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Finding the transcription factor binding locations using novel algorithm segmentation to filtration (S2F)

Journal of Ambient intelligence and Humanized Computing 2024年第9期15卷 3347-3358页

作者： Theepalakshmi, P. Srinivasulu Reddy, U. Department of Computer Science and Engineering Gandhi Institute of Technology and Management Karnataka Bengaluru India Machine Learning and Data Analytics Lab Center of Excellence in Artificial Intelligence Department of Computer Applications National Institute of Technology Tamilnadu Tiruchirappalli India

The primary aim of identifying the binding motifs in gene regulation is to understand the transcriptional regulation molecular mechanism systematically. In this study, the (, d) motif search issue was considered which entails finding the length motifs which differ by at most d substitutions. However, identifying the high-quality pattern (, d) is challenging. It is intended to address the above problem with motif discovery and handle it using the proposed algorithm S2F (Segmentation to Filtration) based on the qPMS (quorum Planted Motif Search) algorithm model. From the entire DNA sequences, five percent are chosen at random to be used in the motif discovery process. This random sub segment (subseg) portion is split up into base, sub k-mers, and its sizes (motif length ()) are determined by the iterative approach. Corresponding to the sizes of and d (mutations), the k-mers are chosen which participated in filtration techniques and the base k-mer count and frequency are updated. The highest frequency of k-mer is recognized as the motif. The algorithm’s performance was evaluated using the two real datasets Escherichia coli cyclic AMP receptor protein (CRP) and mouse Embryonic Stem Cell (mESC) ChIP-seq (Chromatin Immuno Precipitation) dataset. Results from the experiments show that S2F can identify the motifs and appear faster compared to previous state-of-the-art PMS (Planted Motif Search) and qPMS algorithms. Graphical Abstract: (Figure presented.) © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024.

关键词： DNA sequences

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TezNet: An Efficient Convolutional Neural Network for Optical Coherence Tomography Classification 6

TezNet: An Efficient Convolutional Neural Network for Optica...

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6th International Conference on Robotics and Automation in Industry, ICRAI 2024

作者： Qaiser, Muhid Abbas, Muhammad Sohail Muhammad, Asif Haider, Khadija Khan, Haroon National University of Computer and Emerging Sciences Department of Artificial Intelligence and Data Science Islamabad Pakistan National University of Computer and Emerging Sciences Department of Software Engineering Islamabad Pakistan

ISBN: (纸本)9798350355703

Retinal diseases such as Choroidal Neovascularization (CNV), Drusen, and Diabetic Macular Edema (DME) can severely impair vision and are challenging to reverse if detected late. Optical Coherence Tomography (OCT) serves as a non-invasive imaging modality to diagnose these conditions through cross-sectional retinal images. Current advancements in retinal disease detection predominantly focus on fine-tuning larger models to achieve high accuracy, often at the expense of substantial training time and data requirements. We introduce an innovative Convolutional Neural Network (CNN) named TezNet that is deeper and wider than existing custom CNNs for the dataset used in this research yet maintains a lightweight architecture with only 3.6 million parameters. This high efficiency is accomplished by leveraging depthwise and spatial separable convolutional techniques without employing preprocessing techniques or noise reduction filters. The data augmentation techniques generate diverse image qualities, ensuring robust predictions across various scenarios. By training exclusively on a single dataset, our model achieves rapid training times and optimal resource utilization, minimizing the risk of overfitting. This blend of advanced parameter optimization, minimal preprocessing, and strategic data augmentation underscores the potential of our CNN model for swift, precise, and resource-efficient retinal disease detection. TezNet model achieves a remarkable 96% accuracy, competing closely with state-of-the-art networks like ResNet50 (over 23M parameters), InceptionV3 (over 25M parameters), and ResNeXt (89M parameters). © 2024 IEEE.

关键词： Optical coherence tomography

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FL-GNN: Efficient Fusion of Fuzzy Neural Network and Graph Neural Network 27

FL-GNN: Efficient Fusion of Fuzzy Neural Network and Graph N...

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27th European Conference on Artificial intelligence, ECAI 2024

作者： Du, Boyu Zhou, Jingya Liu, Ling She, Xiaolong School of Computer Science and Technology Soochow University China Engineering Lab.of Big Data and Intelligence of Jiangsu Province Soochow University China State Key Lab.for Novel Software Technology Nanjing University China School of Computer Science Georgia Institute of Technology United States

ISBN: (纸本)9781643685489

Graph Neural Networks (GNNs) have become an important graph feature learning paradigm that is extensively applied to graph inference ***, GNNs still have limitations in some aspects such as representation capability, interpretability, *** this end, this paper introduces a novel hybrid Fuzzy-Logic Graph Neural Network (FL-GNN) that synergistically combines Fuzzy Neural Network (FNN) and GNN to effectively capture and aggregate local information flows within the ***-GNN exhibits three distinctive ***, we incorporate a specialized structure fuzzy rule to enhance FL-GNN's graph inference capability, surpassing representative GNN ***, we augment the interpretability of FL-GNN by integrating analytical exploration methods from two perspectives: Fuzzy Inference System and Message Passing Algorithm (MPA).Lastly, we refine the structure of FL-GNN based on MPA to optimize its calculation complexity and consequently improve learning *** results show that FL-GNN outperforms existing representative graph neural networks for graph inference tasks. © 2024 The Authors.

关键词： Graph neural networks

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HUSS:A Heuristic Method for Understanding the Semantic Structure of Spreadsheets

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data intelligence 2023年第3期5卷 537-559页

作者： Xindong Wu Hao Chen Chenyang Bu Shengwei Ji Zan Zhang Victor S.Sheng Key Laboratory of Knowledge Engineering with Big Data(the Ministry of Education of China) Hefei University of TechnologyChinaSchool of Computer Science and Information EngineeringHefei University of TechnologyHefeiChina Research Institute of Artificial Intelligence Zhejiang LabHangzhouChina Department of Computer Science Texas Tech UniversityLubbockTX 79409USA

Spreadsheets contain a lot of valuable data and have many practical *** key technology of these practical applications is how to make machines understand the semantic structure of spreadsheets,e.g.,identifying cell function types and discovering relationships between cell *** existing methods for understanding the semantic structure of spreadsheets do not make use of the semantic information of cells.A few studies do,but they ignore the layout structure information of spreadsheets,which affects the performance of cell function classification and the discovery of different relationship types of cell *** this paper,we propose a Heuristic algorithm for Understanding the Semantic Structure of spreadsheets(HUSS).Specifically,for improving the cell function classification,we propose an error correction mechanism(ECM)based on an existing cell function classification model[11]and the layout features of *** improving the table structure analysis,we propose five types of heuristic rules to extract four different types of cell pairs,based on the cell style and spatial location *** experimental results on five real-world datasets demonstrate that HUSS can effectively understand the semantic structure of spreadsheets and outperforms corresponding baselines.

关键词： Spreadsheet semantic structure Information extraction Heuristics Cell function analysis Table structure analysis

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Imitation Learning from Purified Demonstrations 41

Imitation Learning from Purified Demonstrations

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41st International Conference on Machine Learning, ICML 2024

作者： Wang, Yunke Dong, Minjing Zhao, Yukun Du, Bo Xu, Chang School of Computer Science National Engineering Research Center for Multimedia Software Institute of Artificial Intelligence Wuhan Institute of Data Intelligence Wuhan University China Department of Computer Science City University of Hong Kong Hong Kong School of Computer Science Faculty of Engineering The University of Sydney Australia

Imitation learning has emerged as a promising approach for addressing sequential decision-making problems, with the assumption that expert demonstrations are optimal. However, in real-world scenarios, most demonstrations are often imperfect, leading to challenges in the effectiveness of imitation learning. While existing research has focused on optimizing with imperfect demonstrations, the training typically requires a certain proportion of optimal demonstrations to guarantee performance. To tackle these problems, we propose to purify the potential noises in imperfect demonstrations first, and subsequently conduct imitation learning from these purified demonstrations. Motivated by the success of diffusion model, we introduce a two-step purification via diffusion process. In the first step, we apply a forward diffusion process to smooth potential noises in imperfect demonstrations by introducing additional noise. Subsequently, a reverse generative process is utilized to recover the optimal demonstration from the diffused ones. We provide theoretical evidence supporting our approach, demonstrating that the distance between the purified and optimal demonstration can be bounded. Empirical results on MuJoCo and RoboSuite demonstrate the effectiveness of our method from different aspects. Copyright 2024 by the author(s)

关键词： Contrastive Learning

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Automatic extraction of lightweight and efficient neural network architecture of heavy convolutional architectures to predict microsatellite instability from hematoxylin and eosin histology in gastric cancer

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Neural Computing and Applications 2024年第25期36卷 15295-15321页

作者： Rostami, Habib Ashkpour, Maryam Behzadi-Khormouji, Hamed Mokhtari, Maral Khayati, Armin Keshavarz, Ahmad Talatian Azad, Saeed Tabesh, Yahya Computer Engineering Department Faculty of Intelligent Systems Engineering and Data Science Persian Gulf University Bushehr75168 Iran Artificial Intelligence and Intelligent Healthcare Lab Artificial Intelligence and Data Mining Research Group Faculty of Intelligent Systems Engineering and Data Science ICT Research Institute Persian Gulf University Bushehr75168 Iran Faculty of New Science and Technologies University of Tehran Tehran Iran Department of Computer Science Imec-IDLab University of Antwerp Sint-Pietersvliet 7 Antwerp2000 Belgium Shahid Faghihi Hospital Shiraz University of Medical Sciences Shiraz Iran Department of Computer Science Engineering and IT School of Electrical and Computer Engineering Shiraz University Shiraz Iran Electrical Engineering Department Faculty of Intelligent Systems Engineering and Data Science Persian Gulf University Bushehr75168 Iran IoT and Signal Processing Research Group Faculty of Intelligent Systems Engineering and Data Science ICT Research Institute Persian Gulf University Bushehr75168 Iran Department of Mathematical Sciences Sharif University of Technology Tehran Iran

Cancers have emerged as a significant concern due to their impact on public health and society. The examination and interpretation of tissue sections stained with Hematoxylin and Eosin (H&E) play a crucial role in disease assessment, particularly in cases like gastric cancer. Microsatellite instability (MSI) is suggested to contribute to the carcinogenesis of specific gastrointestinal tumors. However, due to the nonspecific morphology observed in H&E-stained tissue sections, MSI determination often requires costly evaluations through various molecular studies and immunohistochemistry methods in specialized molecular pathology laboratories. Despite the high cost, international guidelines recommend MSI testing for gastrointestinal cancers. Thus, there is a pressing need for a new diagnostic modality with lower costs and widespread applicability for MSI detection. This study aims to detect MSI directly from H&E histology slides in gastric cancer, providing a cost-effective alternative. The performance of well-known deep convolutional neural networks (DCNNs) and a proposed architecture are compared. Medical image datasets are typically smaller than benchmark datasets like ImageNet, necessitating the use of off-the-shelf DCNN architectures developed for large datasets through techniques such as transfer learning. Designing an architecture proportional to a custom dataset can be tedious and may not yield desirable results. In this work, we propose an automatic method to extract a lightweight and efficient architecture from a given heavy architecture (e.g., well-known off-the-shelf DCNNs) proportional to a specific dataset. To predict MSI instability, we extracted the MicroNet architecture from the Xception network using the proposed method and compared its performance with other well-known architectures. The models were trained using tiles extracted from whole-slide images, and two evaluation strategies, tile-based and whole-slide image (WSI)-based, were employed and comp

关键词： Network architecture

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Predicting Pre-Owned Bike Values with Machine Learning Techniques in Bangladesh 2

Predicting Pre-Owned Bike Values with Machine Learning Techn...

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2nd IEEE International Conference on data science and Network Security, ICDSNS 2024

作者： Ferdous, Kazi Hassanul Arman, Md.Shohel Ahmed, Kazi Rifat Tasnim, Nusrat Mahmud, Imran Revathi, P. Daffodil International University Diu Data Science Lab Department of Software Engineering Dhaka Bangladesh Holy Cross College Department of Computer Science Tamilnadu Tiruchirapalli India

ISBN: (纸本)9798350373110

As the importance of sustainable practices in the automobile sector grows, it's critical to anticipate motorcycle prices and offerings. With so many variables to consider when buying a secondhand motorcycle-condition, mileage, brand reputation, model characteristics, etc.-accurate pricing prediction is essential for both customers looking for good values and sellers hoping to maximize profits. This study investigates the effectiveness of four machine learning techniques Decision Tree models, Support Vector Regression (SVR), K-Nearest Neighbors (KNN), and Stochastic Gradient Descent (SGD) Regressions-in predicting motorcycle prices using a dataset obtained from motorcycle merchants. It's noteworthy that these methods are used with a hybrid architecture to improve prediction accuracy. Different approaches are compared and contrasted to find the best fit for the given dataset, and the difficulties and roadblocks that come with them are also discussed. After extensive testing, the decision tree model's effectiveness is shown with an amazing 97% accuracy rate, providing accurate price estimates that are essential for encouraging sustainable habits in the ever-changing Internet of Things environment. With an impressive accuracy rate, this methodology provides precise pricing estimations, which are critical for supporting sustainable practices in the automotive industry. © 2024 IEEE.

关键词： Motorcycles

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Real-World Wireless Network Modeling and Optimization:From Model/data-Driven Perspective

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Chinese Journal of Electronics 2022年第6期31卷 991-1012页

作者： LI Yang ZHANG Shutao REN Xiaohui ZHU Jianhang HUANG Jiajie HE Pengcheng SHEN Kaiming YAO Zhiqiang GONG Jie CHANG Tsunghui SHI Qingjiang LUO Zhiquan Shenzhen Research Institute of Big Data Pengcheng Lab School of Science and Engineering The Chinese University of Hong Kong (Shenzhen) College of Mathematics and Computational Sciences Xiangtan University School of Computer Science and Engineering Sun Yat-Sen University School of Software Engineering Tongji University

With the rapid development of the fifth-generation wireless communication systems, a profound revolution in terms of transmission capacity, energy efficiency, reliability, latency, and connectivity is highly expected to support a new batch of industries and applications. To achieve this goal, wireless networks are becoming extremely dynamic, heterogeneous, and complex. The modeling and optimization for the performance of realworld wireless networks are extremely challenging due to the difficulty to predict the network performance as a function of network parameters, and the prohibitively huge number of parameters to optimize. The conventional network modeling and optimization approaches rely on drive test, trial-and-error, and engineering experience,which are labor intensive, error-prone, and far from optimal. On the other hand, while the research community has spent significant efforts in understanding the fundamental limits of radio channels and developing physical layer techniques to operate close to it, very little is known about the performance limits of wireless networks, where millions of radio channels interact with one another in complex manners. This paper reviews the very recent mathematical and learning based techniques for modeling and optimizing the performance of real-world wireless networks in five aspects, including channel modeling, user demand and traffic modeling, throughput modeling and prediction, network parameter optimization, and IRS empowered performance optimization, and also presents the corresponding notable performance gains.

关键词： network parameter optimization telecommunication computing optimisation mathematical techniques wireless channels performance optimization learning based techniques telecommunication traffic mathematical analysis physical layer techniques channel modeling wireless network modeling fifth generation wireless communication systems learning (artificial intelligence) model-data-driven perspective IRS empowered performance optimization radio channels traffic modeling radio networks

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TMRE:Novel Algorithm for Computing Daily Reference Evapotranspiration Using Transformer-Based Models

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computers, Materials & Continua 2025年第5期83卷 2851-2864页

作者： Bushra Tayyaba Muhammad Usman Ghani Khan Talha Waheed Shaha Al-Otaibi Tanzila Saba National Center of Artificial Intelligence(NCAI) Al Khwarizmi Institute of Computer Sciences(KICS)Lahore54890Pakistan Department of Computer Science University of Engineering and Technology LahoreLahore54890Pakistan Artificial Intelligence&Data Analytics Lab Prince Sultan UniversityRiyadh11586Saudi Arabia Department of Information Systems College of Computer and Information SciencesPrincess Nourah bint Abdulrahman UniversityRiyadh11671Saudi Arabia

Reference Evapotranspiration(ETo)iswidely used to assess totalwater loss between land and atmosphere due to its importance in maintaining the atmospheric water balance,especially in agricultural and environmental *** estimation of ETo is challenging due to its dependency onmultiple climatic variables,including temperature,humidity,and solar radiation,making it a complexmultivariate time-series *** machine learning and deep learning models have been applied to forecast ETo,achieving moderate ***,the introduction of transformer-based architectures in time-series forecasting has opened new possibilities formore precise ETo *** this study,a novel algorithm for ETo forecasting is proposed,focusing on four transformer-based models:Vanilla Transformer,Informer,Autoformer,and FEDformer(Frequency Enhanced Decomposed Transformer),applied to an ETo dataset from the Andalusian *** novelty of the proposed algorithm lies in determining optimized window sizes based on seasonal trends and variations,which were then used with each model to enhance prediction *** custom window-sizing method allows the models to capture ETo’s unique seasonal patterns more ***,results demonstrate that the Informer model outperformed other transformer-based models,achievingmean square error(MSE)values of 0.1404 and 0.1445 for forecast windows(15,7)and(30,15),*** Vanilla Transformer also showed strong performance,closely following the *** findings suggest that the proposed optimized window-sizing approach,combined with transformer-based architectures,is highly effective for ETo *** novel strategy has the potential to be adapted in othermultivariate time-series forecasting tasks that require seasonality-sensitive approaches.

关键词： Reference evapotranspiration ETo transformer informer autoformer FEDformer timeseries forecasting self-attention

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A Surrogate-Assisted Evolutionary Algorithm for Expensive Dynamic Multimodal Optimzation 13

A Surrogate-Assisted Evolutionary Algorithm for Expensive Dy...

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13th IEEE Congress on Evolutionary Computation, CEC 2024

作者： Wu, Xunfeng Liu, Songbai Ji, Junkai Ma, Lijia Leung, Victor C. M. Shenzhen University National Engineering Laboratory for Big Data System Computing Technology Shenzhen China College of Computer Science and Software Engineering Shenzhen University Shenzhen China The University of British Columbia Department of Electrical and Computer Engineering Vancouver Canada

ISBN: (纸本)9798350308365

Surrogate-assisted evolutionary algorithms (SAEAs) have demonstrated promising optimization performance in addressing expensive dynamic optimization problems or expensive multimodal optimization problems. However, none of existing SAEAs are designed specifically for tackling expensive dynamic multimodal optimization problems (EDMMOPs). Therefore, in this paper, a first SAEA for tackling EDMMOPs is proposed. First, a nearest density clustering is designed to divide the population into a number of subpopulations, enhancing the diversity of the population. Then, a surrogate-assisted evolutionary optimizer is developed to construct surrogate models for each subpopulation and evolve all solutions in subpopulations by means of the built surrogate models, accelerating the population's converge towards several optimal solutions rapidly. Finally, a transfer learning-based prediction is devised to generate initial samples for next environment by leveraging the stored training samples in the previous environments. To assess the performance of our proposed algorithm, a set of complex benchmark problems is adopted, and the experimental results confirm its superior performance over several competitive algorithms on most test cases. © 2024 IEEE.

关键词： Digital elevation model

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