 2022年第2期21卷 323-330页

作者： WANG Xinhua ZHU Yungang LI Dayu ZHANG Guang School of Computer Science Northeast Electric Power UniversityJilin 132012China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education College of Computer Science and TechnologyJilin UniversityChangchun 130012China State Key Laboratory of Applied Optics Changchun Institute of OpticsFine Mechanics and PhysicsChinese Academy of SciencesChangchun 130033China

Underwater optical imaging produces images with high resolution and abundant information and hence has outstanding advantages in short-distance underwater target ***,low-light and high-noise scenarios pose great challenges in un-derwater image and video *** improve the accuracy and anti-noise performance of underwater target image edge detection,an underwater target edge detection method based on ant colony optimization and reinforcement learning is proposed in this ***,the reinforcement learning concept is integrated into artificial ants’movements,and a variable radius sensing strategy is pro-posed to calculate the transition probability of each *** methods aim to avoid undetection and misdetection of some pixels in image ***,a double-population ant colony strategy is proposed,where the search process takes into account global search and local search *** results show that the algorithm can effectively extract the contour information of underwater targets and keep the image texture well and also has ideal anti-interference performance.

关键词： ant colony optimization reinforcement learning underwater target edge detection

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Research on Ethnic Pattern Generation Based on Generative Adversarial Networks

Research on Ethnic Pattern Generation Based on Generative Ad...

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International Workshop on Advanced computational Intelligence (IWACI)

作者： Hao Wu Wenze He Xiongfei Li Yanchun Liang Zhuhai Sub Laboratory of Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education Zhuhai College of Science and Technology Zhuhai China Key Laboratory of Symbolic Computation and Knowledge Engineering of the Ministry of Education College of Computer Science and Technology Jilin University Changchun China

In this paper, we take Mongolian ethnic patterns as the research object and conduct a technical study on ethnic pattern generation and super-resolution reconstruction based on deep learning generative adversarial networks to address the problems of low quality of ethnic pattern data collection and lack of innovation. In this paper, we use a database including 1621 Mongolian ethnic patterns, train StyleGAN2 on the pre-processed images, and generate images After that, we use ESRGAN to perform super-resolution reconstruction on the generated images to generate high-resolution patterns with Mongolian style. The model designed in this paper can generate high quality images with ethnic characteristics in the case of insufficient original data. Compared with the time-consuming and labor-intensive traditional ethnic pattern design methods, the model designed in this paper lowers the threshold of ethnic pattern innovation and contributes to the innovative design of ethnic patterns to a certain extent, which has some positive significance for the protection and inheritance of ethnic patterns.

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Label-aware Multi-level Contrastive Learning for Cross-lingual Spoken Language Understanding

Label-aware Multi-level Contrastive Learning for Cross-lingu...

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2022 Conference on Empirical Methods in Natural Language Processing, EMNLP 2022

作者： Liang, Shining Shou, Linjun Pei, Jian Gong, Ming Zuo, Wanli Zuo, Xianglin Jiang, Daxin College of Computer Science and Technology Jilin University China Key laboratory of Symbolic Computation and Knowledge Engineering MOE STCA Microsoft Department of Electrical & Computer Engineering Duke University United States

Despite the great success of spoken language understanding (SLU) in high-resource languages, it remains challenging in low-resource languages mainly due to the lack of labeled training data. The recent multilingual code-switching approach achieves better alignments of model representations across languages by constructing a mixed-language context in zero-shot cross-lingual SLU. However, current code-switching methods are limited to implicit alignment and disregard the inherent semantic structure in SLU, i.e., the hierarchical inclusion of utterances, slots, and words. In this paper, we propose to model the utterance-slot-word structure by a multi-level contrastive learning framework at the utterance, slot, and word levels to facilitate explicit alignment. Novel code-switching schemes are introduced to generate hard negative examples for our contrastive learning framework. Furthermore, we develop a label-aware joint model leveraging label semantics to enhance the implicit alignment and feed to contrastive learning. Our experimental results show that our proposed methods significantly improve the performance compared with the strong baselines on two zero-shot cross-lingual SLU benchmark datasets. © 2022 Association for computational Linguistics.

关键词： Semantics

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The Discrete Approximation Problem for a Special Case of Hermite-Type Polynomial Interpolation

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Journal of Systems Science & Complexity 2022年第5期35卷 2004-2015页

作者： GONG Yihe JIANG Xue ZHANG Shugong College of Science Northeast Electric Power UniversityJilin 132000China School of Mathematics and Systematic Sciences Shenyang Normal UniversityShenyang 110034China Institute of Mathematics Key Lab.of Symbolic Computation and Knowledge Engineering(Ministry of Education)Jilin UniversityChangchun 130012China

Every univariate Hermite interpolation problem can be written as a pointwise limit of Lagrange ***,this property is not preserved for the multivariate *** this paper,the authors first generalize the result of *** an application,the authors consider the discrete approximation problem for a special case when the interpolation condition contains all partial derivatives of order less than n and one nth order differential *** addition,for the case of n≥3,the authors use the concept of Cartesian tensors to give a sufficient condition to find a sequence of discrete points,such that the Lagrange interpolation problems at these points converge to the given Hermite-type interpolant.

关键词： Discrete approximation problem Hermite interpolation Lagrange interpolation

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2D-3D Feature Co-Embedding Network with Sparse Annotation for 3D Medical Image Segmentation

2D-3D Feature Co-Embedding Network with Sparse Annotation fo...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Zhu, Mingzhu Guo, Shuyu Wang, Ziwei Jiao, Jianhang Bai, Tian Jilin University College of Computer Science and Technology Changchun China Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering Ministry of Education Changchun China Jilin University College of Software Changchun China The Second Norman Bethune Hospital Jilin University Department of Orthopedics Changchun China

ISBN: (纸本)9798350386226

Supervised methods on 3D medical image segmentation need large amounts of annotated data, but annotating is time-consuming. Also, existing 3D segmentation methods capture more global structural information but overlook local detailed features, which negatively impacts the segmentation of small tissues. In this paper, we propose a novel weakly-supervised 2D-3D Feature Co-Embedding Network (2D-3D CoENet) that includes 2D and 3D encoding layers, simultaneously extracting 2D local detailed and 3D global structural features. To reduce annotation costs, we use fewer labeled slices as ground truth and pseudo-labels are generated by 2D-3D CoENet for other slices. Additionally, multi-view learning is introduced to capture more 2D local detailed information, and a Multi-view Semantic Consistency loss (MSC loss) is proposed to constrain features from multiple perspectives. To further enhance the local detailed texture features, we propose an Edge Enhancement Module (EEM) in the 3D segmentation network to enhance the edge detail features. Our experimental results on the SKI10 dataset and OAI ZIB dataset demonstrate that our method outperforms the SOTA weakly-supervised segmentation methods. Moreover, our approach achieves results that are comparable to the fully-supervised upper bound results. © 2024 IEEE.

关键词： Medical imaging

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