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International Conference on Networking, architecture, and Storage (NAS)

作者： Xiaojun Yang Tao Liu Fei Chen Hailiang Cheng National Research Center for Intelligent Computing Systems Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Academy and Sciences China Graduate University of Advanced Studies (SOKENDAI) Beijing China Key Laboratory of Computer System and Architecture Institute of Computing TechnologyNational Research Center for Intelligent Computing Systems Chinese Academy and Sciences China

MemoryIO, a sort of extended I/O in embedded systems, is presented in this paper. MemoryIO makes it powerful for embedded systems to achieve the high-performance interconnect. In view of the facts that the main memory system is absolutely necessary in any embedded system, and not all embedded systems integrate HyperTransport (HT), PCI Express or RapidIO interface, the MemoryIO based interconnect in embedded systems has more universalities compared with that based on HT, PCI Express or RapidIO. MemoryIO can not only thoroughly compensates for the lack of high performance data transfer channel, but also efficiently utilizes the memory bus bandwidth and the direct memory access (DMA) engine to reduce the latency for data transfer in embedded systems. This paper discusses some key technologies of MemoryIO, and presents its application in DCNet and the implementation of MemoryIO IP core. The MemoryIO technology can be used in various systems, but not limited to embedded systems.

关键词： Embedded system Payloads Switches Clocks Storage area networks Physical layer Protocols

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A service-oriented priority-based resource scheduling scheme for virtualized utility computing 08

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Proceedings of the 15th international conference on High performance computing

作者： Ying Song Yaqiong Li Hui Wang Yufang Zhang Binquan Feng Hongyong Zang Yuzhong Sun Key Lab. of Computer System and Architecture Inst. of Computing Techn. Chinese Academy of Sciences China and National Research Center for Intelligent Computing Systems ICT China and Graduate Univ. of Chinese Academy of Sciences China Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Academy of Sciences China and National Research Center for Intelligent Computing Systems ICT China

ISBN: (纸本)9783540898931

In order to provide high resource utilization and QoS assurance inutility computing hosting concurrently various services, this paper proposes aservice computing framework-RAINBOW for VM(Virtual Machine)-basedutility computing. In RAINBOW, we present a priority-based resourcescheduling scheme including resource flowing algorithms (RFaVM) to optimizeresource allocations amongst services. The principle of RFaVM is preferentiallyensuring performance of some critical services by degrading of others to someextent when resource competition arises. Based on our prototype, we evaluateRAINBOW and RFaVM. The experimental results show that RAINBOWwithout RFaVM provides 28%-324% improvements in service performance,and 26% higher the average CPU utilization than traditional service computingframework (TSF) in typical enterprise environment. RAINBOW with RFaVMfurther improves performance by 25%-42% for those critical services whileonly introducing up to 7% performance degradation to others, with 2%-8%more improvements in resource utilization than RAINBOW without RFaVM.

关键词： resource scheduling utility computing virtualization

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Editorial: Dependability and security

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IEEE Transactions on Dependable and Secure computing 2008年第1期5卷 1-3页

作者： Iyer, Ravishankar K. Gligor, Virgil D. Kalbarczyk, Zbigniew T. Kanoun, Karama Katzenbeisser, Stefan Mukherjee, Shubu Shieh, Shiuhpyng Zorian, Yervant Department of Electrical and Computer Engineering Carnegie Mellon University Microsoft's Trusted Computing Academic Advisory Board Center for Reliable and High-Performance Computing Coordinated Science Laboratory University of Illinois Urbana-Champaign United States IEEE IEEE Computer Society LAAS CNRS IFIP Working Group 10.4 on Dependable Computing and Fault Tolerance Special Interest Group on Dependability Benchmarking IFIP Working Group 10.4 French SEE Technical Committee on Trustworthy Computer Systems SEE Working Group Design and Validation for Dependability Technical University Munich Germany Darmstadt University of Technology ACM IACR Intel's SER Tech Council Intel's Architecture Patent Committee Taiwan Information Security Center NCTU IEEE Reliability Society Taipei and Tainan IACR United States Virage Logic Corp. AT and T Bell Laboratories Logic Vision Inc. University of British Columbia IEEE Test Technology Technical Council

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Common substructure extraction of proteins by geometric invariants

Common substructure extraction of proteins by geometric inva...

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10th International Conference on Computer-Aided Design and Computer Graphics

作者： Xu, Dong Li, Hua Gu, Tongjun Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Academy of Sciences Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Academy of Sciences National Research Center for Intelligent Computing Systems Institute of Computing Technology Chinese Academy of Sciences Center for Systems Biology Institute of Biophysics Chinese Academy of Sciences Graduate University Chinese Academy of Sciences

ISBN: (纸本)9781424415786

Structure alignment could help to find shape similarities between proteins and guide structure classification and fold recognition. Common substructure detection and extraction are especially important, for which could guide the biologist to discover binding site or active site. We represent each segment of alpha-carbon backbone by using dihedral angles and curve moment invariants. Then, local and global structure alignment could be performed by iterative closest point algorithm. Maximum common substructures between a pair of proteins or within a protein could be found. Active sites also could be detected by the proposed algorithm.

关键词： Proteins

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3-D projective moment invariants

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Journal of Information and Computational Science 2007年第2期4卷 821-828页

作者： Xu, Dong Li, Hua Key Laboratory of Intelligent Information Processing Institute of Computing Technology Chinese Acad. of Sci. Beijing 100080 China Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Acad. of Sci. Beijing 100080 China National Research Center for Intelligent Computing Systems Institute of Computing Technology Chinese Acad. of Sci. Beijing 100080 China Graduate University Chinese Acad. of Sci. Beijing 100080 China

2-D projective moment invariants were firstly proposed by Suk and Flusser in [12]. We point out here that there is a useless projective moment invariant which is equivalent to zero in their paper. 3-D projective moment invariants are generated theoretically by investigating the property of signed volume of a tetrahedron. The main part is the selection of permutation invariant cores for multiple integrals to generate independent and nonzero 3-D projective moment invariants. We give the conclusion that projective moment invariants don't exist strictly speaking because of their convergence problem.

关键词： Computer vision

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Protein structure superposition by curve moment invariants and iterative closest point

Protein structure superposition by curve moment invariants a...

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2007 1st International Conference on Bioinformatics and Biomedical Engineering, ICBBE

作者： Xu, Dong Li, Hua Gu, Tongjun Key Laboratory of Intelligent Information Processing Key Laboratory of Computer System and Architecture National Research Center for Intelligent Computing Systems Institute of Computing Technology Chinese Academy of Sciences Center for Systems Biology Institute of Biophysics Chinese Academy of Sciences Graduate University Chinese Academy of Sciences

ISBN: (纸本)1424411203

Superimpose one protein tertiary structure to another can help to find similarity between them and further identify functional and evolutionary relationships. We first extract invariant features under rigid body transformation for each protein backbone which is represented by alpha-carbons of all the residues. Then, the invariant features are embedded with Iterative Closest Point algorithm for superposition. With several initialized orientations, pairwise alignment can be achieved accurately only by few iterations. Experiments indicate that our proposed algorithm is competitive with several well-known algorithms and with smallest root mean squared distance. © 2007 IEEE.

关键词： Proteins

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cco-exist with other services on a VM-based virtualized computing platform?

cco-exist with other services on a VM-based virtualized comp...

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2007 Asian technology Information Program's (ATIP's) 3rd Workshop on High Performance computing in China - Solution Approaches to Impediments for High Performance computing, CHINA HPC'07

作者： Song, Ying Wang, Hui Li, Yaqiong Sun, Yuzhong Zeng, Yu Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Academy of Sciences Beijing 100080 China National Research Center for Intelligent Computing Systems ICT Beijing 100080 China Graduate University of Chinese Academy of Sciences Beijing 100049 China

ISBN: (纸本)9781595939036

Trend towards providing heterogeneous services concurrently by ISPs and low utilization of servers make it necessary to consolidate various services computing into a single platform. In such a shared environment, meeting application-level QoS goals and avoiding interaction among services become challenges as each application consumes different amount of resource and requires different QoS. Video-on-demand (VoD) has been identified as an important application among multimedia services. In this paper, we study a case of interaction among services concurrently running on a virtualized computing environment. The contributions of this paper are follows. 1) We design a novel capability service computing framework for service computing consolidation (CSCF) to study the interaction among concurrent services in a VM-Based Virtualized computing Environment;2) A dynamic and lazy memory flowing algorithm (DLMFaVM) among VMs is proposed to partially fulfill this computing model by resource flowing;3) We also develop a virtualized computing platform to study the possibility of service computing consolidation;4) We analyze the interaction among VoD service and other typical enterprise services in our capability service computing environment and draw a conclusion that the VoD streaming service co-existing with other services on a VM-based virtualized computing platform is a trend for ISPs. But it presents some challenges for the designers of service soft and the designers of service computing platform. Copyright 2007 ACM.

关键词： Video on demand

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Obtaining ship trajectories of an autonomous in-scale fast-ferry by identifying a heading model

Obtaining ship trajectories of an autonomous in-scale fast-f...

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IEEE International Symposium on Intelligent Signal Processing

作者： Velasco, F. J. Revestido, E. Lopez, E. Moyano, E. Dept. Electronics Technology and Systems Engineering and Automatic Control Univ. Cantabria Dept. Sciences and Navigation Technics Engines and Naval Architecture Univ. País Vasco (UPV/EHU) Dept. Applied Mathematics and Computing Sciences Univ. Cantabria

ISBN: (纸本)9781424408290

The aim of this paper is to obtain a model for an in-scale fast-ferry model TF-120 including the dynamics and kinematics, using a remote experimentation platform for marine vehicles. The physical model is autonomous and is controlled remotely from a PC using Wi-Fi communications. The identification and validation of the dynamical model is obtained with turning circle maneuverings. In this model are included the kinematical equations. The tests with the autonomous in-scale physical model of the high-speed ship were carried out in the surroundings of the Bay of Santander. With this model. simulations with several turbojets angles are made.

关键词： parametric identification ship physical model manoeuvring heading idemification

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Design of NIC Based on I/O Processor for Cluster Interconnect Network

Design of NIC Based on I/O Processor for Cluster Interconnec...

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International Conference on Networking, architecture, and Storage (NAS)

作者： Xiaojun Yang Dongdong Wu Ninghui Sun National Research Center for Intelligent Computing Systems Key Laboratory of Computer System and Architecture Institute of Computing Technology Chinese Academy and Sciences Beijing China

An effective interconnect network interface card (NIC) is critical to the achievement of a high-performance cluster system. An original NIC architecture based on the Intel IOP310 I/O processor chipset is presented in this paper. The NIC is a part of DCNet, which is the cluster interconnect network developed by NCIC. The I/O processor makes it powerful for the NIC to offload the processing of communication protocol from the host CPU. In the NIC architecture, the memory bus is extended to be a local bus for system peripheral interconnection, and a memory integrated network interface (MINI) is implemented and embedded. The testing results of DCNet show that the NIC obtains reasonable user-level communication performance, and prove that the NIC architecture, which based on I/O processor and the MINI approach, is feasible and effective to achieve the high performance.

关键词： Computer architecture Computer networks Network interfaces Supercomputers Bandwidth Intelligent systems Intelligent networks Computer interfaces Power system interconnection Protocols

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Improved adaptive buffer replacement algorithm used for second level buffer

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Jisuanji Yanjiu yu Fazhan/Computer Research and Development 2007年第8期44卷 1331-1338页

作者： Sun, Guozhong Yuan, Qingbo Chen, Mingyu Fan, Jianping National Research Center for Intelligent Computing Systems Institute of Computing Technology Chinese Acad. of Sci. Beijing 100080 China Graduate University Chinese Acad. of Sci. Beijing 100049 China Key Laboratory of Computer System and Architecture Chinese Acad. of Sci. Beijing 100080 China Institute of Computing Technology Chinese Acad. of Sci. Beijing 100080 China

In a cluster or a database server system, the performance of some data intensive applications will be degraded much because of the limited local memory and large amount of interactions with slow disk. In high speed network, utilizing remote memory of other nodes or customized memory server to be as second level buffer can decrease access numbers to disks and benefit application performance. With second level buffer mode, this paper made some improvements for a recently proposed buffer cache replacement algorithm-LIRS, and brings forward an adaptive algorithm-LIRS-A. LIRS-A can adaptively adjust itself according to application characteristic, thus the problem of not suiting for time locality of LIRS is avoided. In TPC-H benchmarks, LIRS-A could improve hit rate over LIRS by 7.2% at most. In a Groupby query with network stream analyzing database, LIRS-A could improve hit rate over LIRS by 31.2% at most. When compared with other algorithms, LIRS-A also show similar or better performance.

关键词： Buffer storage

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