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Conference on Extreme Science and Engineering Discovery Environment, XSEDE 2013

作者： Koesterke, L. Milfeld, K. Vaughn, M.W. Stanzione, D. Koltes, J.E. Weeks, N.T. Reecy, J.M. Texas Advanced Computing Center University of Texas at Austin United States Department of Animal Science High Performance Computing Group Iowa State University United States

ISBN: (纸本)9781450321709

The PCIT method is an important technique for detecting interactions between networks. The PCIT algorithm has been used in the biological context to infer complex regulatory mechanisms and interactions in genetic networks, in genome wide association studies, and in other similar problems. In this work, the PCIT algorithm is re-implemented with exemplary parallel, vector, I/O, memory and instruction optimizations for today's multi- and many-core architectures. The evolution and performance of the new code targets the processor architectures of the Stampede supercomputer, but will also benefit other architectures. The Stampede system consists of an Intel Xeon E5 processor base system with an innovative component comprised of Intel Xeon Phi Coprocessors. Optimized results and an analysis are presented for both the Xeon and the Xeon Phi. © 2013 by the Association for computing Machinery, Inc.

关键词： Supercomputers

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Erratum to: Search for heavy resonances decaying into a W or Z boson and a Higgs boson in final states with leptons and b-jets in 36 fb−1 of TeV pp collisions with the ATLAS detector

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Journal of high Energy Physics 2018年第11期2018卷 1-18页

作者： Aaboud, M. Aad, G. Abbott, B. Abdinov, O. Abeloos, B. Abidi, S. H. AbouZeid, O. S. Abraham, N. L. Abramowicz, H. Abreu, H. Abreu, R. Abulaiti, Y. Acharya, B. S. Adachi, S. Adamczyk, L. Adelman, J. Adersberger, M. Adye, T. Affolder, A. A. Afik, Y. Agatonovic-Jovin, T. Agheorghiesei, C. Aguilar-Saavedra, J. A. Ahlen, S. P. Ahmadov, F. Aielli, G. Akatsuka, S. Akerstedt, H. Åkesson, T. P. A. Akilli, E. Akimov, A. V. Alberghi, G. L. Albert, J. Albicocco, P. Alconada Verzini, M. J. Alderweireldt, S. C. Aleksa, M. Aleksandrov, I. N. Alexa, C. Alexander, G. Alexopoulos, T. Alhroob, M. Ali, B. Aliev, M. Alimonti, G. Alison, J. Alkire, S. P. Allbrooke, B. M. M. Allen, B. W. Allport, P. P. Aloisio, A. Alonso, A. Alonso, F. Alpigiani, C. Alshehri, A. A. Alstaty, M. I. Alvarez Gonzalez, B. Álvarez Piqueras, D. Alviggi, M. G. Amadio, B. T. Amaral Coutinho, Y. Amelung, C. Amidei, D. Amor Dos Santos, S. P. Amoroso, S. Amundsen, G. Anastopoulos, C. Ancu, L. S. Andari, N. Andeen, T. Anders, C. F. Anders, J. K. Anderson, K. J. Andreazza, A. Andrei, V. Angelidakis, S. Angelozzi, I. Angerami, A. Anisenkov, A. V. Anjos, N. Annovi, A. Antel, C. Antonelli, M. Antonov, A. Antrim, D. J. Anulli, F. Aoki, M. Aperio Bella, L. Arabidze, G. Arai, Y. Araque, J. P. Araujo Ferraz, V. Arce, A. T. H. Ardell, R. E. Arduh, F. A. Arguin, J-F. Argyropoulos, S. Arik, M. Armbruster, A. J. Armitage, L. J. Arnaez, O. Arnold, H. Arratia, M. Arslan, O. Artamonov, A. Artoni, G. Artz, S. Asai, S. Asbah, N. Ashkenazi, A. Asquith, L. Assamagan, K. Astalos, R. Atkinson, M. Atlay, N. B. Augsten, K. Avolio, G. Axen, B. Ayoub, M. K. Azuelos, G. Baas, A. E. Baca, M. J. Bachacou, H. Bachas, K. Backes, M. Bagnaia, P. Bahmani, M. Bahrasemani, H. Baines, J. T. Bajic, M. Baker, O. K. Bakker, P. J. Baldin, E. M. Balek, P. Balli, F. Balunas, W. K. Banas, E. Bandyopadhyay, A. Banerjee, Sw. Bannoura, A. A. E. Barak, L. Barberio, E. L. Barberis, D. Barbero, M. Barillari, T. Barisits, M-S Barkeloo, J. T. Barklow, T. Barlow, N. Barnes, S. L. Barnett, B. M. Barnett, R. M. Barnovs Faculté des Sciences Université Mohamed Premier and LPTPM Oujda Morocco CPPM Aix-Marseille Université and CNRS/IN2P3 Marseille France Homer L. Dodge Department of Physics and Astronomy University of Oklahoma Norman United States of America Institute of Physics Azerbaijan Academy of Sciences Baku Azerbaijan LAL Univ. Paris-Sud CNRS/IN2P3 Université Paris-Saclay Orsay France Department of Physics University of Toronto Toronto Canada Santa Cruz Institute for Particle Physics University of California Santa Cruz Santa Cruz United States of America Department of Physics and Astronomy University of Sussex Brighton United Kingdom Raymond and Beverly Sackler School of Physics and Astronomy Tel Aviv University Tel Aviv Israel Department of Physics Technion: Israel Institute of Technology Haifa Israel Center for High Energy Physics University of Oregon Eugene United States of America Department of Physics Stockholm University Stockholm Sweden The Oskar Klein Centre Stockholm Sweden INFN Gruppo Collegato di Udine Sezione di Trieste Udine Italy ICTP Trieste Italy Department of Physics King’s College London London United Kingdom International Center for Elementary Particle Physics and Department of Physics The University of Tokyo Tokyo Japan AGH University of Science and Technology Faculty of Physics and Applied Computer Science Krakow Poland Department of Physics Northern Illinois University DeKalb United States of America Fakultät für Physik Ludwig-Maximilians-Universität München München Germany Particle Physics Department Rutherford Appleton Laboratory Didcot United Kingdom Institute of Physics University of Belgrade Belgrade Serbia Department of Physics Alexandru Ioan Cuza University of Iasi Iasi Romania Laboratório de Instrumentação e Física Experimental de Partículas – LIP Lisboa Portugal Departamento de Fisica Teorica y del Cosmos Universidad de Granada Granada Portugal Department of Physics Boston University Boston United States of America Joi

One correction is noted for the paper. The exclusion limits for the gluon-gluon fusion production of an A boson reported in the conclusions did not correspond to the exclusion plots shown in figure 6a.

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Search for heavy resonances decaying to a Z boson and a photon in pp collisions at s=13 TeV with the ATLAS detector

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Physics Letters, Section B: Nuclear, Elementary Particle and high-Energy Physics 2017年 764卷 11-30页

作者： Aaboud, M. Aad, G. Abbott, B. Abdallah, J. Abdinov, O. Abeloos, B. Aben, R. AbouZeid, O.S. Abraham, N.L. Abramowicz, H. Abreu, H. Abreu, R. Abulaiti, Y. Acharya, B.S. Adachi, S. Adamczyk, L. Adams, D.L. Adelman, J. Adomeit, S. Adye, T. Affolder, A.A. Agatonovic-Jovin, T. Agricola, J. Aguilar-Saavedra, J.A. Ahlen, S.P. Ahmadov, F. Aielli, G. Akerstedt, H. Åkesson, T.P.A. Akimov, A.V. Alberghi, G.L. Albert, J. Albrand, S. Alconada Verzini, M.J. Aleksa, M. Aleksandrov, I.N. Alexa, C. Alexander, G. Alexopoulos, T. Alhroob, M. Ali, B. Aliev, M. Alimonti, G. Alison, J. Alkire, S.P. Allbrooke, B.M.M. Allen, B.W. Allport, P.P. Aloisio, A. Alonso, A. Alonso, F. Alpigiani, C. Alshehri, A.A. Alstaty, M. Alvarez Gonzalez, B. Álvarez Piqueras, D. Alviggi, M.G. Amadio, B.T. Amako, K. Amaral Coutinho, Y. Amelung, C. Amidei, D. Amor Dos Santos, S.P. Amorim, A. Amoroso, S. Amundsen, G. Anastopoulos, C. Ancu, L.S. Andari, N. Andeen, T. Anders, C.F. Anders, G. Anders, J.K. Anderson, K.J. Andreazza, A. Andrei, V. Angelidakis, S. Angelozzi, I. Anger, P. Angerami, A. Anghinolfi, F. Anisenkov, A.V. Anjos, N. Annovi, A. Antel, C. Antonelli, M. Antonov, A. Anulli, F. Aoki, M. Aperio Bella, L. Arabidze, G. Arai, Y. Araque, J.P. Arce, A.T.H. Arduh, F.A. Arguin, J-F. Argyropoulos, S. Arik, M. Armbruster, A.J. Armitage, L.J. Arnaez, O. Arnold, H. Arratia, M. Arslan, O. Artamonov, A. Artoni, G. Artz, S. Asai, S. Asbah, N. Ashkenazi, A. Åsman, B. Asquith, L. Assamagan, K. Astalos, R. Atkinson, M. Atlay, N.B. Augsten, K. Avolio, G. Axen, B. Ayoub, M.K. Azuelos, G. Baak, M.A. Baas, A.E. Baca, M.J. Bachacou, H. Bachas, K. Backes, M. Backhaus, M. Bagiacchi, P. Bagnaia, P. Bai, Y. Baines, J.T. Baker, O.K. Baldin, E.M. Balek, P. Balestri, T. Balli, F. Balunas, W.K. Banas, E. Banerjee, Sw. Bannoura, A.A.E. Barak, L. Barberio, E.L. Barberis, D. Barbero, M. Barillari, T. Barisits, M-S Barklow, T. Barlow, N. Barnes, S.L. Barnett, B.M. Barnett, R.M. Barnovska-Blenessy, Z. Baroncelli, A. Barone, G. Barr, A.J. Barranco Navarro, L. Barreiro, F. Barreiro Gui Department of Physics University of Adelaide Adelaide Australia Physics Department SUNY Albany Albany NY United States Department of Physics University of Alberta Edmonton AB Canada Department of Physics Ankara University Ankara Turkey Istanbul Aydin University Istanbul Turkey Division of Physics TOBB University of Economics and Technology Ankara Turkey LAPP CNRS/IN2P3 Université Savoie Mont Blanc Annecy-le-Vieux France High Energy Physics Division Argonne National Laboratory Argonne IL United States Department of Physics University of Arizona Tucson AZ United States Department of Physics The University of Texas at Arlington Arlington TX United States Physics Department University of Athens Athens Greece Physics Department National Technical University of Athens Zografou Greece Department of Physics The University of Texas at Austin Austin TX United States Institute of Physics Azerbaijan Academy of Sciences Baku Azerbaijan Institut de Física d'Altes Energies (IFAE) The Barcelona Institute of Science and Technology Barcelona Spain Institute of Physics University of Belgrade Belgrade Serbia Department for Physics and Technology University of Bergen Bergen Norway Physics Division Lawrence Berkeley National Laboratory University of California Berkeley CA United States Department of Physics Humboldt University Berlin Germany Albert Einstein Center for Fundamental Physics Laboratory for High Energy Physics University of Bern Bern Switzerland School of Physics and Astronomy University of Birmingham Birmingham United Kingdom Department of Physics Bogazici University Istanbul Turkey Department of Physics Engineering Gaziantep University Gaziantep Turkey Istanbul Bilgi University Faculty of Engineering and Natural Sciences Istanbul Turkey Bahcesehir University Faculty of Engineering and Natural Sciences Istanbul Turkey Centro de Investigaciones Universidad Antonio Narino Bogota Colombia INFN Sezione di Bologna Italy Dipartimento di Fis

This Letter presents a search for new resonances with mass larger than 250 GeV, decaying to a Z boson and a photon. The dataset consists of an integrated luminosity of 3.2 fb−1 of pp collisions collected at s=13 TeV w... 详细信息

This Letter presents a search for new resonances with mass larger than 250 GeV, decaying to a Z boson and a photon. The dataset consists of an integrated luminosity of 3.2 fb⁻¹ of pp collisions collected at s=13 TeV with the ATLAS detector at the Large Hadron Collider. The Z bosons are identified through their decays either to charged, light, lepton pairs (e⁺e⁻, μ⁺μ⁻) or to hadrons. The data are found to be consistent with the expected background in the whole mass range investigated and upper limits are set on the production cross section times decay branching ratio to Zγ of a narrow scalar boson with mass between 250 GeV and 2.75 TeV. © 2016 The Author(s)

关键词： Z bosons CROSS sections (Nuclear physics) PHOTON-photon interactions LARGE Hadron Collider (France & Switzerland) DILEPTON production NUCLEAR counters

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e-Onama: Mobile high performance computing for engineering research

e-Onama: Mobile high performance computing for engineering r...

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International Conference on Innovative computing Technology (INTECH)

作者： C V Deepu Nisha Kurkure Prashant Dinde Abhishek Das Abhinav Gupta Goldi Misra Centre for Development of Advanced Computing Pune Maharashtra IN High Performance Computing Solutions Group Centre for Development of Advanced Computing Pune India

With the fast growing popularity of smartphone technology, the percentage of people accessing critical information from their handheld devices such as tablets, and e-readers, is increasing rapidly. advanced computing devices are changing the paradigm of mobile communication. In this research paper, a solution called e-Onama is described in detail along with its applicability and future enhancement opportunities. e-Onama is an indigenously developed software solution by C-DAC which enables user to access HPC facility while on the move. This is an innovative product for addressing the needs of the open science and engineering community in HPC with ease. e-Onama has been developed for several mobile platforms like Windows, Linux and Android.

关键词： high performance computing Handheld computers Mobile communication Androids Humanoid robots Java Servers

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Designing an SLA protocol with renegotiation to maximize revenues for the CMAC platform

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Combined Workshops on Web Information systems Engineering, WISE 2011 and WISE 2012

作者： Galati, Adriano Djemame, Karim Fletcher, Martyn Jessop, Mark Weeks, Michael Hickinbotham, Simon McAvoy, John Collaborative Systems and Performance Group School of Computing University of Leeds LS2 9JT United Kingdom Advanced Computer Architecture Group Department of Computer Science University of York YO10 5DD United Kingdom Cybula Ltd. R and D Team Science Park York YO10 5DD United Kingdom

ISBN: (纸本)9783642383328

The emerging transformation from a product oriented economy to a service oriented economy based on Cloud environments envisions new scenarios where actual QoS mechanisms need to be redesigned. In such scenarios new models to negotiate and manage Service Level Agreements (SLAs) are necessary. An SLA is a formal contract which defines acceptable service levels to be provided by the Service Provider to its customers in measurable terms. This is meant to guarantee that consumers' service quality expectation can be achieved. In fact, the level of customer satisfaction is crucial in Cloud environments, making SLAs one of the most important and active research topics. The aim of this paper is to explore the possibility of integrating an SLA approach for Cloud services based on the CMAC (Condition Monitoring on A Cloud) platform which offers condition monitoring services in cloud computing environments to detect events on assets as well as data storage services. © 2013 Springer-Verlag.

关键词： Customer satisfaction

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Transparent and efficient shared-state management for optimistic simulations on multi-core machines

Transparent and efficient shared-state management for optimi...

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2012 IEEE 20th International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication systems, MASCOTS 2012

作者： Pellegrini, Alessandro Vitali, Roberto Peluso, Sebastiano Quaglia, Francesco High Performance and Dependable Computing Systems Research Group DIIAG Sapienza University of Rome Italy

ISBN: (纸本)9780769547930

Traditionally, Logical Processes (LPs) forming a simulation model store their execution information into disjoint simulations states, forcing events exchange to communicate data between each other. In this work we propose the design and implementation of an extension to the traditional Time Warp (optimistic) synchronization protocol for parallel/distributed simulation, targeted at shared-memory/multicore machines, allowing LPs to share parts of their simulation states by using global variables. In order to preserve optimism's intrinsic properties, global variables are transparently mapped to multi-version ones, so to avoid any form of safety predicate verification upon updates. Execution's consistency is ensured via the introduction of a new rollback scheme which is triggered upon the detection of an incorrect global variable's read. At the same time, efficiency in the execution is guaranteed by the exploitation of non-blocking algorithms in order to manage the multi-version variables' lists. Furthermore, our proposal is integrated with the simulation model's code through software instrumentation, in order to allow the application-level programmer to avoid using any specific API to mark or to inform the simulation kernel of updates to global variables. Thus we support full transparency. An assessment of our proposal, comparing it with a traditional message-passing implementation of variables' multi-version is provided as well. © 2012 IEEE.

关键词： Message passing

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Interactive visualization of brain-scale spiking activity

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BMC Neurosci 2013年第SUPPL 1期14卷 P110-P110页

作者： Christian Nowke Bernd Hentschel Torsten Kuhlen Maximilian Schmidt Sacha J van Albada Jochen M Eppler Rembrandt Bakker Markus Diesmann Virtual Reality Group RWTH Aachen University Aachen Germany JARA - High-Performance Computing RWTH Aachen University Aachen Germany Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) Jülich Research Centre Jülich Germany Donders Institute for Brain Cognition and Behavior Radboud University Nijmegen The Netherlands Medical Faculty RWTH Aachen University Aachen Germany

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Transparent and Efficient Shared-State Management for Optimistic Simulations on Multi-core Machines

Transparent and Efficient Shared-State Management for Optimi...

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International Symposium on Modeling, Analysis and Simulation of Computer and Telecommunication systems (MASCOTS)

作者： Alessandro Pellegrini Roberto Vitali Sebastiano Peluso Francesco Quaglia High Performance and Dependable Computing Systems Research Group DIIAG University of Roma La Sapienza Italy

关键词： Synchronization Proposals Protocols Kernel Arrays Computational modeling

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From laptops to supercomputers: a single highly scalable code base for spiking neuronal network simulations

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BMC Neuroscience 2013年第1期14卷 1-2页

作者： Susanne Kunkel Abigail Morrison Markus Diesmann Maximilian Schmidt Jochen M Eppler Moritz Helias Hans E Plesser Jun Igarashi Tomoki Fukai Gen Masumoto Shin Ishii Simulation Laboratory Neuroscience - Bernstein Facility Simulation and Database Technology Institute for Advanced Simulation Jülich Aachen Research Alliance Jülich Research Centre Germany Institute of Neuroscience and Medicine (INM-6) and Institute for Advanced Simulation (IAS-6) Jülich Research Centre and JARA Germany Bernstein Center Freiburg Albert-Ludwig University of Freiburg Germany Institute of Cognitive Neuroscience Faculty of Psychology Ruhr-University Bochum Germany Medical Faculty RWTH University Aachen Germany Laboratory for Neural Circuit Theory RIKEN Brain Science Institute Wako Japan Department of Mathematical Sciences and Technology Norwegian University of Life Sciences Aas Norway High-Performance Computing Team RIKEN Computational Science Research Program Kobe Japan Integrated Systems Biology Laboratory Department of Systems Science Graduate School of Informatics Kyoto University Japan

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Biomolecular network visualization based on CPSE-Bio

Biomolecular network visualization based on CPSE-Bio

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2012 7th International Conference on computing and Convergence Technology (ICCIT, ICEI and ICACT), ICCCT 2012

作者： Xie, Jiang Yi, Ronggui Huiran, Zhang Zhang, Wu Kawata, Shigeo School of Computer Engineering and Science Shanghai University Shanghai 200444 China Institute of Systems Biology Shanghai University Shanghai 200444 China High Performance Computing Center Shanghai University Shanghai 200444 China Dept. of Advanced Interdisciplinary Sciences Utsunomiya University Utsunomiya 321-8585 Japan

ISBN: (纸本)9788994364216

Biomolecular network is an important research subject of the bioinformatics. A crucial step in biological studies is to understand the biomolecular networks. Visualization is helpful for complex biomolecular network analysis because the network scale is rapidly expanding along with the growth of biological data sets. A novel biomolecular network visualization tool, BNVC (Biomolecular Network Visualization based on Cytoscape Web) has been developed on CPSE-Bio (Cloud based Problem Solving Environment for Bioinformatics) in this paper. The CPSE-Bio is a Problem-Solving-Environment for bioinformatics based on cloud computing platform. The BNVC, as a web-based application, is designed to visualize and analyze complex biomolecular networks, particularly compare two similar networks, which is the first web-based tool to analysis alignment status of complex biomolecular networks based on Cytoscape Web. © 2012 AICIT.

关键词： Data visualization

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