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arXiv 2021年

作者： Yahiaoui, Riad Chase, Zizwe A. Kyaw, Chan Tay, Fuyang Baydin, Andrey Noe, G. Timothy Song, Junyeob Kono, Junichiro Agrawal, Amit Bamba, Motoaki Searles, Thomas A. Department of Physics and Astronomy Howard University WashingtonDC20059 United States Department of Electrical and Computer Engineering Rice University HoustonTX70005 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Smalley-Curl Institute Rice University HoustonTX77005 United States Physical Measurement Laboratory National Institute of Standards and Technology GaithersburgMD20899 United States Department of Physics and Astronomy Rice University HoustonTX77005 United States Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States Maryland NanoCenter University of Maryland College ParkMD20742 United States The Hakubi Center for Advanced Research Kyoto University Kyoto606-8502 Japan Department of Physics I Kyoto University Kyoto606-8502 Japan Department of Physics Massachusetts Institute of Technology CambridgeMA02139 United States

A system of N two-level atoms cooperatively interacting with a photonic field can be described as a single giant atom coupled to the field with interaction strength ∝ √N. This enhancement, known as Dicke cooperativity in quantum optics, has recently become an indispensable element in quantum information technology based on strong light-matter coupling. Here, we extend the coupling beyond the standard light-matter interaction paradigm, emulating Dicke cooperativity in a terahertz metasurface with N meta-atoms. Cooperative enhancement manifested in the form of matter-matter coupling, through the hybridization of localized surface plasmon resonance in individual meta-atoms and surface lattice resonance due to the periodic array of the meta-atoms. By varying the lattice constant of the array, we observe a clear anticrossing behavior, a signature of strong coupling. Furthermore, through engineering of the capacitive split-gap in the meta-atoms, the coupling rate was cooperatively enhanced into the ultrastrong coupling regime by a factor of √N. This room-temperature technology serves as a convenient quantum emulator of the dynamics of a qubit with a giant dipole moment coherently driven by a single bosonic field. Copyright © 2021, The Authors. All rights reserved.

关键词： Atoms

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Organ-on-a-Chip: Ex vivo Dynamics of Human Glioblastoma Cells in a Microvasculature-on-a-Chip System Correlates with Tumor Heterogeneity and Subtypes (Adv. Sci. 8/2019)

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Advanced science 2019年第8期6卷 1970046-1970046页

作者： Yang Xiao Dongjoo Kim Burak Dura Kerou Zhang Runchen Yan Huamin Li Edward Han Joshua Ip Pan Zou Jun Liu Ann Tai Chen Alexander O. Vortmeyer Jiangbing Zhou Rong Fan Department of Biomedical Engineering Yale University New Haven CT 06520 USA School of Computer Science Carnegie Mellon University Pittsburgh PA 15213 USA Applied Math Program Yale University New Haven CT 06520 USA Department of Neurosurgery Yale School of Medicine New Haven CT 06520 USA Department of Pathology Indiana University Health Pathology Laboratory Indianapolis IN 46202 USA Yale Comprehensive Cancer Center New Haven CT 06520 USA

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Chiral Phonons with Giant Magnetic Moments in a Topological Crystalline Insulator

arXiv

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arXiv 2022年

作者： Hernandez, Felix G.G. Baydin, Andrey Chaudhary, Swati Tay, Fuyang Katayama, Ikufumi Takeda, Jun Nojiri, Hiroyuki Okazaki, Anderson K. Rappl, Paulo H.O. Abramof, Eduardo Rodriguez-Vega, Martin Fiete, Gregory A. Kono, Junichiro Instituto de Física Universidade de São Paulo SP São Paulo05508-090 Brazil Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Physics The University of Texas at Austin AustinTX78712 United States Department of Physics Northeastern University BostonMA02115 United States Department of Physics Massachusetts Institute of Technology CambridgeMA02139 United States Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Physics Graduate School of Engineering Science Yokohama National University Yokohama240-8501 Japan Institute for Materials Research Tohoku University Sendai980-8577 Japan Instituto Nacional de Pesquisas Espaciais SP São José dos Campos12201-970 Brazil Department of Physics and Astronomy Rice University HoustonTX77005 United States Department of Material Science and NanoEngineering Rice University HoustonTX77005 United States

We have studied the magnetic response of transverse optical phonons in Pb1−xSnxTe films. Polarization-dependent terahertz magnetospectroscopy measurements revealed Zeeman splittings and diamagnetic shifts, demonstrating that these phonon modes become chiral in magnetic fields. Films in the topological crystalline insulator phase (x > 0.32) exhibited magnetic moment values that are larger than those for topologically trivial films (x Copyright © 2022, The Authors. All rights reserved.

关键词： Phonons

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Spectral evidence for unidirectional charge density wave in detwinned BaNi2As2

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Physical Review B 2023年第8期108卷 L081104-L081104页

作者： Yucheng Guo Mason Klemm Ji Seop Oh Yaofeng Xie Bing-Hua Lei Luca Moreschini Cheng Chen Ziqin Yue Sergey Gorovikov Tor Pedersen Matteo Michiardi Sergey Zhdanovich Andrea Damascelli Jonathan Denlinger Makoto Hashimoto Donghui Lu Chris Jozwiak Aaron Bostwick Eli Rotenberg Sung-Kwan Mo Rob G. Moore Junichiro Kono Robert J. Birgeneau David J. Singh Pengcheng Dai Ming Yi Department of Physics and Astronomy Rice University Houston Texas 77005 USA Advanced Light Source Lawrence Berkeley National Laboratory Berkeley California 94720 USA Department of Physics University of California Berkeley California 94720 USA Department of Physics and Astronomy University of Missouri Columbia Missouri 65211 USA Materials Science Division Lawrence Berkeley National Laboratory Berkeley California 94720 USA Department of Physics University of Oxford Oxford OX1 3PU United Kingdom Applied Physics Graduate Program Smalley-Curl Institute Rice University Houston Texas 77005 USA Canadian Light Source Inc. 44 Innovation Boulevard Saskatoon SK S7N 2V3 Canada Department of Physics and Astronomy University of British Columbia Vancouver British Columbia V6T 1Z1 Canada Quantum Matter Institute University of British Columbia Vancouver British Columbia V6T 1Z4 Canada Max Planck Institute for Chemical Physics of Solids Nöthnitzer Straße 40 01187 Dresden Germany Stanford Synchrotron Radiation Lightsource SLAC National Accelerator Laboratory Menlo Park California 94025 USA Materials Science and Technology Division Oak Ridge National Laboratory Oak Ridge Tennessee 37831 USA Department of Electrical and Computer Engineering Rice University Houston Texas 77005 USA Smalley-Curl Institute Rice University Houston Texas 77005 USA Department of Materials Science and NanoEngineering Rice University Houston Texas 77005 USA Department of Chemistry University of Missouri Columbia Missouri 65211 USA

In the iron-based superconductors, unconventional superconductivity emerges in proximity to intertwined electronic orders consisting of an electronic nematic order and a spin density wave (SDW). Recently, BaNi2As2, like its well-known iron-based analog BaFe2As2, has been discovered to host a symmetry-breaking structural transition but coupled to a unidirectional charge density wave (CDW) instead of SDW, providing a novel platform to study intertwined orders. Here, through a systematic angle-resolved photoemission spectroscopy study combined with a detwinning B1g uniaxial strain, we identify distinct spectral evidence of band evolution due to the structural transition as well as CDW-induced band folding. In contrast to the nematicity and spin density wave in BaFe2As2, the structural and CDW order parameters in BaNi2As2 are observed to be strongly coupled and do not separate in the presence of uniaxial strain. Furthermore, no nematic band splitting is resolved above the structural transition. Our measurements point to a likely lattice origin of the CDW order in BaNi2As2.

关键词： Charge density waves Nematic phase transition Iron-based superconductors Angle-resolved photoemission spectroscopy

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Surveillance of avian influenza through bird guano in remote regions of the global south to uncover transmission dynamics

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Nature communications 2025年第1期16卷 4900页

作者： Dhammika Leshan Wannigama Mohan Amarasiri Phatthranit Phattharapornjaroen Cameron Hurst Charin Modchang John Jefferson V Besa Kazuhiko Miyanaga Longzhu Cui Stefan Fernandez Angkana T Huang Puey Ounjai W K C P Werawatte Ali Hosseini Rad S M Porames Vatanaprasan Dylan John Jay Thammakorn Saethang Sirirat Luk-In Phitsanuruk Kanthawee Wanwara Thuptimdang Ratana Tacharoenmuang Bernadina Cynthia S P H Spencer Vitharana Natharin Ngamwongsatit Hitoshi Ishikawa Takashi Furukawa Yangzhong Wang Andrew C Singer Naveen Kumar Devanga Ragupathi Tanittha Chatsuwan Kazunari Sei Asuka Nanbo Asada Leelahavanichkul Talerngsak Kanjanabuch Hiroshi Hamamoto Paul G Higgins Daisuke Sano Anthony Kicic José O Valdebenito Jonas Bonnedahl Sam Trowsdale Parichart Hongsing Aisha Khatib Kenji Shibuya Shuichi Abe Department of Infectious Diseases Faculty of Medicine Yamagata University Yamagata Japan. leshanwannigama@med.id.yamagata-u.ac.jp. Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan. leshanwannigama@med.id.yamagata-u.ac.jp. Pathogen Hunter's Research Collaborative Team Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan. leshanwannigama@med.id.yamagata-u.ac.jp. Yamagata Prefectural University of Health Sciences Kamiyanagi Yamagata Japan. leshanwannigama@med.id.yamagata-u.ac.jp. The Lygodium Ceylon Health and Environmental Policy Research Center Colombo Sri Lanka. leshanwannigama@med.id.yamagata-u.ac.jp. Biofilms and Antimicrobial Resistance Consortium of ODA receiving countries The University of Sheffield Sheffield UK. leshanwannigama@med.id.yamagata-u.ac.jp. Pathogen Hunter's Research Collaborative Team Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan. Department of Civil and Environmental Engineering Graduate School of Engineering Tohoku University Sendai Miyagi Japan. Faculty of Health Science Technology Chulabhorn Royal Academy Bangkok Thailand. HRH Princess Chulabhorn Disaster and Emergency Medicine Center Chulabhorn Royal Academy Bangkok Thailand. Department of Clinical Epidemiology Faculty of Medicine Thammasat University Rangsit Thailand. Center of Excellence in Applied Epidemiology Thammasat University Rangsit Thailand. Mater Research Institute University of Queensland Brisbane QLD Australia. Biophysics Group Department of Physics Faculty of Science Mahidol University Bangkok Thailand. Centre of Excellence in Mathematics MHESI Bangkok Thailand. Thailand Center of Excellence in Physics Ministry of Higher Education Science Research and Innovation Bangkok Thailand. Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan. Co

Avian influenza viruses (AIVs) pose a growing global health threat, particularly in low- and middle-income countries (LMICs), where limited surveillance capacity and under-resourced healthcare systems hinder timely detection and response. Migratory birds play a significant role in the transboundary spread of AIVs, yet data from key regions along migratory flyways remain sparse. To address these surveillance gaps, we conducted a study between December 2021 and February 2023 using fresh bird guano collected across 10 countries in the Global South. Here, we show that remote, uninhabited regions in previously unsampled areas harbor a high diversity of AIV strains, with H5N1 emerging as the most prevalent. Some of these H5N1 samples also carry mutations that may make them less responsive to the antiviral drug oseltamivir. Our findings documented the presence of AIVs in several underrepresented regions and highlighted critical transmission hotspots where viral evolution may be accelerating. These results underscore the urgent need for geographically targeted surveillance to detect emerging variants, inform public health interventions, and reduce the risk of zoonotic spillover.

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Automated osteoporosis classification and T-score prediction using hip radiographs via deep learning algorithm

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Therapeutic Advances in Musculoskeletal Disease 2024年 16卷

作者： Chen, Yu-Pin Chan, Wing P. Zhang, Han-Wei Tsai, Zhi-Ren Peng, Hsiao-Ching Huang, Shu-Wei Jang, Yeu-Chai Kuo, Yi-Jie Department of Orthopedics Wan Fang Hospital Taipei Medical University Taipei City Taiwan Department of Orthopedics School of Medicine College of Medicine Taipei Medical University Taipei City Taiwan Department of Radiology Wan Fang Hospital Taipei Medical University Taipei City Taiwan Department of Radiology School of Medicine College of Medicine Taipei Medical University Taipei City Taiwan Biomedica Corporation New Taipei City Taiwan Program for Aging China Medical University Taichung City Taiwan Institute of Population Health Sciences National Health Research Institutes Miaoli County Taiwan Department of Electrical and Computer Engineering Institute of Electrical Control Engineering National Yang Ming Chiao Tung University Hsinchu County Hsinchu City Taiwan Department of Computer Science and Information Engineering Asia University Taichung City Taiwan Department of Medical Research China Medical University Hospital China Medical University Taichung City Taiwan Center for Precision Medicine Research Asia University Taichung City Taiwan Department of Applied Science National Taitung University Taitung County Taitung City Taiwan Department of Orthopedics Wan Fang Hospital Taipei Medical University No. 111 Sec. 3 Xinglong Road Wenshan Taipei 11696 Taiwan Department of Orthopedics School of Medicine College of Medicine Taipei Medical University Taipei Taiwan

Background: Despite being the gold standard for diagnosing osteoporosis, dual-energy X-ray absorptiometry (DXA) is an underutilized screening tool for osteoporosis. Objectives: This study proposed and validated a controllable feature layer of a convolutional neural network (CNN) model with a preprocessing image algorithm to classify osteoporosis and predict T-score on the proximal hip region via simple hip radiographs. Design: This was a single-center, retrospective study. Methods: An image dataset of 3460 unilateral hip images from 1730 patients (age ⩾50 years) was retrospectively collected with matched DXA assessment for T-score for the targeted proximal hip regions to train (2473 unilateral hip images from 1430 patients) and test (497 unilateral hip images from 300 patients) the proposed CNN model. All images were processed with a fully automated CNN model, X1AI-Osteo. Results: The proposed screening tool illustrated a better performance (sensitivity: 97.2%;specificity: 95.6%;positive predictive value: 95.7%;negative predictive value: 97.1%;area under the curve: 0.96) than the open-sourced CNN models in predicting osteoporosis. Moreover, when combining variables, including age, body mass index, and sex as features in the training metric, there was high consistency in the T-score on the targeted hip regions between the proposed CNN model and the DXA (r = 0.996, p < 0.001). Conclusion: The proposed CNN model may identify osteoporosis and predict T-scores on the targeted hip regions from simple hip radiographs with high accuracy, highlighting the future application for population-based opportunistic osteoporosis screening with low cost and high adaptability for a broader population at risk. Trial registration: TMU-JIRB N201909036. © The Author(s), 2024.

关键词： deep learning neural network osteoporosis radiographs T-score

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Magnetic Control of Soft Chiral Phonons in PbTe

arXiv

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arXiv 2021年

作者： Baydin, Andrey Hernandez, Felix G.G. Rodriguez-Vega, Martin Okazaki, Anderson K. Tay, Fuyang Timothy Noe, G. Katayama, Ikufumi Takeda, Jun Nojiri, Hiroyuki Rappl, Paulo H.O. Abramof, Eduardo Fiete, Gregory A. Kono, Junichiro Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Smalley-Curl Institute Rice University HoustonTX77005 United States Instituto de Física Universidade de São Paulo SP São Paulo05508-090 Brazil Theoretical Division Los Alamos National Laboratory Los AlamosNM87545 United States Laboratório Associado de Sensores e Materiais Instituto Nacional de Pesquisas Espaciais SP São José dos Campos12201-970 Brazil Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Physics Graduate School of Engineering Science Yokohama National University Yokohama240-8501 Japan Institute for Materials Research Tohoku University Sendai980-8577 Japan Department of Physics Northeastern University BostonMA02115 United States Department of Physics Massachusetts Institute of Technology CambridgeMA02139 United States Department of Physics and Astronomy Rice University HoustonTX77005 United States Department of Material Science and NanoEngineering Rice University HoustonTX77005 United States

PbTe crystals have a soft transverse optical phonon mode in the terahertz frequency range, which is known to efficiently decay into heat-carrying acoustic phonons, resulting in anomalously low thermal conductivity. Here, we studied this phonon via polarization-dependent terahertz spectroscopy. We observed softening of this mode with decreasing temperature, indicative of incipient ferroelectricity, which we explain through a model including strong anharmonicity with a quartic displacement term. In magnetic fields up to 25 T, the phonon mode splits into two modes with opposite handedness, exhibiting circular dichroism. Their frequencies display Zeeman splitting together with an overall diamagnetic shift with increasing magnetic field. Using a group-theoretical approach, we demonstrate that these observations are the result of magnetic field-induced morphic changes in the crystal symmetries through the Lorentz force exerted on the lattice ions. Thus, our study reveals a novel process of controlling phonon properties in a soft ionic lattice by a strong magnetic field. Copyright © 2021, The Authors. All rights reserved.

关键词： Magnetic fields

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QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

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Current Protocols in Bioinformatics 2020年第1期70卷 e100页

作者： Estaki, Mehrbod Jiang, Lingjing Bokulich, Nicholas A. McDonald, Daniel González, Antonio Kosciolek, Tomasz Martino, Cameron Zhu, Qiyun Birmingham, Amanda Vázquez-Baeza, Yoshiki Dillon, Matthew R. Bolyen, Evan Caporaso, J. Gregory Knight, Rob Department of Pediatrics University of California San Diego La Jolla CA United States Division of Biostatistics University of California San Diego La Jolla CA United States Center for Applied Microbiome Science Pathogen and Microbiome Institute Northern Arizona University Flagstaff AZ United States Department of Biological Sciences Northern Arizona University Flagstaff AZ United States Małopolska Centre of Biotechnology Jagiellonian University Kraków Poland Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA United States Center for Microbiome Innovation University of California San Diego La Jolla CA United States Center for Computational Biology and Bioinformatics University of California San Diego La Jolla CA United States Jacobs School of Engineering University of California San Diego La Jolla CA United States Department of Computer Science and Engineering University of California San Diego La Jolla CA United States Department of Bioengineering University of California San Diego La Jolla CA United States

QIIME 2 is a completely re-engineered microbiome bioinformatics platform based on the popular QIIME platform, which it has replaced. QIIME 2 facilitates comprehensive and fully reproducible microbiome data science, improving accessibility to diverse users by adding multiple user interfaces. QIIME 2 can be combined with Qiita, an open-source web-based platform, to re-use available data for meta-analysis. The following basic protocol describes how to install QIIME 2 on a single computer and analyze microbiome sequence data, from processing of raw DNA sequence reads through generating publishable interactive figures. These interactive figures allow readers of a study to interact with data with the same ease as its authors, advancing microbiome science transparency and reproducibility. We also show how plug-ins developed by the community to add analysis capabilities can be installed and used with QIIME 2, enhancing various aspects of microbiome analyses—e.g., improving taxonomic classification accuracy. Finally, we illustrate how users can perform meta-analyses combining different datasets using readily available public data through Qiita. In this tutorial, we analyze a subset of the Early Childhood Antibiotics and the Microbiome (ECAM) study, which tracked the microbiome composition and development of 43 infants in the United States from birth to 2 years of age, identifying microbiome associations with antibiotic exposure, delivery mode, and diet. For more information about QIIME 2, see https://***. To troubleshoot or ask questions about QIIME 2 and microbiome analysis, join the active community at https://***. © 2020 The Authors. Basic Protocol: Using QIIME 2 with microbiome data. Support Protocol: Further microbiome analyses. © 2020 The Authors.

关键词： bioinformatics metagenomics microbiome QIIME 2 Qiita

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Erratum: “Stabilization of orthorhombic phase in single-crystal ZnSnN2 films” [AIP Advances 6, 075019 (2016)]

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AIP Advances 2018年第12期8卷

作者： Nancy Senabulya Nathaniel Feldberg Robert. A. Makin Yongsoo Yang Guangsha Shi Christina M. Jones Emmanouil Kioupakis James Mathis Roy Clarke Steven M. Durbin 1Applied Physics Program University of Michigan Ann Arbor Michigan 48109 USA 2Department of Physics University at Buffalo Buffalo New York 14260 USA 3Department of Electrical and Computer Engineering Western Michigan University Kalamazoo Michigan 49008-5329 USA 4Department of Physics University of Michigan Ann Arbor Michigan 48109 USA 5Department of Materials Science and Engineering University of Michigan Ann Arbor Michigan 48109 USA

Both these corrections are typographical errors that do not affect the validity of results in the original article.

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Sensing the local magnetic environment through optically active defects in a layered magnetic semiconductor

arXiv

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arXiv 2022年

作者： Klein, Julian Song, Zhigang Pingault, Benjamin Dirnberger, Florian Chi, Hang Curtis, Jonathan B. Dana, Rami Bushati, Rezlind Quan, Jiamin Dekanovsky, Lukas Sofer, Zdenek Alù, Andrea Menon, Vinod M. Moodera, Jagadeesh S. Lončar, Marko Narang, Prineha Ross, Frances M. Department of Materials Science and Engineering Massachusetts Institute of Technology CambridgeMA02139 United States John A. Paulson School of Engineering and Applied Sciences Harvard University CambridgeMA United States College of Letters and Sciences UCLA Los AngelesCA90095 United States QuTech Delft University of Technology Delft2600 GA Netherlands Department of Physics City College of New York New YorkNY10031 United States Francis Bitter Magnet Laboratory Plasma Science and Fusion Center Massachusetts Institute of Technology CambridgeMA02139 United States U.S. Army CCDC Army Research Laboratory AdelphiMD20783 United States Department of Physics The Graduate Center City University of New York New YorkNY10016 United States Department of Electrical and Computer Engineering The University of Texas at Austin AustinTX78712 United States Photonics Initiative CUNY Advanced Science Research Center New YorkNY10031 United States Department of Electrical Engineering City College of the City University of New York New YorkNY10031 United States Physics Program Graduate Center City University of New York New YorkNY10026 United States Department of Inorganic Chemistry University of Chemistry and Technology Prague Technická 5 Prague 6166 28 Czech Republic Department of Physics Massachusetts Institute of Technology CambridgeMA02139 United States

Atomic-level defects in van der Waals (vdW) materials are essential building blocks for quantum technologies and quantum sensing applications. The layered magnetic semiconductor CrSBr is an outstanding candidate for exploring optically active defects owing to a direct gap in addition to a rich magnetic phase diagram including a recently hypothesized defect-induced magnetic order at low temperature. Here, we show optically active defects in CrSBr that are probes of the local magnetic environment. We observe spectrally narrow (1 meV) defect emission in CrSBr that is correlated with both the bulk magnetic order and an additional low temperature defect-induced magnetic order. We elucidate the origin of this magnetic order in the context of local and non-local exchange coupling effects. Our work establishes vdW magnets like CrSBr as an exceptional platform to optically study defects that are correlated with the magnetic lattice. We anticipate that controlled defect creation allows for tailor-made complex magnetic textures and phases with the unique ingredient of direct optical access. Copyright © 2022, The Authors. All rights reserved.

关键词： Magnetic semiconductors

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