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Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Genome biology 2019年第1期20卷 72页

作者： Alexa B R McIntyre Rachid Ounit Ebrahim Afshinnekoo Robert J Prill Elizabeth Hénaff Noah Alexander Samuel S Minot David Danko Jonathan Foox Sofia Ahsanuddin Scott Tighe Nur A Hasan Poorani Subramanian Kelly Moffat Shawn Levy Stefano Lonardi Nick Greenfield Rita R Colwell Gail L Rosen Christopher E Mason Tri-Institutional Program in Computational Biology and Medicine New York NY USA. Department of Physiology and Biophysics Weill Cornell Medicine New York NY 10021 USA. The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine New York NY 10021 USA. Department of Computer Science and Engineering University of California Riverside CA 92521 USA. School of Medicine New York Medical College Valhalla NY 10595 USA. Accelerated Discovery Lab IBM Almaden Research Center San Jose CA 95120 USA. One Codex Reference Genomics San Francisco CA 94103 USA. University of Vermont Burlington VT 05405 USA. CosmosID Inc Rockville MD 20850 USA. Center for Bioinformatics and Computational Biology University of Maryland Institute for Advanced Computer Studies (UMIACS) College Park MD 20742 USA. HudsonAlpha Institute for Biotechnology Huntsville AL 35806 USA. Johns Hopkins University Bloomberg School of Public Health Baltimore MD USA. Department of Electrical and Computer Engineering Drexel University Philadelphia PA 19104 USA. gail.l.rosen@***. Department of Physiology and Biophysics Weill Cornell Medicine New York NY 10021 USA. chm2042@med.cornell.edu. The HRH Prince Alwaleed Bin Talal Bin Abdulaziz Alsaud Institute for Computational Biomedicine New York NY 10021 USA. chm2042@med.cornell.edu. The Feil Family Brain and Mind Research Institute New York NY 10065 USA. chm2042@med.cornell.edu.

Following publication of the original article [1], the authors would like to highlight the following two corrections.

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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A review on diabetes patient lifestyle management using mobile application 18

A review on diabetes patient lifestyle management using mobi...

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18th International Conference on computer and Information Technology, ICCIT 2015

作者： Basar, Md Abul Alvi, Hassan Nomani Bokul, Gazi Nowrin Khan, M Shahriar Anowar, Farzana Huda, Mohammad Nurul Mamun, Khondaker Abdullah Al Department of Computer Science and Engineering Military Institute of Science and Technology Dhaka Bangladesh Advanced Intelligent Multidisciplinary Systems Lab Department of Computer Science and Engineering United International University Dhaka Bangladesh

ISBN: (纸本)9781467399302

Diabetes is a silent-killer disease that highly demands proper patient care and sound self-management which is a major challenge for a patient. The advancement in ICT and the rapid increase of mobile phone users are showing that lifestyle management of a diabetes patient can be guided using mobile application. The objective of this review is to analyze the articles and the existing mobile apps that are currently available to support diabetes patient and based on the analysis to describe the opportunities for developing a mobile app integrating most of the common features required for the self-management of a diabetic patient. The review covers journal databases for articles and online markets for mobile app. Initially we found 273 articles from the journal databases and 1004 apps from the online markets out of which 29 articles and 43 apps satisfied our selection criteria. We successfully brought out five primary and seven secondary features which can efficiently handle the self-management system. The major features include blood glucose monitor, medication, diet plan, physical activity, automated transfer of blood glucose data, SMS based notification, weight management, communication etc. No app in our review is found satisfying all the features. Since all the primary and secondary features as a whole are very essential for an effective diabetes patient lifestyle management, but not available in a single app, so there is a potential scope to develop such an app integrating all the features very efficiently. © 2015 IEEE.

关键词： Blood

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Non-coherent PSK-based dual-function radar-communication systems

Non-coherent PSK-based dual-function radar-communication sys...

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IEEE National Conference on Radar

作者： Aboulnasr Hassanien Moeness G. Amin Yimin D. Zhang Fauzia Ahmad Braham Himed Center for Advanced Communications Villanova University Villanova PA USA Department of Electrical and Computer Engineering Temple University Philadelphia PA USA RF Techoology Branch Air Force Research Lab (AFRL/RYMD) OH USA

ISBN: (纸本)9781509008643

Dual-function radar-communication (DFRC) systems enable information embedding into the radar signal emission. Existing methods for non-coherent phase-modulation DFRC employ multiple pairs of orthogonal waveforms and embed one communication symbol into each pair. The total number of symbols is equal to one-half of the number of waveforms. In this paper, we propose a new signaling strategy for embedding a higher number of communication symbols. The proposed method implements non-coherent phase-shift keying (PSK) by employing one of the orthogonal waveforms as a common reference and modulating the information in terms of the phase differences between all other waveforms and the reference waveform. The number of communication symbols that can be embedded equals the total number of waveforms minus one. We introduce two schemes for achieving a desired phase constellation. The proposed approach is shown to achieve a two-fold increase in the data rate compared to existing methods for a large number of waveforms.

关键词： Radar Communication symbols Receivers Array signal processing Amplitude shift keying Antenna radiation patterns Phase shift keying

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Bridge to real data: Empirical multiple material calibration for learning-based material decomposition

Bridge to real data: Empirical multiple material calibration...

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IEEE International Symposium on Biomedical Imaging

作者： Yanye Lu Martin Berger Michael Manhart Jang-hwan Choi Martin Hoheisel Markus Kowarschik Rebecca Fahrig Qiushi Ren Joachim Hornegger Andreas Maier Department of Biomedical Engineering Peking University Beijing China Advanced Therapies Siemens Healthcare GmbH Forchheim Germany Department of Computer Science Friedrich-Alexander-University Erlangen-Nuremberg Germany Radiological Sciences Lab Stanford University CA USA

ISBN: (纸本)9781479923519

In this study, we proposed an empirical multi-material calibration pipeline for learning-based material decomposition. We used realistic short scan CT data from a general metric phantom using a Siemens C-arm system, and built the corresponding numeric phantom data in a software framework. After that we applied registration approaches for matching the simulated data to the acquired data, which generates prior knowledge for the following material decomposition process, as well as the ground truth for quantitative evaluations. According to the preliminary decomposition results, we successfully decomposed the inserted phantom plugs of different materials using learning-based material decomposition process, which indicates that the proposed approach is valid for learning-based material decomposition.

关键词： Phantoms Computed tomography Calibration X-ray imaging Data mining Image reconstruction Physics

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Design and analysis of an axial flux magnetically geared generator 7

Design and analysis of an axial flux magnetically geared gen...

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7th Annual IEEE Energy Conversion Congress and Exposition, ECCE 2015

作者： Johnson, Matthew Gardner, Matthew C. Toliyat, Hamid A. Advanced Electric Machines and Power Electronics Lab Department of Electrical and Computer Engineering Texas AandM University College StationTX United States

ISBN: (纸本)9781467371506

Axial flux magnetically geared machines offer the potential to achieve exceptional torque densities at high diameters. This work proposes a topology for an axial flux magnetically geared machine, in which the electric machine is placed in the bore of the axial flux magnetic gear. This new topology offers the advantage of correctly matching the size of the electric machine to its required torque without increasing the volume of the system beyond that of the magnetic gear. A proof of concept prototype with a torque density of 7.8 kNm/m3 was designed, fabricated, and tested to evaluate the novel topology. A less conservative alternate design capable of achieving 60.6 kNm/m3 was also simulated to demonstrate the topology's potential for high torque densities, and even higher torque densities can be reached at larger scale designs. © 2015 IEEE.

关键词： Finite element method

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Electronic structure in hybrid nanocomposit 23

Electronic structure in hybrid nanocomposit

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23rd Iranian Conference on Electrical engineering, ICEE 2015

作者： Dehdashti Jahromi, Hamed Sheikhi, Mohammad Hossein Research Lab. for Fabrication of Advanced Semiconductor Devices Department of Communications and Electronics School of Electrical and Computer Engineering Shiraz University Shiraz71936-16511 Iran

ISBN: (纸本)9781479919727

Modern optoelectronic devices based on hybrid nanocomposite thin films composed of inorganic colloidal quantum dots (CQDs) embedded in an organic conjugated polymer have attracted much scientific attention. The CQDs are solution phase processed nanostructure which are coated with a surface ligand material that is comprised of short, organic molecules to prevent the CQDs from aggregation when placed in solution. These surface ligand materials behave as a thin, insulating layer that has been shown to prevent efficient transfer of excited carriers into and out of the CQD. Therefore, it is important to understand the effect that the surface ligand material has on the optical properties of the nanocomposite materials in order to design more efficient hybrid nanocomposite optoelectronic devices. In this paper, we present a method for calculating the electronic structure such as intraband energy levels and wave functions for CQDs in a nanocomposite thin film structure. The model is verified by comparing the results to reported data in literature. The model which is based on matrix method, causes simplicity in calculation and can easily be applied for more complicated structures. © 2015 IEEE.

关键词： Electronic structure

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A Numerical comparative study on 3D nanofluid flows

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Journal of Computational and Theoretical Nanoscience 2016年第8期13卷 4835-4842页

作者： Rashidi, M.M. Raju, C.S.K. Sandeep, N. Saleem, S. Shanghai Key Lab of Vehicle Aerodynamics and Vehicle Thermal Management Systems Tongji University Jiading Shanghai201804 China ENN-Tongji Clean Energy Institute of Advanced Studies Shanghai China Fluid Dynamics Division VIT University Vellore632014 India Department of Sciences and Humanities National University of Computer and Engineering Sciences Pakistan

This paper presents a comparative study to investigate the momentum and mass transfer behaviour of an unsteady three-dimensional MHD couple stress and Casson nanofluid flows over a stretching sheet in the presence of first order chemical reaction. The governing partial differential equations are transformed into set of nonlinear coupled ordinary differential equations by using self suitable transformations, which are then solved numerically using Runge-Kutta based shooting technique. The obtained results depict the effects of various non-dimensional governing parameters on velocity and concentration profiles of the flow. Also, enumerated and discussed the wall friction in x and y directions along with the Sherwood number. We presented dual solutions for the flow and mass transfer of couple stress and Casson nanofluids. We found an excellent agreement of the present results with the existed studies under some special limited cases. Results indicate that with an increase in the stretching ratio parameter enhances the mass transfer rate and suppresses the friction factor. The mass transfer rate of couple stress nanofluid is comparatively high while compared with the mass transfer rate of Casson nanofluid. © Copyright 2016 American Scientific Publishers All rights reserved.

关键词： Magnetohydrodynamics

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Nonspecular reflectors using one-step spray coating for brightness enhancement in reflective displays

Nonspecular reflectors using one-step spray coating for brig...

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EuroDisplay 2015 Conference

作者： Pan, Su Kwok, Hoi-Sing State Key Lab on Advanced Displays and Optoelectronics Department of Electronic and Computer Engineering Hong Kong University of Science and Technology Clear Water Bay Kowloon Hong Kong

We proposed a novel method to fabricate nonspecular reflectors by spray coating system, which are applied to enhance brightness near normal view direction when light is obliquely incident. Fabrication parameters are o... 详细信息

ISBN: (纸本)9781510833104

关键词： Luminance

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The overlapping burden of the three leading causes of disability and death in sub-Saharan African children

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Nature Communications 2022年第1期13卷 1-14页

作者： Reiner, Robert C. Welgan, Catherine A. Troeger, Christopher E. Baumann, Mathew M. Weiss, Daniel J. Deshpande, Aniruddha Blacker, Brigette F. Miller-Petrie, Molly K. Earl, Lucas Bhatt, Samir Abolhassani, Hassan Abosetugn, Akine Eshete Abu-Gharbieh, Eman Adekanmbi, Victor Adetokunboh, Olatunji O. Aghaali, Mohammad Aji, Budi Alahdab, Fares Al-Aly, Ziyad Alhassan, Robert Kaba Ali, Saqib Alizade, Hesam Aljunid, Syed Mohamed Almasi-Hashiani, Amir Al-Mekhlafi, Hesham M. Altirkawi, Khalid A. Alvis-Guzman, Nelson Amare, Azmeraw T. Amini, Saeed Amugsi, Dickson A. Ancuceanu, Robert Andrei, Catalina Liliana Ansari, Fereshteh Anvari, Davood Appiah, Seth Christopher Yaw Arabloo, Jalal Aremu, Olatunde Atout, Maha Moh’d Wahbi Ausloos, Marcel Ausloos, Floriane Ayanore, Martin Amogre Aynalem, Yared Asmare Azene, Zelalem Nigussie Badawi, Alaa Baig, Atif Amin Banach, Maciej Bedi, Neeraj Bhagavathula, Akshaya Srikanth Bhandari, Dinesh Bhardwaj, Nikha Bhardwaj, Pankaj Bhattacharyya, Krittika Bhutta, Zulfiqar A. Bijani, Ali Birhanu, Tesega Tesega Mengistu Bitew, Zebenay Workneh Boloor, Archith Brady, Oliver J. Butt, Zahid A. Car, Josip Carvalho, Felix Casey, Daniel C. Chattu, Vijay Kumar Chowdhury, Mohiuddin Ahsanul Kabir Chu, Dinh-Toi Coelho, Camila H. Cook, Aubrey J. Damiani, Giovanni Daoud, Farah Gela, Jiregna Darega Darwish, Amira Hamed Daryani, Ahmad Das, Jai K. Davis Weaver, Nicole Deribe, Kebede Desalew, Assefa Dharmaratne, Samath Dhamminda Dianatinasab, Mostafa Diaz, Daniel Djalalinia, Shirin Dorostkar, Fariba Dubljanin, Eleonora Duko, Bereket Dwyer-Lindgren, Laura Effiong, Andem El Sayed Zaki, Maysaa El Tantawi, Maha Enany, Shymaa Fattahi, Nazir Feigin, Valery L. Fernandes, Eduarda Ferrara, Pietro Fischer, Florian Foigt, Nataliya A. Folayan, Morenike Oluwatoyin Foroutan, Masoud Frostad, Joseph Jon Fukumoto, Takeshi Gaidhane, Abhay Motiramji Gebrekrstos, Hailemikael Gebrekidan G. K. Gebremeskel, Leake Gebreslassie, Assefa Ayalew Gething, Peter W. Gezae, Kebede Embaye Ghadiri, Keyghobad Ghashghaee, Ahmad Golechha, Mahaveer Gubar Institute for Health Metrics and Evaluation University of Washington Seattle WA United States Department of Health Metrics Sciences School of Medicine University of Washington Seattle WA United States Malaria Atlas Project University of Oxford Oxford United Kingdom Imperial College London London United Kingdom Department of Laboratory Medicine Karolinska University Hospital Huddinge Sweden Research Center for Immunodeficiencies Tehran University of Medical Sciences Tehran Iran Department of Public Health Debre Berhan University Debre Berhan Ethiopia Department of Clinical Sciences University of Sharjah Sharjah United Arab Emirates Population Health Sciences King’s College London London United Kingdom Centre of Excellence for Epidemiological Modelling and Analysis Stellenbosch University Stellenbosch South Africa Department of Global Health Stellenbosch University Cape Town South Africa Department of Epidemiology and Biostatistics Qom University of Medical Sciences Qom Iran Faculty of Medicine and Public Health Jenderal Soedirman University Purwokerto Indonesia Mayo Evidence-based Practice Center Mayo Clinic Foundation for Medical Education and Research Rochester MN United States John T. Milliken Department of Internal Medicine Washington University in St. Louis St. Louis MO United States Clinical Epidemiology Center Department of Veterans Affairs St Louis MO United States Institute of Health Research University of Health and Allied Sciences Ho Ghana Department of Information Systems College of Economics and Political Science Sultan Qaboos University Muscat Oman Infectious and Tropical Disease Research Center Hormozgan University of Medical Sciences Bandar Abbas Iran Department of Health Policy and Management Kuwait University Safat Kuwait International Centre for Casemix and Clinical Coding National University of Malaysia Bandar Tun Razak Malaysia Department of Epidemiology Arak University of Medical Sciences Arak Iran Medical Research Center

Despite substantial declines since 2000, lower respiratory infections (LRIs), diarrhoeal diseases, and malaria remain among the leading causes of nonfatal and fatal disease burden for children under 5 years of age (under 5), primarily in sub-Saharan Africa (SSA). The spatial burden of each of these diseases has been estimated subnationally across SSA, yet no prior analyses have examined the pattern of their combined burden. Here we synthesise subnational estimates of the burden of LRIs, diarrhoea, and malaria in children under-5 from 2000 to 2017 for 43 sub-Saharan countries. Some units faced a relatively equal burden from each of the three diseases, while others had one or two dominant sources of unit-level burden, with no consistent pattern geographically across the entire subcontinent. Using a subnational counterfactual analysis, we show that nearly 300 million DALYs could have been averted since 2000 by raising all units to their national average. Our findings are directly relevant for decision-makers in determining which and targeting where the most appropriate interventions are for increasing child survival. © 2022, The Author(s).

关键词： Biogeography Epidemiology Infectious diseases Malaria

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