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Characterization of complete mitochondrial genome of coonstriped shrimpPandalus hypsinotus(Decapoda: Pandalidae)

Mitochondrial DNA Part B 2019年第1期4卷 294-295页

作者： Nack-keun Kim Sapto Andriyono Kyung Mi Jung Gwang Ho Choi Tae-Ho Yoon Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Fisheries and Marine Faculty Universitas Airlangga C Campus Jl. Mulyorejo Surabaya East Java Indonesia Dokdo Fisheries Research Center National Institute of Fisheries Science Pohang Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

The complete mitochondrial genome of the coonstriped,Pandalus hypsinotuswas determined by the MiSeq sequencing platform. The mitogenome ofP. hypsinotus(15,909 bp) encoded the 13 protein-coding genes, 22 tRNA genes, two rRNA genes, non-coding, control region (D-Loop). Phylogenetic analysis based on the full mitochondrial genome sequences showed thatP. hypsinotusis most closely related toP. borealis(86%) clustering together withChlorotocus crassicornisin Pandalidae. The complete mitogenome sequence ofP. hypsinotuswould contribute to the scientific management for conservation of its resources in East/Japan Sea.

关键词： Next-generation sequencing decapoda mitogenome Dokdo Pandalidae

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Complete mitochondrial genome of green shrimp,Chlorotocus crassicornis(Crustacea: Decapoda: Pandalidae) in Korean water

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Mitochondrial DNA Part B 2019年第2期4卷 2206-2207页

作者： GyungRyul Kim Md. Jobaidul Alam Hyun-Woo Kim Sapto Andriyono Fisheries Resources Research Division National Institute of Fisheries Science (NIFS) Busan South KoreaInterdisciplinary program of Biomedical Engineering Pukyong National University Busan South Korea Interdisciplinary program of Biomedical Engineering Pukyong National University Busan South Korea Department of Marine Biology Pukyong National University Busan Korea Interdisciplinary program of Biomedical Engineering Pukyong National University Busan South KoreaDepartment of Marine Fisheries and Marine Faculty Universitas Airlangga C Campus Jl Mulyorejo Surabaya East Java Indonesia

The complete mitochondrial genome of green shrimp,Chlorotocus crassicornis(Costa, 1871) was generated by the combination of next-generation sequencing platform and long PCR technique. The mitochondrial genome ofC. crassicorniswas 16,500 bp, in which 13 protein-coding genes, two ribosomal RNAs, 22 transfer RNAs, and a putative control region was encoded. Based on the 13 protein-coding genes region, the phylogenetic tree was clearly demonstrated thatC. crassicornisis closest toPandalopsis japonicaandPandalus borealiswith 77% identity. This mitogenome information will be helpful for the further studies of deep-sea fisheries resources management strategies in Korea includingC. crassicornisspecies.

关键词： Chlorotocus crassicornis Pandalidae crustacean mitochondrial genome

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Complete mitochondrial genome of Spanish flag snapper,Lutjanus carponotatus(Perciformes: Lutjanidae)

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Mitochondrial DNA Part B 2019年第1期4卷 568-569页

作者： Gyungryul Kim Ji-Hyun Lee Md. Jobaidul Alam Soo Rin Lee Sapto Andriyono Fisheries Resource Research Division National Institute of Fisheries Science (NIFS) Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaDepartment of Marine Fisheries and Marine Faculty Universitas Airlangga Surabaya East Java Indonesia

The comple mitogenome of Spanish flag snapper,Lutjanus carponotatuswas determined by next generation sequencing (NGS) technique. The mitogenome ofL. carponotatus(16,514bp) habors 37 genes (22 tRNAs, 2 rRNAs, 13 polypeptides) and two non-coding regions, the origin of light strand replication (OL) and the putative control region (D-Loop). Among the 37 genes inL. carponotatusmitogenome, 28 were encoded on the H-strand, whereas only 9 were on the L-strand. Phylogenetic relationship showed that the full mitochondrial genome sequencesL. carponotatuswas most closely related toLutjanus russelliiwith 93% sequence identity clustering withLutjanus fulviflamma(92%) andLutjanus vitta(91%).

关键词： Next generation sequencing Lutjanus carponotatus mitogenome Spanish flag snapper

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The effect of wavelength on a floating body and its location for wave energy absorption using CFD 28

The effect of wavelength on a floating body and its location...

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28th International Ocean and Polar engineering Conference, ISOPE 2018

作者： Kim, Hyunjong Parthasarathy, Nanjundan Li, Kui Ming Choi, Yoon Hwan Oshima, Nobuyuki Lee, Yeon Won Interdisciplinary program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Korea Republic of Korea Marine Equipment Research Institute Busan Korea Republic of Research Institute of Industrial Science and Technology Pukyong National University Busan Korea Republic of Graduate School of Engineering Hokkaido University Sapporo Hokkaido Japan Department of Mechanical Design Engineering Pukyong National University Busan Korea Republic of

ISBN: (纸本)9781880653876

In order to design a wave energy generating system of a floating type, a 6- Degrees Of Freedom (DOF) motion technique was applied to Computational Fluid Dynamics (CFD) analysis on this floating body and the behavior is interpreted according to the nature of the incoming waves. In the numerical study, the tuning factor concept is employed, as it explains the relation between the maximum pitch angle and the length of the floating body and wavelength. The relation between tuning factor & pitch period for the generated waves is compared to analyze the effects of wave energy absorption. Linear waves are generated in a tank model using a single floater. In this paper, we focus on wavelength of a floater and 14 cases have been modeled for the same. It was found that the wave energy absorption varies in different parameters of wavelengths and also the different locations of the floating body in a wave affect the wave energy absorption, thus necessitating the importance of the location of a floater in a wave and its effect on wave energy absorption. Copyright © 2018 by the International Society of Offshore and Polar Engineers (ISOPE)

关键词： Computational fluid dynamics

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High-Resolution Hydrogen Molecule Detection Utilizing a Nanocandle-Based Optical Sensor 16

High-Resolution Hydrogen Molecule Detection Utilizing a Nano...

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16th Pacific Rim Conference on Lasers and Electro-Optics, CLEO-PR 2024

作者： Park, Nu-Ri Kim, Min-Joong Lee, Jongsu Seo, Minah Ryu, Yong-Sang Kim, Myung-Ki KU-KIST Graduate School of Converging Science and Technology Korea University Seoul02841 Korea Republic of Korea Institute of Science and Technology Sensor System Research Center Seoul02792 Korea Republic of Northwestern University Department of Electrical Engineering and Computer Science EvanstonIL60208 United States School of Biomedical Engineering Korea University Seoul02481 Korea Republic of Interdisciplinary Program in Precision Public Health Korea University Seoul02481 Korea Republic of

Our research introduces a novel method for safe hydrogen detection. We've developed an advanced nano-candle sensor, combining Pd with nano-candles, enabling accurate detection of low-concentration hydrogen ( ©... 详细信息

ISBN: (纸本)9798350372076

关键词： Nanoclay

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Study of Cell Encapsulation System in Using Thai Silk Fibroin-Based Hydrogel

Study of Cell Encapsulation System in Using Thai Silk Fibroi...

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biomedical engineering International Conference (BMEiCON)

作者： Nitchaya Suksomthong Sasitorn Aueviriyavit Juthamas Ratanavaraporn Interdisciplinary Program of Biomedical Engineering Faculty of Engineering Chulalongkorn University Bangkok Thailand Nano Safety and Bioactivity Research Team National Nanotechnology Center National Science and Technology Development Agency (NSTDA) Pathum Thani Thailand Biomedical Engineering Program Biomedical Engineering Research Center Biomaterial Engineering for Medical and Health Research Unit Faculty of Engineering Chulalongkorn University Bangkok Thailand

Designing biomimetic tissue models and developing scaffolds under cell-compatible protocols are a challenge in the field of tissue engineering. Cell encapsulation technique was selected with hydrogel fabrication due to its similarity to the condition within the human body. This study proposed SF-based hydrogels with the aim of application as cell encapsulation matrix. The vital properties, including gelation, diffusion, and cell viability were evaluated. SF/DMPG hydrogels exhibited rapid gelation and sufficient diffusion. L929 cells encapsulated in SF/DMPG survived after the fabrication process, with proliferation occurred at day 1 of culture which was done in static condition. The developed hydrogels showed potential application as a cell encapsulation matrix using tissue engineering, especially bioink.

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Multivariate feature selection using random subspace classifiers for gene expression data

Multivariate feature selection using random subspace classif...

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7th IEEE International Conference on Bioinformatics and Bioengineering, BIBE

作者： Kamath, Vidya P. Hall, Lawrence O. Yeatman, Timothy J. Eschrich, Steven A. Biomedical Engineering Program University of South Florida H. Lee Moffitt Cancer Center and Research Institute Tampa FL United States Dept. of Computer Science and Engineering University of South Florida Tampa FL United States Dept. Interdisciplinary Oncology H. Lee Moffitt Cancer Center and Research Institute Tampa FL United States

ISBN: (纸本)1424415098

Gene expression analysis techniques identify important genes that predict specified outcomes based on sample characteristics. Given the small sample sizes common to these studies and the large dimensionality of the data, feature selection methods are essential. In addition, cancer-related expression analysis often involves imbalanced datasets due to rare forms of disease. Popular methods of feature selection employ univariate techniques to identify the features most suitable for analysis. We propose a multivariate technique for selecting accurate subsets of features using an approach based on random subspaces. The random subspace method is used to explore random combinations of features and only subspaces that produce accurate classifiers are retained. The method is tested on two independent gene expression datasets and compared with a univariate approach. The multivariate feature selection method resulted in a 33% improvement in classification accuracy overall and 90% improvement in classification accuracy for the minority class. ©2007 IEEE.

关键词： Gene expression

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Characterization of the complete mitochondrial genome ofSilurus soldatoviin Korean river

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Mitochondrial DNA Part B 2019年第2期4卷 3886-3887页

作者： Md. Jobaidul Alam Mahmoud Aboalyamin Soliman Khalil Kyung Su Kim Sapto Andriyono Chang Geun Choi Hyun-Woo Kim Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of Korea KOICA-PKNU International Graduate Program of Fisheries Science Graduate School of Global Fisheries Pukyong National University Busan Republic of Korea Gyeongsangnam-do Freshwater Fish Research Center Miryang Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaFisheries and Marine Faculty Universitas Airlangga Surabaya Indonesia Department of Ecological Engineering Pukyong National University Busan Republic of Korea Interdisciplinary Program of Biomedical Mechanical and Electrical Engineering Pukyong National University Busan Republic of KoreaKOICA-PKNU International Graduate Program of Fisheries Science Graduate School of Global Fisheries Pukyong National University Busan Republic of KoreaDepartment of Marine Biology Pukyong National University Busan Republic of Korea

The complete mitochondrial genome ofSilurus soldatovifirstly collected from a native Korean river was determined by the bioinformatics assembly of the next-generation sequencing (NGS) reads. The circular mitogenome was 16,525 bp in length which harbored canonical 13 protein-coding genes, 22 tRNAs, and 2 rRNAs, which was identical to those of family Siluridae. Twenty-eight genes were located on H strand, whereas the remaining nine genes were on L strand. Except for COX1 gene (GTG), other 12 protein-coding genes were predicted typical start codons (ATG). Among the currently known mitogenome sequences, S. soldatovishowed highest identity (99.38%) to the Chinese haplotype ofS. soldatovi(NC022723) followed by the Chinese haplotype ofSilurus asotus(JX087351). Interestingly, intraspecies variations ofS. asotusare higher than those of interspecies and further study should be made to elucidate the evolutional relationship between twoSilurusspecies.

关键词： Next-generation sequencing Silurus soldatovi mitochondrial genome alien species

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Development of videostrobokymography for the quantitative analysis of laryngeal vibratory pattern

Development of videostrobokymography for the quantitative an...

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9th World Congress on Medical Informatics, MedInfo 1998

作者： Lee, Jae Sung Kim, Eomjun Park, Kwang Suk Sung, Mi Young Sung, Myung-Whun Kim, Kwang Hyun Interdisciplinary Program in Medical and Biological Engineering Major Seoul National University Seoul Korea Republic of Department of Computer Science Inchon University Inchon Korea Republic of Department of Biomedical Engineering College of Medicine Seoul National University 28 Yungun-Dong Chongno-Gu Seoul 110-744 Korea Republic of Department of Otolaryngology Head and Neck Surgery Seoul National University Seoul Korea Republic of

ISBN: (纸本)9051994079

We developed a new analysis technique for the assessment of irregular vibratory movement of vocal folds. Successive frames of pre-recorded video images from videostroboscopy were transferred to computer memory and vibratory track of one selected point was described as a waveform by displaying the same lines of all frames along the vertical direction. Glottal area waveform, which was normalized with glottal length, was composed to quantitatively assess the overall vibratory pattern of vocal folds. By applying this technique, irregular vibratory patterns of multiple regions, such as asynchronized registration of glottal cycles, could be easily visualized It would be possible to monitor and analyze the pathologic changes of vocal fold movement by means of this newly developed system. © 1998 IMIA. All rights reserved.

关键词： Speech

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Cartilage tissue engineering using a elastic poly (L-lactide-co-Ε- caprolactone) scaffold

Cartilage tissue engineering using a elastic poly (L-lactide...

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作者： Jung, Youngmee Kim, Soo Hyun Kim, Sang-Heon Kim, Young Ha Min, Byoung Goo Biomaterials Research Center Korea Institute of Science and Technology P.O.Box 131 Cheongryang Seoul 130-650 Korea Republic of Interdisciplinary Program Medical and Biological Engineering Major Seoul National University 28 Yeongeon Chongro Seoul 110-790 Korea Republic of Department of Materials Science and Engineering Gwangju Institute of Science and Technology 1 Oryang Buk Gwangju 500-712 Korea Republic of Department of Biomedical Engineering Seoul National University 28 Yeongeon Chongro Seoul 110-790 Korea Republic of

Mechano-active scaffolds were fabricated from very elastic poly(L-lactide-co-Ε-carprolactone). The scaffolds with 80% porosity and 300-500 um pore size were prepared by a gel-pressing method. As a control group for elastic properties of polymer scaffolds, rigid poly L-lactide scaffolds were fabricated. The scaffolds were seeded with chondrocytes and cultured to evaluate the effect of elastic properties of polymer scaffolds for the differentiation and the ECM secretion of chondrocytes. Also, the chondrocytes-seeded constructs were implanted in nude mice subcutaneously to investigate their biocompatibility and cartilage formation. From the biochemical analyses, chondrogenic differentiation was sustained and enhanced significantly and chondral extracellular matrix was increased through mechanical stimulation of dynamic environment in the dynamic body systems. Histological analysis showed that implants of PLCL constructs formed mature and well-developed cartilaginous tissue, as evidenced by chondrocytes within lacunae. Consequently, the elastic PLCL scaffolds could be used to engineer cartilage in mechanically dynamic environments.

关键词： Cartilage

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