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Fast and Effective Clustering Method for Ancestry Estimation

Procedia computer science 2019年 157卷 306-312页

作者： Arif Budiarto Bharuno Mahesworo James Baurley Teddy Suparyanto Bens Pardamean Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 BioRealm LLC USA Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta 11480 Indonesia

Ancestry estimation which provides family history information is one of the most popular services in direct-to-consumer genomic testing. It is also an important task which aimed to reduce the confounding by ancestry on the relationship of genotypes and disease risk in assocation studies. Several methods have been developed to generate the best ancestry estimated scores even though some of them are still facing inefficient computation time. In this paper, a combination method between KMeans clustering and PCA is proposed estimate ancestry estimation from SNP genotyping data. This method was compared with baseline model, called fastSTRUCTURE, in term of the quality of clustering and computation time. Public data from 1000 Genome project is used to train and evaluate the proposed model and the baseline model. The proposed model can successfully generate clusters with better accuracy than fastSTRUCTURE (91.02% over 90.39%). More importantly, it can boost the computation time until 100 times faster than fastSTRUCTURE (from 490 seconds to 4.86 seconds).

关键词： Ancestry Estimation Population Stratification Clustering Bioinformatics Genomics

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An integrated system of mobile application and IoT solution for pond monitoring

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IOP Conference Series: Earth and Environmental science 2021年第1期794卷

作者： Ferdinan Darmalim Alam Ahmad Hidayat Tjeng Wawan Cenggoro Kartika Purwandari Sutristo Darmalim Bens Pardamean NusaNet Jakarta Indonesia 12710 Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

The current progress of information and communication technology has been critical to the development of the Internet of Things (IoT) in a aquaculture system. IoT solution in this system utilizes interconnectivity between devices to obtain fish pond monitoring data from sensing devices and then transmit the data to a remote server to be analyzed for decision-making in pond management. In this paper, we propose a smart pond IoT solution that provides a continuous and real-time pond monitoring. The system principally embeds five sensors that measure critical environmental parameters to determine water quality: temperature, pH, dissolved oxygen (DO), total dissolved solids (TDS), and salinity. The IoT solution also integrates the development of a mobile application on the android platform that allows remote monitoring capabilities for users to maintain efficient pond management. The application is designed with a friendly-user interface that helps the farmer to monitor sensor measurements, manage fish production cycle, record fish feeding schedule, and also monitor the health status of fish from multiple ponds.

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Comparing the Accuracy of Multiple Commercial Wearable Devices: A Method

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Procedia computer science 2019年 157卷 567-572页

作者： Bens Pardamean Haryono Soeparno Bharuno Mahesworo Arif Budiarto James Baurley Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 BioRealm LLC USA

To maintain a good fitness level, performing a minimum daily physical activity is important. Many people think that they have already met the suggested guidelines. However, most of them were wrong when they quantify their activity level using a personal activity tracker device. This problem indicates the need for personal physical activity tracker or wearable device to maintain the fitness level. However, as wide-range wearable devices available today, it is difficult to find the most suitable one regarding the price and quality. This paper proposes a study to explore the association between the quality and the price of the devices. The quality is evaluated by comparing the accuracy of the heart rate sensor and step counter of several wearable devices with the ground truth measurements. The test result is then analyzed using a series of statistical methods including, a paired t-test, Pearson’s correlation test, and Bland-Altman plot. Both t-test and correlation coefficient is used to plot the association between quality and price.

关键词： Wearable Device Fitness Tracker Correlation Heart Rate Step Counting Bland-Altman

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Fuzzy ecoDSS Development for Road Traffic Engineering 3

Fuzzy ecoDSS Development for Road Traffic Engineering

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3rd International Conference on Information Management and Technology, ICIMTech 2018

作者： Nurlatifani, Sofie Retnowardhani, Astari Utama, Ditdit Nugeraha UIN Syarif Hidayatullah Information System Jakarta Indonesia Information Systems Management Department Bina Nusantara University BINUS Graduate Program - Master of Information Systems Management Jakarta11480 Indonesia Computer Science Department Bina Nusantara University BINUS Graduate Program - Master of Computer Science Jakarta11480 Indonesia

ISBN: (纸本)9781538658215

A road traffic engineering (RTE) is realistically required to reduce the road traffic congestion (RTC) degree. The congestion negatively affects not only to economy and physiology factors, but also for human environment and health. This paper methodologically represents the development of ecological decision support system based on the concept of fuzzy logic (Fuzzy ecoDSS) for RTE. Three types of core method operated here;fuzzy logic, water flow algorithm (WFA), and object oriented. The method fuzzy logic used to avoid the fuzziness in parameterizing and prioritize the parameters. The WFA approach functioned to replicate the flow of road traffic and optimize it thru RTE. Finally, the method object oriented benefited to analyze and design the constructed system. Thus, the simulation result exhibits the best decision alternative taken gives better air condition (more 200% than normal condition) and better road traffic velocity (more 2,200% than normal situation). © 2018 IEEE.

关键词： Decision support systems

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Data Engineering Pipeline to Analyse Jakarta's Air Quality during COVID-19-Caused Lockdown Periods

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IOP Conference Series: Earth and Environmental science 2021年第1期794卷

作者： Reza Rahutomo Bens Pardamean Information System Department School of Information Systems Bina Nusantara University Jakarta Indonesia 11480 Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

Jakarta lifted up lockdown after passing more than 50 days of large-scale social activity restriction and initiated phase opening to new normal. To analyse Jakarta's air quality after passing lockdown, a pipeline of data engineering is needed. By acquiring time series data from ***, a time-series database system is developed with Python programming language and its fundamental libraries namely Pandas, NumPy, SQLite. After PM 2.5 data are pre-processed into average per-hour and grouped by applicable periods (pre-lockdown, lockdown, and phase opening), a pattern of PM 2.5 in South Jakarta is revealed by using data visualization library Matplotlib. The apex of PM 2.5 occurs earlier during lockdown (04:00) and phase opening (02:00) rather than when it was normal or pre-lockdown (08:00) even though the nadir of PM2.5 still occurs at the same time (16:00 – 17:00).

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Review Study of Business Intelligence to Support Strategic Decision Making

Review Study of Business Intelligence to Support Strategic D...

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International Conference on Electrical Engineering and Informatics, ICEEI

作者： Astari Retnowardhani Wahyu Sardjono Yaya Sudarya Triana BINUS Graduate Program Master of Information Systems Management Bina Nusantara University Jakarta Indonesia Faculty of Computer Science Universitas Mercu Buana Jakarta Indonesia

In this era the business competition between regions and countries will be more stringent. One way to survive and improve its performance is through the management of information, it is necessary to be able to see and assess the company from a variety of perspectives. One of the keys to surviving and playing a role is to manage complete, fast and precise information. Data analysis will be easy if the required data is available. Business intelligence techniques (BI) can be used to assist in the decision-making process. Many organization and educational institution have implemented BI as the support system. Therefore, we make a comparison study about BI research finding from several articles. From the comparison study it can be seen the research in the BI field is continues to grow and also following the technology trend. This can be seen from the topics discussed in the journal articles in the period 2010-2017. This study is conducted to see the spread and trend of business intelligence research in various forms of organization. Also can be seen the advantages of BI in the decision-making process.

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A Vehicle Forensics framework with Post-Quantum Cryptography and Blockchain

A Vehicle Forensics framework with Post-Quantum Cryptography...

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IEEE International Symposium on Intelligent Signal Processing and Communication Systems (ISPACS)

作者： Chien-Lung Hsu Yi-Cheih Hsu Yu-Jen Shih Cheng-Wei Wu Fu-Hau Hsu Graduate Institute of Management Chang Gung University Taiwan Taoyuan R.O.C Department of Information Management Chang Gung University Taiwan Taoyuan R.O.C Healthy Aging Research Center Chang Gung University Taiwan Taoyuan R.O.C Department of Visual Communication Design Ming-Chi University of Technology Taiwan Taoyuan R.O.C Chang-Gung Memorial Hospital Taiwan Taoyuan R.O.C Department of Master of Science Degree Program in Innovation for Smart Medicine Chang Gung University Taiwan Taoyuan R.O.C Computer Science& Information Engineering National Central University Taiwan Taoyuan R.O.C Information Management Chang Gung University Taiwan Taoyuan R.O.C

ISBN: (数字)9798350389210

ISBN: (纸本)9798350389227

With the recent rapid development of the Internet of Vehicles and autonomous driving technology, the demand for digital vehicle identification has also increased. Coupled with the gradual maturity of quantum technology, the Internet of Vehicles, which mainly uses wireless communication technology for data transmission, will face the threat of quantum computing and privacy issues. This research proposes the Vehicle Forensics Cloud System (VFCS), a framework combining post-quantum cryptography and blockchain technology to address these issues and provide a comprehensive solution for vehicle digital forensics.

关键词： Wireless communication Quantum computing Digital forensics Insurance Signal processing Blockchains Safety Autonomous vehicles Interoperability Internet of Vehicles

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Systematic literature review on physical distancing policy for mass gathering events

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AIP Conference Proceedings 2022年第1期2472卷

作者： Asmahany Ramely Mohd Kamal Mohd Nawawi Ruzelan Khalid Antoni Wibowo Amalia Zahra 1School of Tourism Hospitality and Event Management Universiti Utara Malaysia 06010 UUM Sintok Kedah Malaysia 2Institute of Strategic Industrial Decision Modeling School of Quantitative Sciences Universiti Utara Malaysia 06010 UUM Sintok Kedah Malaysia 3Computer Science Department Binus Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

The explosive spread of Corona Virus Disease-19 (COVID-19) in late December 2019, requires the health authorities worldwide to enforced stricter standard operating procedures (SOP) for mass gathering events, which eventually caused postponement and cancellation. This has led to a great loss and bankruptcy for most event organizers. As an effort to offer solution to this matter, a professional touch producing “soft landing” such as “Mathematical Modelling of Physical Distancing Policy for Mass Gathering Event Organizer” was proposed. Therefore, a holistic understanding about the issues related to physical distancing in mass gathering event is required. This systematic review paper summarizes current practice of physical distancing among mass gathering event organizers. This study reviewed thirteen articles using two leading databases namely Scopus and Google Scholar. Based on thematic analysis, this review finalized four themes: 1) physical distancing method; 2) the importance of physical distancing; 3) challenges in physical distancing enforcement and 4) approach to monitor the compliance of physical distancing.

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A therapy game for elementary students with ADHD

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AIP Conference Proceedings 2023年第1期2508卷

作者： Raymond Bahana Edi Abdurachman Ford L. Gaol Tjhin Wiguna Fonny Dameaty Hutagalung Bayu Prakoso Dirgantoro Eko Nugroho 1Computer Science Department BINUS Graduate Program Doctor of Computer Science Bina Nusantara University Jakarta Indonesia 2Faculty of Medicine Universitas Indonesia Depok Indonesia 3Department of Educational Psychology and Counselling Faculty of Education University of Malaya Kuala Lumpur Malaysia 4Graphic Design and New Media Prog. Visual Communication Design Dept. BINUS Northumbria School of Design Bina Nusantara University Jakarta Indonesia 5Kummara Bandung Indonesia

Children with Attention Deficit Hyperactivity Disorder usually have problem to express themselves. Using game as a therapy, they could reduce the problem. A recent study has revealed video games might be an alternative therapy for children with ADHD. This research is to analyze the data that was collected from a prototype game that has been developed and created. The game is created using Construct2. To collect data from the game, back-end web application was created using PHP and MySQL. Several data that have been used in this research paper are score, incorrect house, and incorrect fruit. Ten children with ADHD are involved in this testing, all children are elementary students and never receive any treatment for their ADHD. Before and after the testing, they have been tested by fMRI. The testing consists of 4 weeks of training sessions of about 20-30 minutes almost every day except Sunday or public holiday. Every session contains at least three tutorial or training tasks and four game tasks in a fixed order. In conclusion, the result showed the scores were better when the children with ADHD play with visual instruction rather than with audio instruction.

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Weeds e-Catalog as a Tool for Identification of Weeds in Plantation

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IOP Conference Series: Earth and Environmental science 2021年第1期794卷

作者： Hangger Gahara Mawandha Teddy Suparyanto Bens Pardamean Agrotechnology Department Institute of Agriculture STIPER Yogyakarta Indonesia 55281 Agricultural Engineering Department Institute of Agriculture STIPER Yogyakarta Indonesia 55281 Bioinformatics and Data Science Research Center Universitas Bina Nusantara Jakarta Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University Jakarta

Weeds are one of the organisms that interfere with plant growth. Information about the identity of weeds becomes very important on plantations. Although weeds data digitization has been done a lot, currently there is still not much weeds data information system can be accessed online. Weeds management is often dealt with weeds herbarium or weeds photographs. In an effort to provide a good information system for farmers, this research aims to create a database of various types of weeds and an information system that can be accessed online. The methodology for developing a weed catalog information system uses the Software Development Life Cycle (SDLC). Weed samples in database were collected through systematic random sampling in the form of images and text. The result of this study is a Weeds Electronic Catalog or Weeds e-Catalog that can facilitate the information of weeds identity such as names, classifications, morphology, life cycles, and habitats of various types of weeds that grow on plantation land. Weeds e-Catalog can be used by plantation practitioners and farmers to make decisions in controlling weeds.

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