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Remote Sensing Plateau Forest Segmentation with Boundary Preserving Double Loss Function Collaborative Learning

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Journal of New Media 2022年第4期4卷 165-177页

作者： Ying Ma Jiaqi Zhang Pengyu Liu Zhihao Wei Lingfei Zhang Xiaowei Jia School of Physics and Electronic Information Engineering Qinghai Minzu UniversityXining810007China The Information Department Beijing University of TechnologyBeijing100124China Advanced Information Network Beijing Laboratory Beijing100124China Computational Intelligence and Intelligent Systems Beijing key Laboratory Beijing100124China Institute of Remote Sensing and Geographic Information System School of Earth and Space SciencesPeking UniversityBeijing100871China Department of Computer Science University of Pittsburgh15260USA

Plateau forest plays an important role in the high-altitude ecosystem,and contributes to the global carbon *** forest monitoring request in-suit data from field *** recent development of the remote sensing technic,large-scale satellite data become available for surface *** to the various information contained in the remote sensing data,obtain accurate plateau forest segmentation from the remote sensing imagery still remain *** developed deep learning(DL)models such as deep convolutional neural network(CNN)has been widely used in image processing tasks,and shows possibility for remote sensing ***,due to the unique characteristics and growing environment of the plateau forest,generate feature with high robustness needs to design structures with high *** at the problem that the existing deep learning segmentation methods are difficult to generate the accurate boundary of the plateau forest within the satellite imagery,we propose a method of using boundary feature maps for collaborative *** are three improvements in this ***,design a multi input model for plateau forest segmentation,including the boundary feature map as an additional input label to increase the amount of information at the ***,we apply a strong boundary search algorithm to obtain boundary value,and propose a boundary value loss ***,improve the Unet segmentation network and combine dense block to improve the feature reuse ability and reduces the image information loss of the model during *** then demonstrate the utility of our method by detecting plateau forest regions from ZY-3 satellite regarding to Sanjiangyuan nature *** experimental results show that the proposed method can utilize multiple feature information comprehensively which is beneficial to extracting information from boundary,and the detection accuracy is generally higher than several state-of-art algorit

关键词： Remote sensing forest segmentation boundary preserving double loss function

HUNTER: AI based holistic resource management for sustainable cloud computing

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arXiv 2021年

作者： Tuli, Shreshth Gill, Sukhpal Singh Xu, Minxian Garraghan, Peter Bahsoon, Rami Prof, Scharam Dustdar Sakellariou, Rizos Rana, Omer Buyya, Rajkumar Casale, Giuliano Jennings, Nicholas R. Department of Computing Imperial College London United Kingdom School of Electronic Engineering and Computer Science Queen Mary University of London United Kingdom Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences China School of Computing and Communications Lancaster University United Kingdom School of Computer Science University of Birmingham United Kingdom Distributed Systems Group Vienna University of Technology Austria Department of Computer Science University of Manchester United Kingdom School of Computer Science and Informatics Cardiff University United Kingdom Laboratory School of Computing and Information Systems The University of Melbourne Australia

The worldwide adoption of cloud data centers (CDCs) has given rise to the ubiquitous demand for hosting application services on the cloud. Further, contemporary data-intensive industries have seen a sharp upsurge in the resource requirements of modern applications. This has led to the provisioning of an increased number of cloud servers, giving rise to higher energy consumption and, consequently, sustainability concerns. Traditional heuristics and reinforcement learning based algorithms for energy-efficient cloud resource management address the scalability and adaptability related challenges to a limited extent. Existing work often fails to capture dependencies across thermal characteristics of hosts, resource consumption of tasks and the corresponding scheduling decisions. This leads to poor scalability and an increase in the compute resource requirements, particularly in environments with non-stationary resource demands. To address these limitations, we propose an artificial intelligence (AI) based holistic resource management technique for sustainable cloud computing called HUNTER. The proposed model formulates the goal of optimizing energy efficiency in data centers as a multi-objective scheduling problem, considering three important models: energy, thermal and cooling. HUNTER utilizes a Gated Graph Convolution Network as a surrogate model for approximating the Quality of Service (QoS) for a system state and generating optimal scheduling decisions. Experiments on simulated and physical cloud environments using the CloudSim toolkit and the COSCO framework show that HUNTER outperforms state-of-the-art baselines in terms of energy consumption, SLA violation, scheduling time, cost and temperature by up to 12, 35, 43, 54 and 3 percent respectively. © 2021, CC BY.

关键词： Energy efficiency

Label-free Imaging with Photonic Crystal Surface for Hematopoietic Stem Cell Differentiation

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Label-free Imaging with Photonic Crystal Surface for Hematop...

Microscopy Histopathology and Analytics, Microscopy 2024 - Part of Optica Biophotonics Congress: Biomedical Optics

作者： Zhuo, Yue Choi, Ji Sun Marin, Thibault Yu, Hojeong Harley, Brendan A. Cunningham, Brian T. Gordon Center for Medical Imaging Massachusetts General Hospital BostonMA02114 United States Center for Systems Biology Massachusetts General Hospital BostonMA02114 United States Department of Radiology Harvard Medical School BostonMA02114 United States Department of Bioengineering University of Illinois at Urbana-Champaign UrbanaIL61801 United States Department of Chemical and Biomolecular Engineering University of Illinois at Urbana-Champaign UrbanaIL61801 United States Department of Electrical and Computer Engineering University of Illinois at Urbana-Champaign UrbanaIL61801 United States Micro and Nanotechnology Laboratory University of Illinois at Urbana-Champaign UrbanaIL61801 United States Beckman Institute for Advanced Science and Technology University of Illinois at Urbana-Champaign UrbanaIL61801 United States Carl R. Woese Institute for Genomic Biology University of Illinois at Urbana-Champaign UrbanaIL61801 United States

With the Photonic Resonator Outcoupler Microscopy (PROM), it is possible to detect and monitor weak-adhesive HSC adhesion without labeling. These findings indicate that PROM can be used to quantitatively and dynamical... 详细信息

ISBN: (纸本)9781957171340

关键词： Stem cells

Symbolic genetic algorithm for discovering open-form partial differential equations (SGA-PDE)

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Physical Review Research 2022年第2期4卷 023174-023174页

作者： Yuntian Chen Yingtao Luo Qiang Liu Hao Xu Dongxiao Zhang Eastern Institute for Advanced Study Yongriver Institute of Technology Ningbo Zhejiang 315201 People's Republic of China Department of Computer Science University of Washington Seattle Washington 98195 USA RealAI Beijing 100085 People's Republic of China Beijing Innovation Center for Engineering Science and Advanced Technology (BIC-ESAT) Energy and Resources Engineering (ERE) and State Key Laboratory for Turbulence and Complex Systems (SKLTCS) College of Engineering Peking University Beijing 100871 People's Republic of China National Center for Applied Mathematics Shenzhen (NCAMS) Southern University of Science and Technology Shenzhen Guangdong 518055 People's Republic of China Department of Mathematics and Theories Peng Cheng Laboratory Shenzhen Guangdong 518000 People's Republic of China

Partial differential equations (PDEs) are concise and understandable representations of domain knowledge, which are essential for deepening our understanding of physical processes and predicting future responses. However, the PDEs of many real-world problems are uncertain, which calls for PDE discovery. We propose the symbolic genetic algorithm to discover open-form PDEs (SGA-PDE) directly from data without prior knowledge about the equation structure. SGA-PDE focuses on the representation and optimization of PDEs. Firstly, SGA-PDE uses symbolic mathematics to realize the flexible representation of any given PDE, transforms a PDE into a forest, and converts each function term into a binary tree. Secondly, SGA-PDE adopts a specially designed genetic algorithm to efficiently optimize the binary trees by iteratively updating the tree topology and node attributes. The SGA-PDE is gradient free, which is a desirable characteristic in PDE discovery since it is difficult to obtain the gradient between the PDE loss and the PDE structure. In the experiment, SGA-PDE not only successfully discovered the nonlinear Burgers’ equation, the Korteweg–de Vries equation, and the Chafee-Infante equation but also handled PDEs with fractional structure and compound functions that cannot be solved by conventional PDE discovery methods.

关键词： Classical statistical mechanics Complex fluids Neuronal dynamics Shock waves Turbulence

Transformer-based personalized attention mechanism for medical images with clinical records

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Journal of Pathology Informatics 2023年 14卷 100185-100185页

作者： Takagi, Yusuke Hashimoto, Noriaki Masuda, Hiroki Miyoshi, Hiroaki Ohshima, Koichi Hontani, Hidekata Takeuchi, Ichiro Department of Computer Science Nagoya Institute of Technology Gokiso-cho Showa-ku Nagoya 4668555 Japan RIKEN Center for Advanced Intelligence Project 1-4-1 Nihonbashi Chuo-ku Tokyo 1030027 Japan Department of Pathology Kurume University School of Medicine 67 Asahi-machi Kurume 8300011 Japan Department of Mechanical Systems Engineering Nagoya University Furo-cho Chikusa-ku Nagoya 4648603 Japan

In medical image diagnosis, identifying the attention region, i.e., the region of interest for which the diagnosis is made, is an important task. Various methods have been developed to automatically identify target regions from given medical images. However, in actual medical practice, the diagnosis is made based on both the images and various clinical records. Consequently, pathologists examine medical images with prior knowledge of the patients and the attention regions may change depending on the clinical records. In this study, we propose a method, called the Personalized Attention Mechanism (PersAM) method, by which the attention regions in medical images according to the clinical records. The primary idea underlying the PersAM method is the encoding of the relationships between medical images and clinical records using a variant of the Transformer architecture. To demonstrate the effectiveness of the PersAM method, we applied it to a large-scale digital pathology problem involving identifying the subtypes of 842 malignant lymphoma patients based on their gigapixel whole-slide images and clinical records. © 2023 The Authors

关键词： Digital pathology Multimodal analysis Personalized attention Transformer Whole slide image

Adaptive beamforming for optical wireless communication via fiber modal control

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arXiv 2023年

作者： Li, Chao Zhang, Yiwen Yan, Xinda Wang, Yuzhe Zhang, Xuebing Cui, Jian Zhu, Lei Li, Juhao Li, Zilun Yu, Shaohua Cao, Zizheng Koonen, A.M.J. Hsu, Chia Wei Peng Cheng Laboratory Guangdong Shenzhen518055 China Ming Hsieh Department of Electrical and Computer Engineering University of Southern California Los AngelesCA90089 United States Institute for Photonic Integration Department of Electrical Engineering Eindhoven University of Technology Eindhoven5612 AZ Netherlands State Key Laboratory of Advanced Optical Communication Systems and Networks Peking University Beijing100871 China Division of Vascular Surgery The First Affiliated Hospital Sun Yat-sen University Guangdong Guangzhou510080 China

High-speed optical wireless communication can address the exponential growth in data traffic. Adaptive beamforming customized for the target location is crucial, but existing solutions such as liquidcrystal spatial light modulators and microelectromechanical systems require costly micro/nano manufacturing, delicate alignment, and a high degree of mechanical stability. These challenges reflect the fragility of integrating a fiber network with micro/nano mechanical or photonic systems. Here, we realize low-cost, low-loss, and fiber-compatible beamforming and continuous beam steering through controlled bending of a multi-mode fiber that modifies its modal coupling, and use it to enable flexible optical wireless communication at 10 Gb/s. By using the fiber modal coupling as degrees of freedom rather than an impediment, this approach offers a promising solution for flexible and cost-effective optical wireless communication networks. © 2023, CC BY-NC-SA.

关键词： Fibers

CircRNAFisher: a systematic computational approach for de novo circular RNA identification

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中国药理学报（英文版） 2019年第1期40卷 55-63页

作者： Guo-yi Jia Duo-lin Wang Meng-zhu Xue Yu-wei Liu Yu-chen Pei Ying-qun Yang Jing-mei Xu Yan-chun Liang Peng Wang School of Life Sciences Shanghai University Shanghai 200444 China Laboratory of Systems Biology Shanghai Advanced Research Institute Chinese Academy of SciencesShanghai 201210 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education College of Computer Science and Technology Jilin University Changchun 130012 China Laboratory of Systems Biology Shanghai Advanced Research Institute Chinese Academy of SciencesShanghai 201210 China Laboratory of Systems Biology Shanghai Advanced Research Institute Chinese Academy of SciencesShanghai 201210 China School of Life Science and Technology Shanghai Tech University Shanghai 201210 China

Circular RNAs (circRNAs) are emerging species of mRNA splicing products with largely unknown *** several computational pipelines for circRNA identification have been developed,these methods strictly rely on uniquely mapped reads overlapping back-splice junctions (BSJs) and lack approaches to model the statistical significance of the identified ***,we reported a systematic computational approach to identify circRNAs by simultaneously utilizing BSJ overlapping reads and discordant BSJ spanning reads to identify ***,we developed a novel procedure to estimate the P-values of the identified circRNAs.A computational cross-validation and experimental validations demonstrated that our method performed favorably compared to existing circRNA detection *** created a standalone tool,CircRNAFisher,to implement the method,which might be valuable to computational and experimental scientists studying circRNAs.

关键词： circRNA RNA-Seq alternative splicing pipeline

Dual-Consistency semi-supervised learning with uncertainty quantification for covid-19 lesion segmentation from CT images

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arXiv 2021年

作者： Li, Yanwen Luo, Luyang Lin, Huangjing Chen, Hao Heng, Pheng-Ann Imsight AI Research Lab Shenzhen China Department of Computer Science and Engineering The Chinese University of Hong Kong Hong Kong Department of Computer Science and Engineering The Hong Kong University of Science and Technology Hong Kong Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences China

The novel coronavirus disease 2019 (COVID-19) characterized by atypical pneumonia has caused millions of deaths worldwide. Automatically segmenting lesions from chest Computed Tomography (CT) is a promising way to assist doctors in COVID-19 screening, treatment planning, and follow-up monitoring. However, voxel-wise annotations are extremely expert-demanding and scarce, especially when it comes to novel diseases, while an abundance of unlabeled data could be available. To tackle the challenge of limited annotations, in this paper, we propose an uncertainty-guided dual-consistency learning network (UDC-Net) for semi-supervised COVID-19 lesion segmentation from CT images. Specifically, we present a dual-consistency learning scheme that simultaneously imposes image transformation equivalence and feature perturbation invariance to effectively harness the knowledge from unlabeled data. We then quantify the segmentation uncertainty in two forms and employ them together to guide the consistency regularization for more reliable unsupervised learning. Extensive experiments showed that our proposed UDC-Net improves the fully supervised method by 6.3% in Dice and outperforms other competitive semi-supervised approaches by significant margins, demonstrating high potential in real-world clinical practice. 2 © 2021, CC BY-NC-ND.

关键词： Coronavirus

OXnet: Deep omni-supervised thoracic disease detection from chest X-rays

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arXiv 2021年

作者： Luo, Luyang Chen, Hao Zhou, Yanning Lin, Huangjing Heng, Pheng-Ann Department of Computer Science and Engineering The Chinese University of Hong Kong Hong Kong Department of Computer Science and Engineering The Hong Kong University of Science and Technology Hong Kong Imsight AI Research Lab Shenzhen China Guangdong-Hong Kong-Macao Joint Laboratory of Human-Machine Intelligence-Synergy Systems Shenzhen Institutes of Advanced Technology Chinese Academy of Sciences China

Chest X-ray (CXR) is the most typical diagnostic X-ray examination for screening various thoracic diseases. Automatically localizing lesions from CXR is promising for alleviating radiologists' reading burden. However, CXR datasets are often with massive image-level annotations and scarce lesion-level annotations, and more often, without annotations. Thus far, unifying different supervision granularities to develop thoracic disease detection algorithms has not been comprehensively addressed. In this paper, we present OXnet, the first deep omni-supervised thoracic disease detection network to our best knowledge that uses as much available supervision as possible for CXR diagnosis. We first introduce supervised learning via a one-stage detection model. Then, we inject a global classification head to the detection model and propose dual attention alignment to guide the global gradient to the local detection branch, which enables learning lesion detection from image-level annotations. We also impose intra-class compactness and inter-class separability with global prototype alignment to further enhance the global information learning. Moreover, we leverage a soft focal loss to distill the soft pseudo-labels of unlabeled data generated by a teacher model. Extensive experiments on a large-scale chest X-ray dataset show the proposed OXnet outperforms competitive methods with significant margins. Further, we investigate omni-supervision under various annotation granularities and corroborate OXnet is a promising choice to mitigate the plight of annotation shortage for medical image diagnosis.2 © 2021, CC BY-NC-ND.

关键词： Deep learning