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arXiv 2019年

作者： Zhang, Zhao Tang, Zemin Zhang, Zheng Wang, Yang Qin, Jie Wang, Meng School of Computer Science and Technology Soochow University China Key Laboratory of Knowledge Engineering with Big Data Ministry of Education School of Computer and Information Hefei University of Technology Hefei China Bio-Computing Research Center Harbin Institute of Technology Shenzhen518055 China Inception Institute of Artificial Intelligence Abu Dhabi United Arab Emirates

The Deep Convolutional Neural Networks (CNNs) have obtained a great success for pattern recognition, such as recognizing the texts in images. But existing CNNs based frameworks still have several drawbacks: 1) the traditaional pooling operation may lose important feature information and is unlearnable;2) the traditional convolution operation optimizes slowly and the hierarchical features from different layers are not fully utilized. In this work, we address these problems by developing a novel deep network model called Fully-Convolutional Intensive Feature Flow Neural Network (IntensiveNet). Specifically, we design a further dense block called intensive block to extract the feature information, where the original inputs and two dense blocks are connected tightly. To encode data appropriately, we present the concepts of dense fusion block and further dense fusion operations for our new intensive block. By adding short connections to different layers, the feature flow and coupling between layers are enhanced. We also replace the traditional convolution by depthwise separable convolution to make the operation efficient. To prevent important feature information being lost to a certain extent, we use a convolution operation with stride 2 to replace the original pooling operation in the customary transition layers. The recognition results on large-scale Chinese string and MNIST datasets show that our IntensiveNet can deliver enhanced recognition results, compared with other related deep models. Copyright © 2019, The Authors. All rights reserved.

关键词： Convolution

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Frequency modulation and voltage locking of the Voltage Controlled Spin Oscillators (VCSOs)

arXiv

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arXiv 2019年

作者： Zeng, Lang Chen, Hao-Hsuan Zhang, Deming Gao, Tianqi Long, Mingzhi Zhang, Youguang Zhao, Weisheng Fert Beijing Institute Beijing Advanced Innovation Center for Big Data and Brain Computing Beihang University Beijing100191 China School of Microelectronics Beihang University Beijing100191 China Hefei Innovation Research Institute Beihang University Hefei Anhui230013 China School of Electronic and Information Engineering Beihang University Beijing100191 China

The oscillating frequency of typical Spin Torque Nano Oscillators (STNOs) can be modulated by injected DC current or bias magnetic field. And phase locking of STNOs to an external Radio Frequency (RF) signal can be imposed by AC current or RF bias magnetic field. However, in this study, we have proposed a Voltage Controlled Spin Oscillators (VCSOs) by introducing Voltage Controlled Magnetic Anisotropy (VCMA) effect. The oscillating frequency of VCSOs can be modulated by VCMA voltage as well as injected DC current. Furthermore, we have shown a novel locking mechanism caused by AC VCMA voltage. Both the frequency modulation and voltage locking mechanism are analyzed theoretically by Nonlinear Auto-oscillator theory and verified by numerical simulation. At last, we proposed that by utilizing negative capacitance material to enhance VCMA effect, the locking range for voltage locking can be expanded thus may lead to easy mutual synchronization of multiple VCSOs. Copyright © 2019, The Authors. All rights reserved.

关键词： Magnetic anisotropy

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Flickr group recommendation with auxiliary information in heterogeneous information networks

Flickr group recommendation with auxiliary information in he...

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作者： Wang, Yueyang Xia, Yuanfang Tang, Siliang Wu, Fei Zhuang, Yueting Key Laboratory of Big Data Intelligent Computing of Zhejiang Province Innovation Joint Research Center for ICPS College of Computer Science and Technology Zhejiang University Hangzhou China

Over the past few years, the appropriate utilization of user communities or image groups in social networks (i.e., Flickr or Facebook) has drawn a great deal of attention. In this paper, we are particularly interested in recommending preferred groups to users who may favor according to auxiliary information. In real world, the images captured by mobile equipments explicitly record a lot of contextual information (e.g., locations) about users generating images. Meanwhile, several words are employed to describe the particular theme of each group (e.g., "Dogs for Fun Photos" image group in Flickr), and the words may mention particular entities as well as their belonging categories (e.g., "Animal"). In fact, the group recommendation can be conducted in heterogeneous information networks, where informative cues are in general multi-typed. Motivated by the assumption that the auxiliary information (visual features of images, mobile contextual information and entity-category information of groups in this paper) in heterogeneous information networks will boost the performance of the group recommendation, this paper proposes to combine auxiliary information with implicit user feedback for group recommendation. In general, the group recommendation in this paper is formulated as a non-negative matrix factorization (NMF) method regularized with user–user similarity via visual features and heterogeneous information networks. Experiments show that our proposed approach outperforms other counterpart recommendation approaches. © 2016, Springer-Verlag Berlin Heidelberg.

关键词： Non-negative matrix factorization

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Design of intelligent Robot Platform based on Multi-sensor Fusion

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Journal of Physics: Conference Series 2020年第1期1606卷

作者： Ya Dajin Lei Xiaochun Li Yue Chen Junyan Huang Rongcun Lan Lin School of computer and information security Guilin University of Electronic Technology Guilin 541004 China Guangxi Colleges and Universities Key Laboratory of Intelligent Processing of Computer Images and Graphics Guilin 541004 China Guangxi Cooperative Innovation Center of cloud computing and Big Data Guilin University of Electronic Technology Guilin 541004 China

The mobile robot adapts to the more complicated indoor and outdoor environments, and can expand its scope of application. In order to reduce the influence of the cumulative error caused by navigation in complex environments, the indoor mobile robot that combines Inertial Measurement Unit (IMU) and encoder fusion is designed and implemented. In view of the limitations of the traditional single lidar scheme, a Multi-sensor Fusion scheme is proposed to achieve indoor map construction, path planning, multi-point navigation and other functions, and a MSIF KartoSLAM (Multi-sensor Information Fusion) algorithm is proposed, which combines the KartoSLAM algorithm and Multi-sensor information to achieve map construction in complex environments. Through comprehensive testing in the indoor environment, the results show that the Multi-sensor Fusion scheme is superior to the traditional single lidar scheme, and can achieve higher accuracy in mapping and navigation. At the same time, the robot platform can also be combined with the Internet of Things technology and integrated into intelligent housing system.

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Design of People Flow Monitoring System in Public Place based on MD-MCNN

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Journal of Physics: Conference Series 2020年第1期1606卷

作者： Xiong Tianmin Lei Xiaochun Zheng Xingwen Chen Junyan Feng Yizhou School of computer and information security Guilin University of Electronic Technology Guilin 541004 China Guangxi Colleges and Universities Key Laboratory of Intelligent Processing of Computer Images and Graphics Guilin 541004 China Guangxi Cooperative Innovation Center of cloud computing and Big Data Guilin University of Electronic Technology Guilin 541004 China

Due to the limitation of hardware resources, the traditional people flow monitoring system based on computer vision in public places can't meet different crowd-scale scenarios. Therefore, a people flow monitoring system based on MD-MCNN algorithm is designed, which is an application system combining the improved SSD object detection algorithm MNSSD and MCNN density map regression algorithm. In the initial stage, the system uses MNSSD for accurate detection and counting. If the people flow gradually reaches a certain threshold, the system automatically uses MCNN to estimate people flow until the people flow falls below the threshold. Through the experimental verification, the system can realize the people flow statistics of low-density and high-density people in different scenarios, and can be applied on the existing embedded platform. This scheme can be extended to smart cities, smart scenic spots, smart transportation and other fields.

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Multi-Thread Concurrent Compression Algorithm for Genomic big data

Multi-Thread Concurrent Compression Algorithm for Genomic Bi...

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IEEE International Conference on Parallel and Distributed computing, Applications and Technologies (PDCAT)

作者： Yimu Ji Shuai Chen Haichang Yao Houzhi Fang Kui Li Shangdong Liu Zhengyuan Xie Kairui Wang School of Computer Science Nanjing University of Posts and Telecommunications Institute of High Performance Computing and Big Data Nanjing University of Posts and Telecommunications Nanjing Center of HPC China Jiangsu HPC and Intelligent Processing Engineer Research Center Nanjing China School of Computer Science Nanjing University of Posts and Telecommunications Nanjing China School of Computer Science Nanjing University of Posts and Telecommunications School of Computer and Software Nanjing Institute of Industry Technology Nanjing China University of Toronto Toronto Canada BSc Mathematics with Finance University of Liverpool Liverpool United Kingdom

ISBN: (数字)9781728126166

ISBN: (纸本)9781728126173

At present, there are many excellent genome compression algorithms with high genome compression ratio. However, there is a lack of highly efficient compression algorithms for simultaneous compression of a large number of genomes. This manuscript presents an algorithm, which is called FastLNGC, for simultaneous compression of a large amount of genome data based on multi-thread concurrency. This algorithm is based on the LNGC (Large Number of Genomes Compressor) algorithm, and adopts multi-thread technology to achieve concurrent processing of genome data compression. A large number of experiments show that FastLNGC has better performance on compression of a large number of genes. The source code of FastLNGC is available at https://***/APandaThief/FastLNGC.

关键词： Bioinformatics Genomics Compression algorithms Instruction sets Telecommunications Computer science Concurrent computing

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ADAM CHALLENGE: DETECTING AGE-RELATED MACULAR DEGENERATION FROM FUNDUS IMAGES

arXiv

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arXiv 2022年

作者： Fang, Huihui Li, Fei Fu, Huazhu Sun, Xu Cao, Xingxing Lin, Fengbin Son, Jaemin Kim, Sunho Quellec, Gwenole Matta, Sarah Shankaranarayana, Sharath M. Chen, Yi-Ting Wang, Chuen-Heng Shah, Nisarg A. Lee, Chia-Yen Hsu, Chih-Chung Xie, Hai Lei, Baiying Baid, Ujjwal Innani, Shubham Dang, Kang Shi, Wenxiu Kamble, Ravi Singhal, Nitin Wang, Ching-Wei Lo, Shih-Chang Orlando, José Ignacio Bogunović, Hrvoje Zhang, Xiulan Xu, Yanwu The ADAM Challenge State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science Guangzhou China Intelligent Healthcare Unit Baidu Inc. Beijing China The Institute of High Performance Computing Agency for Science Technology and Research Singapore CONICET Yatiris lab of Pladema Institute Tandil Argentina Department of Ophthalmology and Optometry Medical University of Vienna Vienna Austria VUNO Inc Seoul Korea Republic of Inserm UMR 1101 BrestF-29200 France Univ Bretagne Occidentale BrestF-29200 France Zasti India Pvt. Ltd. India Graphen.Inc Muen Biomedical and Optoelectronics Technologies Inc Taiwan Department of Electrical Engineering Indian Institute of Technology Rajasthan Jodhpur India Department of Electrical Engineering National United University Taiwan Institute of Data Science Department of Statistics National Cheng Kung University Taiwan Shenzhen University Shenzhen China SGGS Institute of Engineering and Technology Nanded India Suzhou Tisu Information Technology Co. Ltd China AIRA Matrix Mumbai India Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taiwan

Age-related macular degeneration (AMD) is the leading cause of visual impairment among elderly in the world. Early detection of AMD is of great importance, as the vision loss caused by this disease is irreversible and permanent. Color fundus photography is the most cost-effective imaging modality to screen for retinal disorders. Cutting edge deep learning based algorithms have been recently developed for automatically detecting AMD from fundus images. However, there are still lack of a comprehensive annotated dataset and standard evaluation benchmarks. To deal with this issue, we set up the Automatic Detection challenge on Age-related Macular degeneration (ADAM), which was held as a satellite event of the ISBI 2020 conference. The ADAM challenge consisted of four tasks which cover the main aspects of detecting and characterizing AMD from fundus images, including detection of AMD, detection and segmentation of optic disc, localization of fovea, and detection and segmentation of lesions. As part of the ADAM challenge, we have released a comprehensive dataset of 1200 fundus images with AMD diagnostic labels, pixel-wise segmentation masks for both optic disc and AMD-related lesions (drusen, exudates, hemorrhages and scars, among others), as well as the coordinates corresponding to the location of the macular fovea. A uniform evaluation framework has been built to make a fair comparison of different models using this dataset. During the ADAM challenge, 610 results were submitted for online evaluation, with 11 teams finally participating in the onsite challenge. This paper introduces the challenge, the dataset and the evaluation methods, as well as summarizes the participating methods and analyzes their results for each task. In particular, we observed that the ensembling strategy and the incorporation of clinical domain knowledge were the key to improve the performance of the deep learning models. © 2022, CC BY-NC-ND.

关键词： Cost effectiveness

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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Exploiting images for video recognition with hierarchical generative adversarial networks

arXiv

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arXiv 2018年

作者： Yu, Feiwu Wu, Xinxiao Sun, Yuchao Duan, Lixin Beijing Laboratory of Intelligent Information Technology School of Computer Science Beijing Institute of Technology Big Data Research Center University of Electronic Science and Technology of China

Existing deep learning methods of video recognition usually require a large number of labeled videos for training. But for a new task, videos are often unlabeled and it is also time-consuming and labor-intensive to annotate them. Instead of human annotation, we try to make use of existing fully labeled images to help recognize those videos. However, due to the problem of domain shifts and heterogeneous feature representations, the performance of classifiers trained on images may be dramatically degraded for video recognition tasks. In this paper, we propose a novel method, called Hierarchical Generative Adversarial Networks (HiGAN), to enhance recognition in videos (i.e., target domain) by transferring knowledge from images (i.e., source domain). The HiGAN model consists of a low-level conditional GAN and a high-level conditional GAN. By taking advantage of these two-level adversarial learning, our method is capable of learning a domain-invariant feature representation of source images and target videos. Comprehensive experiments on two challenging video recognition datasets (i.e. UCF101 and HMDB51) demonstrate the effectiveness of the proposed method when compared with the existing state-of-the-art domain adaptation methods. Copyright © 2018, The Authors. All rights reserved.

关键词： Generative adversarial networks

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bigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2023年第6期20卷 824-835页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

bigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. We observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

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