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Applying Parallel Processing to Improve the Computation Speed of K-Nearest Neighbor Algorithm

Applying Parallel Processing to Improve the Computation Spee...

2020 International Conference on data analytics for Business and Industry: Way Towards a Sustainable Economy, ICDABI 2020

作者： Alanezi, Maha A. Alqaddoumi, Abdulla University of Bahrain Collage of Science Big Data Science and Analytics Master Program Sakhir Bahrain University of Bahrain Collage of Information Technology Department of Information System Sakhir Bahrain

ISBN: (纸本)9781728196756

K-Nearest Neighbor (KNN) is a widely used algorithm to gain an accurate and efficient classification. One of the drawbacks of the algorithm is the time required to calculate the distance for each point. In this paper, the aim is to speed up the KNN algorithm with the implementation of multi threads and multiprocessors to reduce the time to execute the algorithm. There are two medical datasets used to apply the KNN algorithm for the comparison of the sequential and parallel performance. The datasets utilized are Heart Test and Breast Cancer Wisconsin (Diagnostic) data Sets. The multiprocessing is used to parallelize the computation of the distance of KNN. The parallel KNN outperforms the sequential version with the speedup increase, leading to reduction in time for both the processes and threads. © 2020 IEEE.

关键词： Learning algorithms

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Comparing Naïve Bayes, Decision Tree and Logistic Regression Methods in Fraudulent Credit Card Transactions

Comparing Naïve Bayes, Decision Tree and Logistic Regressio...

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2020 International Conference on data analytics for Business and Industry: Way Towards a Sustainable Economy, ICDABI 2020

作者： Alanezi, Maha A. Homeed, Mawra T. Mohamed, Zahra S. Zeki, Ahmed M. University of Bahrain Big Data Science Analytics Master Program Collage of Science Sakhir Bahrain University of Bahrain Collage of Information Technology Department of Information System Sakhir Bahrain

ISBN: (纸本)9781728196756

data mining is utilized to explore banks' data to unravel any hidden scams and detect potential frauds. The aim of this paper is to compare between the Naïve Bayes, Decision Tree and Logistic Regression in fraudulent credit card transactions. Cross-Industry Standard Process for data Mining (CRISP-DM) is followed to achieve the aim of this research. In terms of accuracy, the best classification model was Logistic Regression with 94.6% accuracy, compared with the Decision Tree and Naïve Bayes that showed accuracy of 89.1% and 90.9% respectively. Other measures were also calculated like time needed to build the model among others. © 2020 IEEE.

关键词： Decision trees

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The largest genome-wide association study for breast cancer in Taiwanese Han population

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Breast Cancer Research and Treatment 2024年第2期203卷 291-306页

作者： Hsu, Yu-Ching Chen, Hung-Lin Cheng, Chi-Fung Chattopadhyay, Amrita Chen, Pei-Shan Lin, Che-Chen Chiang, Hsiu-Yin Liu, Ting-Yuan Huang, Chi-Hao Kuo, Chin-Chi Chuang, Eric Y. Lu, Tzu-Pin Tsai, Fuu-Jen Bioinformatics Program Taiwan International Graduate Program National Taiwan University Taipei Taiwan Bioinformatics Program Institute of Statistical Science Taiwan International Graduate Program Academia Sinica Taipei Taiwan Institute of Health Data Analytics and Statistics Department of Public Health College of Public Health National Taiwan University Taipei Taiwan Big Data Center China Medical University Hospital Taichung Taiwan Center for Translational Genomic Research Department of Medical Research China Medical University Hospital Taichung Taiwan Million-Person Precision Medicine Initiative Department of Medical Research China Medical University Hospital Taichung Taiwan Division of Breast Surgery Department of Surgery China Medical University Hospital Taichung Taiwan Division of Nephrology Department of Internal Medicine China Medical University Hospital Taichung Taiwan Department of Medical Research China Medical University Hospital Taichung Taiwan Bioinformatics and Biostatistics Core Center of Genomic and Precision Medicine National Taiwan University Taipei Taiwan Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan Biomedical Technology and Device Research Laboratories Industrial Technology Research Institute Hsinchu Taiwan Genetic Center Department of Medical Research China Medical University Hospital Taichung Taiwan

Purpose: Breast cancer is a molecularly heterogeneous disease, and multiple genetic variants contribute to its development and prognosis. Most of previous genome-wide association studies (GWASs) and polygenic risk scores (PRSs) analyses focused on studying breast cancers of Caucasian populations, which may not be applicable to other population. Therefore, we conducted the largest breast cancer cohort of Taiwanese population to fill in the knowledge gap. Methods: A total of 152,534 Participants recruited by China Medical University Hospital between 2003 and 2019 were filtered by several patient selection criteria and GWAS quality control steps, resulting in the inclusion of 2496 cases and 9984 controls for this study. We then conducted GWAS for all breast cancers and PRS analyses for all breast cancers and the four breast cancer subtypes, including luminal A, luminal B, basal-like, and HER2-enriched. Results: The GWAS analyses identified 113 SNPs, 50 of which were novel. The PRS models for all breast cancers and the luminal A subtype showed positively correlated trends between the PRS and the risk of developing breast cancer. The odds ratios (95% confidence intervals) for the groups with the highest PRS in all breast cancers and the luminal A subtype were 5.33 (3.79–7.66) and 3.55 (2.13–6.14), respectively. Conclusion: In summary, we explored the association of genetic variants with breast cancer in the largest Taiwanese cohort and developed two PRS models that can predict the risk of developing any breast cancer and the luminal A subtype in Taiwanese women. © 2023, The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature.

关键词： Breast cancer Genome-wide association study Polygenic risk score Taiwanese population

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Exploring the Relation between Blood Tests and Covid-19 Using Machine Learning

Exploring the Relation between Blood Tests and Covid-19 Usin...

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data analytics for Business and Industry: Way Towards a Sustainable Economy (ICDABI), International Conference on

作者： Mohamed Almansoor Nabil M. Hewahi Big Data Science & Analytics Program University of Bahrain University of Bahrain

ISBN: (数字)9781728196756

ISBN: (纸本)9781728196763

COVID-19 is a global pandemic that hit the world in 2019-2020 and caused massive losses. Every day, hundreds of thousands of tests are being done on possible infected cases. It usually takes several hours to get the results of virus test in advanced countries, whereas in other countries might take days. The aim of this study is to investigate whether normal blood medical tests help in detecting covid-19 using various machine learning approaches. If true, this would give an indication to people who should undergo the virus test. In this paper we independently use machine learning algorithms including support vector machines, adaptive boosting, random forest and k-nearest neighbors. These algorithms are then merged to form ensemble learning which leads to the classification. The results show that the ensemble learning is having the highest true positive rate of 30%. The obtained results show that normal blood tests do not help much in giving right indications about detecting COVID-19.

关键词： COVID-19 Biological system modeling Machine learning Support vector machines Blood Random forests Predictive models

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Random Forest vs. SVM vs. KNN in classifying Smartphone and Smartwatch sensor data using CRISP-DM

Random Forest vs. SVM vs. KNN in classifying Smartphone and ...

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data analytics for Business and Industry: Way Towards a Sustainable Economy (ICDABI), International Conference on

作者： Sadiq Jaffer Saleh Sayed Qasim Ali Ahmed M. Zeki Big Data Science & Analytics Master Program University of Bahrain College of Information Technology University of Bahrain

ISBN: (数字)9781728196756

ISBN: (纸本)9781728196763

Nowadays IoT sensors become one of the major sources of data, starting from home automation going to daily devices. Focusing on handsets that have the most significant contribution factor on data blooming and booming. The problem at hand is data mining methods comparison, for selecting the best method that serves sensor data. Methodology used was CRISP-DM. This paper found Random Forest data mining method to work best under the described circumstances.

关键词： Support vector machines Legged locomotion data mining Business Activity recognition Accelerometers Bibliographies

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Comparing Naïve Bayes, Decision Tree and Logistic Regression Methods in Fraudulent Credit Card Transactions

Comparing Naïve Bayes, Decision Tree and Logistic Regressio...

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data analytics for Business and Industry: Way Towards a Sustainable Economy (ICDABI), International Conference on

作者： Maha A. Alanezi Mawra T. Homeed Zahra S. Mohamed Ahmed M. Zeki Big Data Science & Analytics Master Program University of Bahrain Sakhir Kingdom of Bahrain Collage of Information Technology University of Bahrain Sakhir Kingdom of Bahrain

ISBN: (数字)9781728196756

ISBN: (纸本)9781728196763

关键词： Support vector machines Business Bayes methods Hidden Markov models Logistics data models Credit cards

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Prediction of Stock Price and Direction Using Neural Networks: datasets Hybrid Modeling Approach

Prediction of Stock Price and Direction Using Neural Network...

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data analytics for Business and Industry: Way Towards a Sustainable Economy (ICDABI), International Conference on

作者： Mohamed Al Aradi Nabil Hewahi Big Data Science & Analytics Master Program Collage of Science Univestity of Bahain Sakhir Kingdom of Bahrain Collage of Information Technology Univestity of Bahain Sakhir Kingdom of Bahrain

ISBN: (数字)9781728196756

ISBN: (纸本)9781728196763

Stock prices prediction is one of the most daunting tasks to achieve for day traders, investors, and data scientists. They are complex functions of a wide array of contributing factors that affects the movement dynamics. Politics, social outlook, the company's sales performance, and socio-economic factors all have an influence of how the stock is perceived globally and thus affecting the price movement based on the supply/demand balance. In this work a Framework is proposed to predict the price and movement direction by using multiple datasets that includes news sentiment, social sentiment, company earnings announcement, and technical indicators. A case study was applied on the Apple Inc. stock using Long short-term Memory Neural Networks (LSTM) and Deep Neural Networks (DNN). Results showed superiority of the LSTM model in both predicting stock value [ 75.4 MSE, +-2.52 PE] and the direction with [70.1% classification accuracy] over the DNN model which suffered from prediction lag and dependency on trend indicators achieving [53.1%] in predicting the direction of the stock.

关键词： Predictive models Machine learning Companies Neural networks Market research data models Recurrent neural networks

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Tweets Sentiment Analysis During COVID-19 Pandemic

Tweets Sentiment Analysis During COVID-19 Pandemic

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data analytics for Business and Industry: Way Towards a Sustainable Economy (ICDABI), International Conference on

作者： Maha A. Alanezi Nabil M. Hewahi Big Data Science & Analytics Master Program Collage of Science University of Bahrain Sakhir Kingdom of Bahrain Collage of Information Technology University of Bahrain Sakhir Kingdom of Bahrain

ISBN: (数字)9781728196756

ISBN: (纸本)9781728196763

The aim of this paper is to investigate the impact of social distance on people during COVID-19 pandemic using twitter sentiment analysis through a comparison between the k-means clustering and Mini-Batch k-means clustering approaches. To find the most common frequent words, two datasets have been investigated (WHO and Bahrain ministry of health datasets) to be as data preparation and exploration. Another two datasets (English and Arabic datasets) are used in the clustering of k-means. In this paper, a comparison between k-means and Mini-Batch k-means is performed to find a pattern. The word frequency shows that there are several words related to the pandemic. The sentiment analysis result show that in USA, Australia, Nigeria, Canada, and England, most tweets are neutral. However, the majority of tweets are positive tweets from both Italy and India. In addition, the k-means cluster in the English dataset reveals several cluster trends where COVID-19 pandemic procedures are addressed in cluster 1, and health workers are encouraged in cluster 3.

关键词： COVID-19 Social networking (online) Pandemics Sentiment analysis Blogs Elbow Viruses (medical)

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Automatic Extraction of Medication Mentions from Tweets-Overview of the BioCreative VII Shared Task 3 Competition

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database : the journal of biological databases and curation 2023年第2023期2023卷 baac108页

作者： Davy Weissenbacher Karen O'Connor Siddharth Rawal Yu Zhang Richard Tzong-Han Tsai Timothy Miller Dongfang Xu Carol Anderson Bo Liu Qing Han Jinfeng Zhang Igor Kulev Berkay Köprü Raul Rodriguez-Esteban Elif Ozkirimli Ammer Ayach Roland Roller Stephen Piccolo Peijin Han V G Vinod Vydiswaran Ramya Tekumalla Juan M Banda Parsa Bagherzadeh Sabine Bergler João F Silva Tiago Almeida Paloma Martinez Renzo Rivera-Zavala Chen-Kai Wang Hong-Jie Dai Luis Alberto Robles Hernandez Graciela Gonzalez-Hernandez Department of Computational Biomedicine Cedars-Sinai Medical Center Los Angeles CA USA. DBEI The Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Computer Science and Information Engineering National Central University No. 300 Zhongda Rd Zhongli District Taoyuan 320 Taiwan. IoX Center National Taiwan University Da'an District Section 4 Roosevelt Rd No. 1 Barry Lam Hall Taipei 106 Taiwan. Research Center for Humanities and Social Sciences Academia Sinica No. 128 Section 2 Academia Rd Nangang District Taipei 115 Taiwan. Computational Health Informatics Program Boston Children's Hospital Boston MA USA. Department of Pediatrics Harvard Medical School Boston MA USA. NVIDIA Santa Clara CA USA. Department of Statistics Florida State University Tallahassee FL USA. Data and Analytics Chapter F. Hoffmann-La Roche Ltd Switzerland. Pharmaceutical Research and Early Development Roche Innovation Center Basel Switzerland. Speech and Language Technology Lab DFKI Berlin Germany. Department of Biology Brigham Young University Provo UT USA. Department of Computational Medicine and Bioinformatics Medical School University of Michigan Ann Arbor MI USA. Department of Learning Health Sciences Medical School University of Michigan Ann Arbor MI USA. School of Information University of Michigan Ann Arbor MI USA. Department of Computer Science Georgia State University Atlanta GA USA. CLaC Labs Concordia University Montreal Canada. DETI Institute of Electronics and Informatics Engineering of Aveiro University of Aveiro Portugal. Department of Computation University of A Coruña Spain. Computer Science and Engineering Department Universidad Carlos III de Madrid Madrid Spain. Big Data Laboratory Chunghwa Telecom Laboratories Taoyuan Taiwan. Department of Computer Science National Yang Ming Chiao Tung University Hsinchu Taiwan. Department of Electrical Engineering College of Electrical Engineering and Computer Sci

This study presents the outcomes of the shared task competition BioCreative VII (Task 3) focusing on the extraction of medication names from a Twitter user's publicly available tweets (the user's 'timeline'). In general, detecting health-related tweets is notoriously challenging for natural language processing tools. The main challenge, aside from the informality of the language used, is that people tweet about any and all topics, and most of their tweets are not related to health. Thus, finding those tweets in a user's timeline that mention specific health-related concepts such as medications requires addressing extreme imbalance. Task 3 called for detecting tweets in a user's timeline that mentions a medication name and, for each detected mention, extracting its span. The organizers made available a corpus consisting of 182 049 tweets publicly posted by 212 Twitter users with all medication mentions manually annotated. The corpus exhibits the natural distribution of positive tweets, with only 442 tweets (0.2%) mentioning a medication. This task was an opportunity for participants to evaluate methods that are robust to class imbalance beyond the simple lexical match. A total of 65 teams registered, and 16 teams submitted a system run. This study summarizes the corpus created by the organizers and the approaches taken by the participating teams for this challenge. The corpus is freely available at https://***/tasks/biocreative-vii/track-3/. The methods and the results of the competing systems are analyzed with a focus on the approaches taken for learning from class-imbalanced data.

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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