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arXiv 2019年

作者： Xu, Yue Xu, Wenjun Wang, Zhi Lin, Jiaru Cui, Shuguang Key Lab of Universal Wireless Communications Ministry of Education Beijing University of Posts and Telecommunications Beijing100876 China State Key Laboratory of Networking and Switching Technology Beijing University of Posts and Telecommunications Beijing100876 China Shenzhen Research Institute of Big Data School of Science and Engineering Chinese University of Hong Kong Shenzhen518172 China Department of Electrical and Computer Engineering University of California DavisCA95616 United States

—In this paper, we propose a deep reinforcement learning (DRL) based mobility load balancing (MLB) algorithm along with a two-layer architecture to solve the large-scale load balancing problem for ultra-dense networks (UDNs). Our contribution is three-fold. First, this work proposes a two-layer architecture to solve the large-scale load balancing problem in a self-organized manner. The proposed architecture can alleviate the global traffic variations by dynamically grouping small cells into self-organized clusters according to their historical loads, and further adapt to local traffic variations through intra-cluster load balancing afterwards. Second, for the intra-cluster load balancing, this paper proposes an off-policy DRL-based MLB algorithm to autonomously learn the optimal MLB policy under an asynchronous parallel learning framework, without any prior knowledge assumed over the underlying UDN environments. Moreover, the algorithm enables joint exploration with multiple behavior policies, such that the traditional MLB methods can be used to guide the learning process thereby improving the learning efficiency and stability. Third, this work proposes an offline-evaluation based safeguard mechanism to ensure that the online system can always operate with the optimal and well-trained MLB policy, which not only stabilizes the online performance but also enables the exploration beyond current policies to make full use of machine learning in a safe way. Empirical results verify that the proposed framework outperforms the existing MLB methods in general UDN environments featured with irregular network topologies, coupled interferences, and random user movements, in terms of the load balancing performance. Copyright © 2019, The Authors. All rights reserved.

关键词： Deep learning

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Coevolution spreading in complex networks

arXiv

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arXiv 2019年

作者： Wang, Wei Liu, Quan-Hui Liang, Junhao Hu, Yanqing Zhou, Tao Cybersecurity Research Institute Sichuan University Chengdu610065 China Big Data Research Center University of Electronic Science and Technology of China Chengdu610054 China Compleχ Lab University of Electronic Science and Technology of China Chengdu610054 China College of Computer Science Sichuan University Chengdu610065 China School of Mathematics Sun Yat-Sen University Guangzhou510275 China School of Data and Computer Science Sun Yat-sen University Guangzhou510006 China Southern Marine Science and Engineering Guangdong Laboratory Zhuhai519082 China

The propagations of diseases, behaviors and information in real systems are rarely independent of each other, but they are coevolving with strong interactions. To uncover the dynamical mechanisms, the evolving spatiotemporal patterns and critical phenomena of networked coevolution spreading are extremely important, which provide theoretical foundations for us to control epidemic spreading, predict collective behaviors in social systems, and so on. The coevolution spreading dynamics in complex networks has thus attracted much attention in many disciplines. In this review, we introduce recent progress in the study of coevolution spreading dynamics, emphasizing the contributions from the perspectives of statistical mechanics and network science. The theoretical methods, critical phenomena, phase transitions, interacting mechanisms, and effects of network topology for four representative types of coevolution spreading mechanisms, including the coevolution of biological contagions, social contagions, epidemic-awareness, and epidemic-resources, are presented in detail, and the challenges in this field as well as open issues for future studies are also discussed. Copyright © 2019, The Authors. All rights reserved.

关键词： Complex networks

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bigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2023年第6期20卷 824-835页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

bigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. We observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

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Approximate entropy and sample entropy analysis of magnetoencephalography of depression 2

Approximate entropy and sample entropy analysis of magnetoen...

引用

2nd International Conference on Biological Information and Biomedical engineering, BIBE 2018

作者： Hu, Hui Ding, Chuchu Cui, Yinghan Yan, Wei Wang, Jun Li, Jin Hou, Fengzhen Smart Health Big Data Analysis and Location Services Engineering Lab of Jiangsu Province Nanjing University of Posts and Telecommunications Nanjing China Department of Psychiatry The Affiliated Brain Hospital of Nanjing Medical University Nanjing China College of Physics and Information Technology Shaanxi Normal University Xi'an China School of Science China Pharmaceutical University Nanjing China

ISBN: (纸本)9783800747276

In this paper, approximate entropy and sample entropy are applied to the study of magnetoencephalography, the entropy of the magnetoencephalography of the depressive and normal people is analyzed under the positive, negative and neutral mood stimuli. The results showed that the approximate entropy of the magnetoencephalography in patients with depression is lower than that in normal persons under positive, negative and neutral emotional stimuli, indicating that the response of depression patients to emotional stimuli is weaker than that of normal persons;the relative differences of the approximate entropy of magnetoencephalography in frontal lobe are most obvious among depressed patients and normal people, which can be used as the auxiliary basis for clinical diagnosis. At the same time, sample entropy is used to analyze the data and get similar results with approximate entropy, but the relative difference is more obvious than that of approximate entropy. Therefore, compared with approximate entropy, sample entropy is more suitable for the distinction between patients with depression and normal persons. © VDE VERLAG GMBH - Berlin - Offenbach.

关键词： Entropy

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Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

arXiv

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arXiv 2025年

作者： Sun, Yingying Jun, A. Liu, Zhiwei Sun, Rui Qian, Liujia Payne, Samuel H. Bittremieux, Wout Ralser, Markus Li, Chen Chen, Yi Dong, Zhen Perez-Riverol, Yasset Khan, Asif Sander, Chris Aebersold, Ruedi Vizcaíno, Juan Antonio Krieger, Jonathan R. Yao, Jianhua Wen, Han Zhang, Linfeng Zhu, Yunping Xuan, Yue Sun, Benjamin Boyang Qiao, Liang Hermjakob, Henning Tang, Haixu Gao, Huanhuan Deng, Yamin Zhong, Qing Chang, Cheng Bandeira, Nuno Li, Ming Weinan, E. Sun, Siqi Yang, Yuedong Omenn, Gilbert S. Zhang, Yue Xu, Ping Fu, Yan Liu, Xiaowen Overall, Christopher M. Wang, Yu Deutsch, Eric W. Chen, Luonan Cox, Jürgen Demichev, Vadim He, Fuchu Huang, Jiaxing Jin, Huilin Liu, Chao Li, Nan Luan, Zhongzhi Song, Jiangning Yu, Kaicheng Wan, Wanggen Wang, Tai Zhang, Kang Zhang, Le Bell, Peter A. Mann, Matthias Zhang, Bing Guo, Tiannan Affiliated Hangzhou First People’s Hospital State Key Laboratory of Medical Proteomics School of Medicine Westlake University Zhejiang Province Hangzhou China Westlake Center for Intelligent Proteomics Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Province Hangzhou China Biology Department Brigham Young University ProvoUT84602 United States Department of Computer Science University of Antwerp Antwerp2020 Belgium Department of Biochemistry CharitéUniversitätsmedizin Berlin Berlin Germany Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University MelbourneVICVIC 3800 Australia Wellcome Genome Campus Hinxton CambridgeCB10 1SD United Kingdom Harvard Medical School Ludwig Center at Harvard United States Harvard Medical School Broad Institute Ludwig Center at Harvard Dana-Farber Cancer Institute United States Department of Biology Institute of Molecular Systems Biology ETH Zürich Zürich Switzerland Bruker Ltd. MiltonONL9T 6P4 Canada AI for Life Sciences Lab Tencent Shenzhen518057 China State Key Laboratory of Medical Proteomics AI for Science Institute Beijing100080 China Beijing Institute of Lifeomics Beijing102206 China Thermo Fisher Scientific GmbH Hanna-Kunath Str. 11 Bremen28199 Germany Informatics and Predictive Sciences Research Bristol Myers Squibb United States Department of Chemistry Fudan University Songhu Road 2005 Shanghai200438 China Department of Computer Science Luddy School of Informatics Computing and Engineering Indiana University IN47408 United States ProCan® Children’s Medical Research Institute Faculty of Medicine and Health The University of Sydney WestmeadNSW Australia La Jolla CA United States Central China Institute of Artificial Intelligence University of Waterloo Canada AI for Science Institute Center for Machine Learning Research School of Mathematical Sciences Peking University China Research Institute of Intelligent Complex Systems Fudan U

Artificial intelligence (AI) is transforming scientific research, including proteomics. Advances in mass spectrometry (MS)-based proteomics data quality, diversity, and scale, combined with groundbreaking AI techniques, are unlocking new challenges and opportunities in biological discovery. Here, we highlight key areas where AI is driving innovation, from data analysis to new biological insights. These include developing an AI-friendly ecosystem for proteomics data generation, sharing, and analysis;improving peptide and protein identification and quantification;characterizing protein-protein interactions and protein complexes;advancing spatial and perturbation proteomics;integrating multi-omics data;and ultimately enabling AI-empowered virtual cells. © 2025, CC BY.

关键词： Biotic

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A Comparative Study on Various Deep Learning Techniques for Thai NLP Lexical and Syntactic Tasks on Noisy data

A Comparative Study on Various Deep Learning Techniques for ...

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International Joint Conference on Computer Science and Software engineering (JCSSE)

作者： Amarin Jettakul Chavisa Thamjarat Kawin Liaowongphuthorn Can Udomcharoenchaikit Peerapon Vateekul Prachya Boonkwan Chulalongkorn University Big Data Analytics and IoT Center (CUBIC) Department of Computer Engineering Faculty of EngineeringChulalongkorn University Bangkok Thailand NECTEC Language and Semantic Technology Lab (LST) Pathumthani Thailand

In Natural Language Processing (NLP), there are three fundamental tasks of NLP which are Tokenization being a part of a lexical level, Part-of-Speech tagging (POS) and Named-Entity-Recognition (NER) being parts of a syntactic level. Recently, there have been many deep learning researches showing their success in many domains. However, there has been no comparative study for Thai NLP to suggest the most suitable technique for each task yet. In this paper, we aim to provide a performance comparison among various deep learning-based techniques on three NLP tasks, and study the effect on synthesized OOV words and the OOV handling algorithm with Levenshtein distance had been provided due to the fact that most existing works relied on a set of vocabularies in the trained model and not being fit for noisy text in the real use case. Our three experiments were conducted on BEST 2010 I2R, a standard Thai NLP corpus on F1 measurement, with the different percentage of noises having been synthesized. Firstly, for Tokenization, the result shows that Synthai, a jointed bidirectional LSTM, has the best performance. Additionally, for POS, bi-directional LSTM with CRF has obtained the best performance. For NER, variational bi-directional LSTM with CRF has outperformed other methods. Finally, the effect of noises reduces the performance of all algorithms on these foundation tasks and the result shows that our OOV handling technique could improve the performance on noisy data.

关键词： Task analysis Natural language processing Tagging Machine learning Noise measurement Training Memory management

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New parameter-free mobility model: Opportunity priority selection model

arXiv

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arXiv 2018年

作者： Liu, Erjian Yan, Xiao-Yong Key Lab. of Integrated Transportation Big Data Application Technology for Transportation Industry Beijing Jiaotong University Beijing100044 China Institute of Transportation System Science and Engineering Beijing Jiaotong University Beijing100044 China Big Data Research Center University of Electronic Science and Technology of China Chengdu611731 China

Predicting human mobility patterns has many practical applications in urban planning, traffic engineering, infectious disease epidemiology, emergency management and location-based services. Developing a universal model capable of accurately predicting the mobility fluxes between locations is a fundamental and challenging problem in regional economics and transportation science. Here, we propose a new parameter-free model named opportunity priority selection model as an alternative in human mobility prediction. The basic assumption of the model is that an individual will select destination locations that present higher opportunity benefits than the location opportunities of the origin and the intervening opportunities between the origin and destination. We use real mobility data collected from a number of cities and countries to demonstrate the predictive ability of this simple model. The results show that the new model offers universal predictions of intracity and intercity mobility patterns that are consistent with real observations, thus suggesting that the proposed model better captures the mechanism underlying human mobility than previous models. Copyright © 2018, The Authors. All rights reserved.

关键词： Forecasting

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iSplit LBI: Individualized partial ranking with ties via split LBI

arXiv

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arXiv 2019年

作者： Xu, Qianqian Sun, Xinwei Yang, Zhiyong Cao, Xiaochun Huang, Qingming Yao, Yuan Key Lab. of Intelligent Information Processing Institute of Computing Technology CAS Microsoft Research Asia State Key Laboratory of Information Security Institute of Information Engineering CAS School of Cyber Security University of Chinese Academy of Sciences School of Computer Science and Tech. University of Chinese Academy of Sciences Key Laboratory of Big Data Mining and Knowledge Management CAS Peng Cheng Laboratory Department of Mathematics Hong Kong University of Science and Technology Hong Kong

Due to the inherent uncertainty of data, the problem of predicting partial ranking from pairwise comparison data with ties has attracted increasing interest in recent years. However, in real-world scenarios, different individuals often hold distinct preferences. It might be misleading to merely look at a global partial ranking while ignoring personal diversity. In this paper, instead of learning a global ranking which is agreed with the consensus, we pursue the tie-aware partial ranking from an individualized perspective. Particularly, we formulate a unified framework which not only can be used for individualized partial ranking prediction, but also be helpful for abnormal user selection. This is realized by a variable splitting-based algorithm called iSplitLBI. Specifically, our algorithm generates a sequence of estimations with a regularization path, where both the hyperparameters and model parameters are updated. At each step of the path, the parameters can be decomposed into three orthogonal parts, namely, abnormal signals, personalized signals and random noise. The abnormal signals can serve the purpose of abnormal user selection, while the abnormal signals and personalized signals together are mainly responsible for individual partial ranking prediction. Extensive experiments on simulated and real-world datasets demonstrate that our new approach significantly outperforms state-of-the-art alternatives. The code is now availiable at https://***/qianqianxu010/ NeurIPS2019-iSplitLBI. Copyright © 2019, The Authors. All rights reserved.

关键词： Forecasting

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Classification of late-stage wheat powdery mildew based on Isomap and PNN analyses

引用

International Agricultural engineering Journal 2018年第4期 404-410页

作者： Huang, Linsheng Wang, Yulong Guo, Wei Zhang, Qing Yang, Xiaodong National Engineering Research Center for Agro-Ecological Big Data Analysis & Application Anhui University Hefei230601 China Beijing Research Center for Information Technology in Agriculture Beijing100097 China College of Information and Management Science Henan Agricultural University Zhengzhou450002 China

In order to provide assistance in precisely distinguishing different severities of wheat powdery mildew, imaging hyperspectral data of disease-infected and healthy wheat leaves were collected in the late growth stage. After conversion and enhancement of hyperspectral data were preprocessed, the isometric feature mapping (Isomap) was used to reduce the original normalized spectral data from 178 samples. Of these, 136 samples were used as training samples, and the rest were seen as test samples. The characteristics of the reduced dimension data were input into a probabilistic neural network (PNN). A model of classification and recognition was established, resulting in 100% prediction accuracy for healthy samples, 90% for samples with moderate diseased infection, and 80% for samples with mild and severe disease infection, and an overall recognition accuracy of 88% for the model. These results provide important theoretical basis for accurately real-time disease assessment, and also guide the agricultural production and disease prevention. © 2018, Asian Association for Agricultural engineering. All rights reserved.

关键词： Neural networks

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Designing preamplifier for sensing atmospheric electrostatic field strength via supercapacitive sensor

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Journal of Physics: Conference Series 2020年第1期1607卷

作者： Changhao Wu Yi Xiong Wei Zeng National Engineering Research Center for Agro-Ecological Big Data Analysis and Application School of Electronics and Information Engineering Anhui University Hefei 230601 People's Republic of China Science and Technology Institute Hubei Key Laboratory of Biomass Fibers and Eco-Dyeing and Finishing Wuhan Textile University Wuhan 430073 People's Republic of China School of Physics and Technology MOE Key Laboratory of Artificial Micro- and Nano-Structures and Center for Electron Microscopy Wuhan University Wuhan 430072 People's Republic of China

In order to effectively obtain the signal from sensor, the analogy signal needs to be amplified and then converted into a digital signal for matching to the sensor characteristics. With a supercapacitive electric field sensor based on graphene aerogel, the response current signal from the electric field sensor is weak and unstable. Herein, a high gain and low noise preamplifier is developed, and an amplifier circuit with double T-type feedback network is proposed to reduce the Johnson noise for the amplifier. This design can reduce the thermal noise of resistance by using the smaller resistance under the same gain, and it can effectively reduce the interference of peak noise by adding the feedback capacitance, so as to improve the detection accuracy. The simulation results show that under the same gain condition, the Johnson noise can be reduced by 46% and the detection accuracy can be improved by 12% compared with the traditional T-type feedback network.

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