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Classes and phyla of the kingdom Fungi

Fungal Diversity 2024年第5期124卷 1-165页

作者： Nalin N.Wijayawardene Kevin D.Hyde Kirill V.Mikhailov Gabor Peter Andre Aptroot Carmen L.A.Pires‑Zottarelli Bruno T.Goto Yuri S.Tokarev Danny Haelewaters Samantha C.Karunarathna Paul M.Kirk Andre L.C.M.de A.Santiago Ramesh K.Saxena Nathan Schoutteten Madhara K.Wimalasena Vladimir V.Aleoshin Abdullah M.S.Al‑Hatmi Kahandawa G.S.U.Ariyawansa Amanda R.Assuncao Thushara C.Bamunuarachchige Hans‑Otto Baral D.Jayarama Bhat Janusz Błaszkowski Teun Boekhout Nattawut Boonyuen Michael Brysch‑Herzberg Bin Cao Jonathan Cazabonne Xue‑Mei Chen Claudia Coleine Dong‑Qin Dai Heide‑Marie Daniel Suzana B.G.da Silva Francisco Adriano de Souza Somayeh Dolatabadi Manish K.Dubey Arun K.Dutta Aseni Ediriweera Eleonora Egidi Mostafa S.Elshahed Xinlei Fan Juliana R.B.Felix Mahesh C.A.Galappaththi Marizeth Groenewald Li‑Su Han Bo Huang Vedprakash G.Hurdeal Anastasia N.Ignatieva Gustavo H.Jeronimo Ana L.de Jesus Serhii Kondratyuk Jaturong Kumla Martin Kukwa Qirui Li Juliana L.R.Lima Xiao‑Yong Liu Wenhua Lu H.Thorsten Lumbsch Hugo Madrid Franco Magurno Guy Marson Eric H.C.McKenzie Audrius Menkis Armin Mešić Elaine C.R.Nascimento Elena S.Nassonova Yong Nie Naasson V.L.Oliveira Emilia A.Ossowska Julia Pawłowska Ursula Peintner Igor R.Pozdnyakov Bhagya M.Premarathne A.K.Hasith Priyashantha C.Alisha Quandt Mariana B.Queiroz Kunhiraman C.Rajeshkumar Mubashar Raza Niranjan Roy Milan C.Samarakoon Alessandra A.Santos Lidiane A.Santos Felix Schumm Laura Selbmann Faruk Selcuk D.Rabern Simmons Anastasia V.Simakova Maudy Th.Smith Onden Paraparath Sruthi Nakarin Suwannarach Kazuaki Tanaka Saowaluck Tibpromma Elias O.Tomas Merve Ulukapı Nicolas Van Vooren Dhanushka N.Wanasinghe Evi Weber Qianzhen Wu Er Fu Yang Ryuichi Yoshioka Noha H.Youssef Annemarie Zandijk Gui‑Qing Zhang Jin‑Yong Zhang Heng Zhao RuiLin Zhao Oleg A.Zverkov Marco Thines Sergey A.Karpov Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanPeople’s Republic of China Tropical Microbiology Research Foundation 96/N/10Meemanagoda RoadPannipitiya 10230Sri Lanka Department of Bioprocess Technology Faculty of TechnologyRajarata UniversityMihintaleSri Lanka Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand School of Science Mae Fah Luang UniversityChiangRai 57100Thailand Innovative Institutefor Plant Health Zhongkai University of Agriculture and EngineeringGuangzhou 510225People’s Republic of China CAS Key Laboratory for Plant Biodiversity and Biogeography of East Asia(KLPB) Kunming Institute of BotanyChinese Academy of ScienceKunmingYunnanChina Belozersky Institute of Physicochemical Biology Lomonosov Moscow State UniversityLeninskye Gory1Build.40Moscow 119991Russian Federation Kharkevich Institute for Information Transmission Problems Russian Academy of SciencesMoscow 127051Russian Federation National Collection of Agricultural and Industrial Microorganisms Institute of Food Science and TechnologyHungarian University of Agriculture and Life SciencesSomlóiút 14‑161118 BudapestHungary Instituto de Biociências Universidade Federal de Mato Grosso do SulAvenida Costa e Silvas/n Bairro UniversitárioCampo GrandeMS CEP 79070‑900Brazil Instituto de Pesquisas Ambientais Secretaria do Meio AmbienteInfraestrutura e LogísticaAv.Miguel Stéfano 3687São PauloSP CEP 04301‑902Brazil Departamento de Botânica e Zoologia Universidade Federal do Rio Grande do NorteCampus UniversitárioNatalRN 59078-900Brazil All-Russian Institute of Plant Protection Sh.Podbelskogo 3PushkinSt.Petersburg 196608Russia Research Group Mycology Department of BiologyGhent University9000 GhentBelgium Faculty of Science University of South Bohemia37005ČeskéBudějoviceCzech Republic Department of Ecology and Evolutionary Biology University of Colora

Fungi are one of the most diverse groups of organisms with an estimated number of species in the range of 2–3 *** higher-level ranking of fungi has been discussed in the framework of molecular phylogenetics since Hibbett et al.,and the definition and the higher ranks(e.g.,phyla)of the‘true fungi’have been revised in several subsequent *** accumulation of novel genomic data and the advancements in phylogenetics now facilitate a robust and precise foundation for the higher-level classification within the *** study provides an updated classification of the kingdom Fungi,drawing upon a comprehensive phylogenomic analysis of Holomycota,with which we outline well-supported nodes of the fungal tree and explore more contentious *** accept 19 phyla of Fungi,***,Ascomycota,Basidiobolomycota,Basidiomycota,Blastocladiomycota,Calcarisporiellomycota,Chytridiomycota,Entomophthoromycota,Entorrhizomycota,Glomeromycota,Kickxellomycota,Monoblepharomycota,Mortierellomycota,Mucoromycota,Neocallimastigomycota,Olpidiomycota,Rozellomycota,Sanchytriomycota,and *** the phylogenies,Caulochytriomycota resides in Chytridiomycota;thus,the former is regarded as a synonym of the latter,while Caulochytriomycetes is viewed as a class in *** provide a description of each phylum followed by its classes.A new subphylum,Sanchytriomycotina Karpov is introduced as the only subphylum in *** subclass Pneumocystomycetidae Kirk et *** Pneumocystomycetes,Ascomycota is invalid and thus *** of fossil fungi in phyla and classes are also discussed,providing examples.

关键词： Caulochytriomycota Phylogenomic analyses Pneumocystomycetidae Sanchytriomycotina

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Effect of glass fiber hybridization and radiation treatment to improve the performance of sustainable natural fiber-based hybrid (jute/glass) composites

Next Sustainability

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Next Sustainability 2025年 6卷

作者： S.H. Mahmud S.C. Das A. Saha T. Islam D. Paul M.W. Akram M.S. Jahan M.Z.I. Molla M.A. Gafur R.A. Khan Department of Textile Engineering National Institute of Textile Engineering and Research University of Dhaka Dhaka 1000 Bangladesh Department of Textile Engineering Mawlana Bhashani Science and Technology University Tangail 1902 Bangladesh Institute of Radiation and Polymer Technology Atomic Energy Research Establishment Bangladesh Atomic Energy Commission Savar Dhaka 1349 Bangladesh Department of Manufacturing and Civil Engineering Norwegian University of Science and Technology Gjøvik 2815 Norway Pabna Textile Engineering College Pabna Bangladesh Department of Textile Engineering Jashore University of Science and Technology Jessore 7408 Bangladesh Department of Textiles Merchandising and Interiors University of Georgia Athens GA 30602 USA Department of Textile and Fibre Engineering Indian Institute of Technology Delhi New Delhi India Department of Fashion Design and Apparel Engineering National Institute of Textile Engineering and Research University of Dhaka Dhaka 1000 Bangladesh Department of Material and Metallurgical Engineering Bangladesh University of Engineering and Technology Dhaka Bangladesh Pilot Plant and Process Development Centre (PP & PDC) Bangladesh Council of Scientific and Industrial Research Dhaka 1205 Bangladesh

The current work aims to utilize sustainable natural fibers such as jute fiber in composite materials and a sustainable technology such as gamma (γ) irradiation to further treat the composites for their performance enrichment. First, synthetic glass fibers were hybridized to improve the performance of natural fiber composites (NFCs) with different stacking sequences. Jute fabrics were used as a natural fiber reinforcement and unsaturated polyester resin was employed as a thermoset polymer matrix. Composite laminates were manufactured by compression molding using a heat press machine. After hybridization, the mechanical properties and water resistance were improved compared to the neat NFCs (i.e., jute fiber composites, J0). The tensile strength, bending strength, tensile modulus, bending modulus, and impact strength were improved to 7–56, 5–53, 21–54, 27–69, and 199–387 %, respectively, than the J0. Further, gamma (γ) irradiation (5.0 kGy) was employed as a sustainable and chemical-free technology to treat the hybrid composite materials and improve the performance, and the optimum improvement was revealed for H3 (G 2 J 4 G 2 ) hybrid composites. For H3, the enhancement of tensile, bending and impact strength was revealed at approximately 28, 65 and 27 %, respectively, while the tensile and bending modulus were exhibited at approximately 27 and 71 %, respectively, compared to their non-irradiated composite ones. Further characterization of the composites was studied by FTIR (Fourier Transform Infrared) spectroscopy and SEM (Scanning Electron Microscopy) experimentation.

关键词： Natural fiber composites (NFCs) Hybrid composites Sustainable composites Stacking sequence Thermoset polymer matrix Gamma (γ) irradiation

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Fungal diversity notes 1611-1716: taxonomic and phylogenetic contributions on fungal genera and species emphasis in south China

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Fungal Diversity 2023年第5期122卷 161-403页

作者： Indunil C.Senanayake Walter Rossi Marco Leonardi Alex Weir Mark McHugh Kunhiraman C.Rajeshkumar Rajnish K.Verma Samantha C.Karunarathna Saowaluck Tibpromma Nikhil Ashtekar Sreejith K.Ashtamoorthy Sanjay Raveendran Gurmeet Kour Aishwarya Singh Saúl De la Peña-Lastra Antonio Mateos Miroslav Kolařík Vladimír Antonín HanaŠevčíková Fernando Esteve-Raventós Ellen Larsson Fermín Pancorbo Gabriel Moreno Alberto Altés Yolanda Turégano Tian-Ye Du Li Lu Qi-Rui Li Ji-Chuan Kang Sugantha Gunaseelan Kezhocuyi Kezo Malarvizhi Kaliyaperumal Jizhen Fu Milan C.Samarakoon Yusufjon Gafforov Shakhnoza Teshaboeva Pradeep C.Kunjan Arya Chamaparambath Adam Flakus Javier Etayo Pamela Rodriguez-Flakus Mikhail P.Zhurbenko Nimali Ide Silva Danushka S.Tennakoon KPDeepna Latha Patinjareveettil Manimohan KNAnil Raj Mark S.Calabon Abdollah Ahmadpour Zeinab Heidarian Zahra Alavi Fatemeh Alavi Youbert Ghosta Razmig Azizi Mei Luo Min-Ping Zhao Nuwan D.Kularathnage Li Hua Yun-Hui Yang Chun-Fang Liao Hai-Jun Zhao Anis S.Lestari Subashini C.Jayasiri Feng-Ming Yu Lei Lei Jian-Wei Liu Omid Karimi Song-Ming Tang Ya-Ru Sun Yong Wang Ming Zeng Zin H.Htet Benedetto T.Linaldeddu Artur Alves Alan J.L.Phillips Carlo Bregant Lucio Montecchio AndréDe Kesel Vincent P.Hustad Andrew N.Miller Anna G.Fedosova Viktor Kučera Mubashar Raza Muzammil Hussain Yan-Peng Chen Vinodhini Thiyagaraja Deecksha Gomdola Achala R.Rathnayaka Asha J.Dissanayake Nakarin Suwannarach Sinang Hongsanan Sajeewa S.N.Maharachchikumbura Lakmali S.Dissanayake Nalin N.Wijayawardene Rungtiwa Phookamsak Saisamorn Lumyong E.B.Gareth Jones Neelamanie Yapa Dhanushka N.Wanasinghe Ning Xie Mingkwan Doilom Ishara S.Manawasinghe Jian-Kui(Jack)Liu Qi Zhao Biao Xu Kevin D.Hyde Jiage Song Innovative Institute for Plant Health/Key Laboratory of Green Prevention and Control On Fruits and Vegetables in South China Ministry of Agriculture and Rural AffairsZhongkai University of Agriculture and EngineeringHaizhu DistrictGuangzhou 510225GuangdongChina Center of Excellence in Fungal Research Mae Fah Luang UniversityChiang Rai 57100Thailand Guangdong Provincial Key Laboratory for Plant Epigenetics College of Life Science and OceanographyShenzhen University3688Nanhai AvenueNanshanShenzhen 518055GuangdongChina Sect.Environmental Sciences Department MeSVAUniversity of L’AquilaVia Vetoio67100 CoppitoAQItaly Department of Environmental Biology SUNY-ESF241 Illick Hall1 Forestry DriveSyracuseNY 13210USA National Fungal Culture Collection of India MACS Agharkar Research InstitutePuneMaharashtra 411004India Department of Plant Pathology Punjab Agricultural UniversityLudhianaPunjab 141004India Center for Yunnan Plateau Biological Resources Protection and Utilization College of Biological Resource and Food EngineeringQujing Normal UniversityQujing 655011YunnanChina Department of Forest Ecology Kerala Forest Research InstitutePeechiThrissurKerala 680653India Department of Botany The American CollegeTallakkulamMaduraiTamil Nadu 625002India Department of Zoology Savitribai Phule Pune UniversityGaneshkhind RdGaneshkhindPuneMaharashtra 411007India University of Santiago de Compostela 15782 Santiago de CompostelaSpain Sociedad Micológica Extremeña C/Sagitario 1410001 CáceresSpain Institute of Microbiology of the Czech Academy of Sciences Vídeňská108314220 Prague 4Czech Republic Department of Botany Moravian MuseumZelnýtrh 665937 BrnoCzech Republic Department of Life Sciences(Botany Unit) University of Alcalá28805 Alcaláde HenaresMadridSpain Biological and Enviromental Sciences University of Gothemburgand Gothemburg Global Biodiversity CentreBox 46140530 GöteborgSweden Madrid Mycological Society Real Jardín BotánicoC/Claudio Moyano 128014 MadridSpain State Ke

This article is the 15th contribution in the Fungal Diversity Notes series,wherein 115 taxa from three phyla,nine classes,28 orders,48 families,and 64 genera are *** taxa described and illustrated in the present study include a new family,five new genera,61 new species,five new combinations,one synonym,one new variety and 31 records on new hosts or new geographical *** *** introduced and accommodated in *** new genera introduced in this study are Ageratinicola,Kevinia,Pseudomultiseptospora(Parabambusicolaceae),Marasmiellomycena,and Vizzinia(Porotheleaceae).Newly described species are Abrothallus altoandinus,Ageratinicola kunmingensis,Allocryptovalsa aceris,Allophoma yuccae,Apiospora cannae,***,***,Boeremia wisteriae,Calycina papaeana,Clypeo-coccum lichenostigmoides,Coniochaeta riskali-shoyakubovii,Cryphonectria kunmingensis,Diaporthe angustiapiculata,***,***,Diatrypella guangdongense,Dothiorella franceschinii,Endocalyx phoenicis,Epicoc-cum terminosporum,Fulvifomes karaiensis,***,Ganoderma ghatensis,Hysterobrevium baoshanense,Inocybe avellaneorosea,***,Jahnula oblonga,Kevinia lignicola,Kirschsteiniothelia guangdongensis,Laboulbenia caprina,***,***,***,***,***,***,***,***,Laccaria rubriporus,Lasiodiplodia morindae,Lyophyllum agnijum,Marasmiellomycena pseudoomphaliiformis,Melomastia beihaiensis,Nemania guangdongensis,Nigrograna thailandica,Nigrospora ficuum,Oxydothis chinensis,***,Petriella thailandica,Phaeoacremonium chinensis,Phialocephala chinensis,Phytophthora debattistii,Polyplosphaeria nigrospora,Pronectria loweniae,Seriascoma acutispora,Setoseptoria bambusae,Stictis anomianthi,Tarzetta tibetensis,Tarzetta urceolata,Tetraploa obpyriformis,Trichoglossum beninense,and Tricoderma *** provide an emendation for Urnula ailaoshanensis Agaricus duplocingulatoides *** i

关键词： Agaricomycetes Ascomycota Basidiomycota Dothideomycetes Eurotiomycetes Fungal diversity Geoglossomycetes Geographical distribution Host records Incertae sedis Laboulbeniomycetes Lecanoromycetes Leotiomycetes Novel taxa New combination Oomycota Peronosporea Pezizomycetes Phylogeny Sordariomycetes South Chinese fungi Taxonomy

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Plant-mediated green synthesis and characterization of silver nanoparticles using Phyllanthus emblica fruit extract

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Materials Today: Proceedings 2021年 42卷 1867-1871页

作者： Sajib Aninda Dhar Rashedul Alam Chowdhury Shaon Das Md. Khalid Nahian Dipa Islam Md. Abdul Gafur Pilot Plant and Process Development Centre (PP & PDC) Bangladesh Council of Scientific and Industrial Research Dr. Qudrat I Khuda Road Dhaka 1205 Bangladesh Department of Materials and Metallurgical Engineering Bangladesh University of Engineering and Technology Zahir Raihan Road Dhaka 1000 Bangladesh Nuclear Safety and Security Division Bangladesh Atomic Energy Regulatory Authority (BAERA) E-12/A Shahid Shahabuddin Shorok Dhaka 1207 Bangladesh Biomedical and Toxicological Research Institute (BTRI) Bangladesh Council of Scientific and Industrial Research Dr. Qudrat I Khuda Road Dhaka 1205 Bangladesh

A cost-effective and non-hazardous approach was carried out for the plant-mediated green synthesis of metallic nanomaterials utilizing the fruit extract of Indian gooseberry (Amla) or Phyllanthus emblica . In this study, silver nanoparticles were effectively synthesized from silver nitrate precursors through a facile and eco-friendly method using the fruit extract of Phyllanthus emblica as a reducing and stabilizing agent. The ultraviolet–visible (UV–Vis) spectroscopy, x-ray diffraction analysis, field emission scanning electron microscopy (FESEM), and energy dispersive x-ray analysis (EDX) were employed to characterize the synthesized nanoparticles. A face-centered cubic crystalline structure and elemental silver phase were identified by x-ray diffraction analysis. The Rietveld refinement determined the average crystallite size (Lvol-IB) of the silver nanoparticles’ as 16.29 nm. The microstructural analysis revealed the spherical shape of the as-synthesized silver nanoparticles and the average grain size ranged between 60 and 80 nm. The development of elemental silver was affirmed by the EDX spectrum. The bio-reduction of silver ions and the formation of silver nanoparticles were ascertained by the UV–Vis spectral analysis. A surface plasmon resonance peak was found at 453 nm. The well-balanced size and shape of the synthesized elemental silver nanoparticles suggested the Phyllanthus emblica fruit extract as an effective reducing agent.

关键词： Green synthesis Silver nanoparticle Phyllanthus emblica Fruit extract

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microbial electrochemistry for bioremediation

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Environmental Science and Ecotechnology 2020年第1期1卷 85-91页

作者： Xiaofei Wang Federico Aulenta Sebastia Puig Abraham Esteve-Nunez Yujie He Yang Mu Korneel Rabaey Center for Microbial Ecology and Technology(CMET) Ghent UniversityCoupure Links 6539000GhentBelgium Centre for Advanced Process Technology for Urban Resource Recovery(CAPTURE) Ghent UniversityBelgium Water Research Institute(IRSA) National Research Council(CNR)Via Salaria Km 2930000015MonterotondoRMItaly LEQUiA.Institute of the Environment University of GironaCampus Montilivi.C/Maria Aurelia Capmany69E-17003GironaCataloniaSpain Department of Analytical Chemistry and Chemical Engineering University of AlcalaCampus UniversitarioCtra.Madrid-Barcelona Km 33.60028871Alcala de HenaresSpain State Key Laboratory of Pollution Control and Resource Reuse(SKL-PCRR) School of the EnvironmentNanjing UniversityXianlin Avenue 163Nanjing210023China Department of Applied Chemistry School of Chemistry and Materials ScienceUniversity of Science and Technology of ChinaHefeiAnhui230026China

Lack of suitable electron donors or acceptors is in many cases the key reason for pollutants to persist in the *** supplementation of electron donors or acceptors is often difficult to control and/or involves chemical additions with limited lifespan,residue formation or other adverse side *** electrochemistry has evolved very fast in the past years–this field relates to the study of electrochemical interactions between microorganisms and solid-state electron donors or *** can be supplied in such so-called bioelectrochemical systems(BESs)at low voltage to provide or extract electrons in a very precise manner.A plethora of metabolisms can be linked to electrical current now,from metals reductions to denitrification and *** this perspective,we provide an overview of the emerging applications of BES and derived technologies towards the bioremediation field and outline how this approach can be game changing.

关键词： electrochemistry precise residue

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Combustion characterization of benzene-doped, hydrogen-rich coke oven gas surrogate mixtures: H 2 /CH 4 /CO/N 2 /CO 2

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Fuel processing technology 2025年 276卷

作者： Marianna Cafiero M. Mustafa Kamal Saurabh Sharma Phuc Danh Nguyen Milena Nowakowska Axel Coussement Alessandro Parente RWTH Aachen University Institute for Combustion Technology Templergraben 64 52056 Aachen Germany Université Libre de Bruxelles Ecole Polytechnique de Bruxelles Aero-Thermo-Mechanical Laboratory Avenue F.D. Roosevelt 50 1050 Brussels Belgium Université Libre de Bruxelles and Vrije Universiteit Brussel Brussels Institute for Thermal-fluid systems and clean Energy (BRITE) Group Brussels Belgium Department of Mechanical and Industrial Engineering Indian Institute of Technology Roorkee 247667 India ArcelorMittal Global Research and Development Maizières Process Voie Romaine BP 30320 Maizières-lès-Metz Cedex F-57283 France Centre de Pyrolyse de Marienau Parc d'activités Forbach Ouest Forbach 57600 France WEL Research Institute Avenue Pasteur 6 Wavre 1300 Belgium

This experimental study investigates the effects of benzene doping on the combustion and emission characteristics of hydrogen-rich, coke oven gas (COG) surrogate mixture, H 2 /CH 4 /CO/N 2 /CO 2 , to be called hereafter as COGb to distinguish it from and compare it with a different coke oven surrogate mixture, H 2 /CH 4 /CO, to be called hereafter as COGa. Unlike COGa mixture that includes only the major components of the industrial-grade coke oven gas composition, COGb also considers the minor components for the sake of a comprehensive understanding of the chemical and physical phenomena occurring at an industrial scale when burning coke oven gas mixtures. The purpose of benzene (C 6 H 6 ) – as representative of benzol (BTX) – doping of the COG mixtures is to investigate the direct and indirect impact of aromatic compounds on NO x formation during the hydrogen-rich combustion process. Different levels of benzene (C 6 H 6 ) doping (up to 5 % v/v) of industrial-grade, H 2 -rich COGb flames in a semi-industrial scale furnace under varying stoichiometric conditions allowed for collecting extensive data on temperature, exhaust emission, and chemiluminescence signature of important chemical radical species including OH ⁎ and CH ⁎ . The results highlight a benzene-driven, three-way interaction between flame temperature, NO formation, and soot inception in the coke oven gas flames.

关键词： Hydrogen-rich fuels Nitrogen oxides (NO x ) Aromatic doping Flame temperature Semi-industrial combustion furnace Sooty flames Coke oven gas (COG)

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Genomic investigations of unexplained acute hepatitis in children

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Nature 2023年第7961期617卷 564-573页

作者： Morfopoulou, Sofia Buddle, Sarah Torres Montaguth, Oscar Enrique Atkinson, Laura Guerra-Assunção, José Afonso Moradi Marjaneh, Mahdi Zennezini Chiozzi, Riccardo Storey, Nathaniel Campos, Luis Hutchinson, J. Ciaran Counsell, John R. Pollara, Gabriele Roy, Sunando Venturini, Cristina Antinao Diaz, Juan F. Siam, Ala’a Tappouni, Luke J. Asgarian, Zeinab Ng, Joanne Hanlon, Killian S. Lennon, Alexander McArdle, Andrew Czap, Agata Rosenheim, Joshua Andrade, Catarina Anderson, Glenn Lee, Jack C. D. Williams, Rachel Williams, Charlotte A. Tutill, Helena Bayzid, Nadua Martin Bernal, Luz Marina Macpherson, Hannah Montgomery, Kylie-Ann Moore, Catherine Templeton, Kate Neill, Claire Holden, Matt Gunson, Rory Shepherd, Samantha J. Shah, Priyen Cooray, Samantha Voice, Marie Steele, Michael Fink, Colin Whittaker, Thomas E. Santilli, Giorgia Gissen, Paul Kaufer, Benedikt B. Reich, Jana Andreani, Julien Simmonds, Peter Alrabiah, Dimah K. Castellano, Sergi Chikowore, Primrose Odam, Miranda Rampling, Tommy Houlihan, Catherine Hoschler, Katja Talts, Tiina Celma, Cristina Gonzalez, Suam Gallagher, Eileen Simmons, Ruth Watson, Conall Mandal, Sema Zambon, Maria Chand, Meera Hatcher, James De, Surjo Baillie, Kenneth Semple, Malcolm Gracie Bellos, Evangelos Broderick, Claire Channon-Wells, Samuel De, Tisham D’Souza, Giselle Elorrieta, Leire Estramiana Estrada-Rivadeneyra, Diego Galassini, Rachel Habgood-Coote, Dominic Hamilton, Shea Jackson, Heather Kavanagh, James Marjaneh, Mahdi Moradi Menikou, Stephanie Nichols, Samuel Nijman, Ruud Patel, Harsita Pennisi, Ivana Powell, Oliver Reid, Ruth Vito, Ortensia Whittaker, Elizabeth Wilson, Clare Womersley, Rebecca Abdulla, Amina Darnell, Sarah Mustafa, Sobia Georgiou, Pantelis Manzano, Jesus-Rodriguez Moser, Nicolas Carter, Michael Tibby, Shane Cohen, Jonathan Davis, Francesca Kenny, Julia Wellman, Paul White, Marie Fish, Matthew Jennings, Aislinn Shankar-Hari Fidler, Katy Agranoff, Dan Richmond, Vivien Seal, Matthew Faust, Saul Owen, Dan Ensom, Ruth McKay, Sarah Mondo, Diana Shaji, Mariya Schra Infection Immunity and Inflammation Department Great Ormond Street Institute of Child Health University College London London United Kingdom Section for Paediatrics Department of Infectious Diseases Faculty of Medicine Imperial College London London United Kingdom Department of Microbiology Virology and Infection Control Great Ormond Street Hospital for Children NHS Foundation Trust London United Kingdom Section of Virology Department of Infectious Diseases Faculty of Medicine Imperial College London London United Kingdom University College London Mass Spectrometry Science Technology Platform Division of Biosciences University College London London United Kingdom Histopathology Department Great Ormond Street Hospital for Children NHS Foundation Trust London United Kingdom Research Department of Targeted Intervention Division of Surgery and Interventional Science University College London London United Kingdom Division of Infection and Immunity University College London London United Kingdom Gene Transfer Technology Group EGA-Institute for Women’s Health University College London London United Kingdom Genetics and Genomic Medicine Department Great Ormond Street Institute of Child Health University College London London United Kingdom Department of Neurodegenerative Disease Queen Square Institute of Neurology University College London London United Kingdom Wales Specialist Virology Centre Public Health Wales Microbiology Cardiff University Hospital of Wales Cardiff United Kingdom Department of Medical Microbiology Edinburgh Royal Infirmary Edinburgh United Kingdom Public Health Agency Northern Ireland Belfast United Kingdom School of Medicine University of St. Andrews St. Andrews United Kingdom Public Health Scotland Edinburgh United Kingdom West of Scotland Specialist Virology Centre Glasgow United Kingdom Micropathology Ltd University of Warwick Science Park Coventry United Kingdom Molecular and Cellular Immunology Great Ormond Street Institute of C

Since its first identification in Scotland, over 1,000 cases of unexplained paediatric hepatitis in children have been reported worldwide, including 278 cases in the UK1. Here we report an investigation of 38 cases, 6... 详细信息

Since its first identification in Scotland, over 1,000 cases of unexplained paediatric hepatitis in children have been reported worldwide, including 278 cases in the UK¹. Here we report an investigation of 38 cases, 66 age-matched immunocompetent controls and 21 immunocompromised comparator participants, using a combination of genomic, transcriptomic, proteomic and immunohistochemical methods. We detected high levels of adeno-associated virus 2 (AAV2) DNA in the liver, blood, plasma or stool from 27 of 28 cases. We found low levels of adenovirus (HAdV) and human herpesvirus 6B (HHV-6B) in 23 of 31 and 16 of 23, respectively, of the cases tested. By contrast, AAV2 was infrequently detected and at low titre in the blood or the liver from control children with HAdV, even when profoundly immunosuppressed. AAV2, HAdV and HHV-6 phylogeny excluded the emergence of novel strains in cases. Histological analyses of explanted livers showed enrichment for T cells and B lineage cells. Proteomic comparison of liver tissue from cases and healthy controls identified increased expression of HLA class 2, immunoglobulin variable regions and complement proteins. HAdV and AAV2 proteins were not detected in the livers. Instead, we identified AAV2 DNA complexes reflecting both HAdV-mediated and HHV-6B-mediated replication. We hypothesize that high levels of abnormal AAV2 replication products aided by HAdV and, in severe cases, HHV-6B may have triggered immune-mediated hepatic disease in genetically and immunologically predisposed children. © 2023, The Author(s).

关键词： Clinical microbiology Paediatric research

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Mineralogy of rare metal mineralization from Abu Rusheid granitic gneisses and surrounding stream sediments, South Eastern Desert, Egypt

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World of Mining - Surface and Underground 2020年第4期72卷 211-219页

作者： Raslan, Mohamed F. El-Sayed Seleman, Mohamed M. Omran, Mamdouh Z. El-Kheshen, Amany A. Shoeir, Rasha H. Nuclear Materials Authority Cairo Egypt Suez University P.O. Box 43518 Suez Egypt Metallurglcal and Materials Engineering Department Faculty of Petroleum and Mining Engineering Suez University Al-Salam 1 P.O. Box 43518 Suez Egypt Process Metallurgy Research Group Faculty of Technology University of Oulu Finland Mineral Processing and Agglomeration Lab Central Metallurgical Research and Development Institute Cairo Egypt Glass Research Department National Research Centre Dokki Cairo12622 Egypt

A large assemblage of precious rare-metal mineralization is detected in both the granitic gneiss and its surrounding stream sediments of Abu Rusheid locality, Southern Eastern Desert of Egypt. XRF analyses of the bulk samples indicated that both granitic gneiss and stream sediment samples are enriched in Zr, Nb, and Y. The average content of Zr, Nb, and Y are 3444 ppm, 1079 ppm and 251 ppm for granitic gneiss samples however;they are 1775 ppm, 3335 ppm and 265 ppm for the stream sediments samples respectively. Detailed microscopic examination, X-ray diffraction (XRD) and Scanning Electron Microscope (SEM) were used to characterize the studied minerals. The analyses of several separated grains using SEM and XRD revealed the presence of zircon, Nb-Ta oxide minerals (columbite, ishikawaite, betafite, and fergusonite), uranophane, uranothorite, cassiterite, monazite, rutile, and ilmenite. Besides, native gold, nickel, and mineralization of Bl, Pb, Cu, Zn, Fe, and Cr were detected in the granitic gneiss samples. Based on the results so far, it can be stated that the studied granitic gneiss and its associated stream sediments contain anomalous potentiality for U, Th, Nb, Ta, Zr, Hf, and rare earth elements (REEs). Zircon of the investigated gneiss and stream sediments contains high hafnium content ranging between 2.72 and 5.74 %. This revealed that the studied zircon was assigned as Hf-rich zircon. © 2020 GDMB Gesellschaft fur Bergbau, Metallurgie, Rohstoff- und Umwelttechnik e.V.. All rights reserved.

关键词： Zircon

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Corrigendum to "engineering interventions in enzyme production: Lab to industrial scale" [Bioresour. Technol. 326 (2021) 124771]

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Bioresource technology 2022年 361卷 127770页

作者： Ayon Tarafdar Ranjna Sirohi Vivek Kumar Gaur Sunil Kumar Poonam Sharma Sunita Varjani Hari Om Pandey Raveendran Sindhu Aravind Madhavan Reshmy Rajasekharan Sang Jun Sim Divison of Livestock Production and Management ICAR-Indian Veterinary Research Institute Izatnagar Bareilly 243 122 India. Centre for Energy and Environmental Sustainability Lucknow 226 029 India Technology Development Centre CSIR-National Environmental Engineering Research Institute Nagpur 440 020 India Department of Chemical & Biological Engineering Korea University Seoul 136713 Republic of Korea. Environmental Biotechnology Division Environmental Toxicology Group CSIR-Indian Institute of Toxicology Research Lucknow 226 001 India. Technology Development Centre CSIR-National Environmental Engineering Research Institute Nagpur 440 020 India. Department of Bioengineering Integral University Lucknow 226 029 India. Gujarat Pollution Control Board Gandhinagar 382 010 Gujarat India. Microbial Processes and Technology Division CSIR-National Institute for Interdisciplinary Science and Technology Thiruvananthapuram 695 019 India. Rajiv Gandhi Centre for Biotechnology Trivandrum 695 014 India. Department of Chemistry Bishop Moore College Mavelikkara 690 110 India. Department of Chemical & Biological Engineering Korea University Seoul 136713 Republic of Korea. Electronic address: simsj@korea.ac.kr.

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DeePMD-kit v2: A software package for Deep Potential models

arXiv

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arXiv 2023年

作者： Zeng, Jinzhe Zhang, Duo Lu, Denghui Mo, Pinghui Li, Zeyu Chen, Yixiao Rynik, Marián Huang, Li'ang Li, Ziyao Shi, Shaochen Wang, Yingze Ye, Haotian Tuo, Ping Yang, Jiabin Ding, Ye Li, Yifan Tisi, Davide Zeng, Qiyu Bao, Han Xia, Yu Huang, Jiameng Muraoka, Koki Wang, Yibo Chang, Junhan Yuan, Fengbo Bore, Sigbjørn Løland Cai, Chun Lin, Yinnian Wang, Bo Xu, Jiayan Zhu, Jia-Xin Luo, Chenxing Zhang, Yuzhi Goodall, Rhys E.A. Liang, Wenshuo Singh, Anurag Kumar Yao, Sikai Zhang, Jingchao Wentzcovitch, Renata Han, Jiequn Liu, Jie Jia, Weile York, Darrin M. Weinan, E. Car, Roberto Zhang, Linfeng Wang, Han Laboratory for Biomolecular Simulation Research Institute for Quantitative Biomedicine Department of Chemistry and Chemical Biology Rutgers University PiscatawayNJ08854 United States AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China HEDPS CAPT College of Engineering Peking University Beijing100871 China College of Electrical and Information Engineering Hunan University Changsha China Yuanpei College Peking University Beijing100871 China Program in Applied and Computational Mathematics Princeton University PrincetonNJ08540 United States Department of Experimental Physics Comenius University Mlynská Dolina F2 Bratislava842 48 Slovakia Center for Quantum Information Institute for Interdisciplinary Information Sciences Tsinghua University Beijing100084 China Center for Data Science Peking University Beijing100871 China ByteDance Research Zhonghang Plaza No. 43 North 3rd Ring West Road Haidian District Beijing China College of Chemistry and Molecular Engineering Peking University Beijing100871 China Baidu Inc. Beijing China Key Laboratory of Structural Biology of Zhejiang Province School of Life Sciences Westlake University Zhejiang Hangzhou China Westlake AI Therapeutics Lab Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Hangzhou China Department of Chemistry Princeton University PrincetonNJ08544 United States SISSA Scuola Internazionale Superiore di Studi Avanzati Trieste34136 Italy Laboratory of Computational Science and Modeling Institute of Materials École Polytechnique Fédérale de Lausanne Lausanne1015 Switzerland Department of Physics National University of Defense Technology Hunan Changsha410073 China State Key Lab of Processors Institute of Computing Technology Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China School of Electronics Engineerin

DeePMD-kit is a powerful open-source software package that facilitates molecular dynamics simulations using machine learning potentials (MLP) known as Deep Potential (DP) models. This package, which was released in 2017, has been widely used in the fields of physics, chemistry, biology, and material science for studying atomistic systems. The current version of DeePMD-kit offers numerous advanced features such as DeepPot-SE, attention-based and hybrid descriptors, the ability to fit tensile properties, type embedding, model deviation, Deep Potential - Range Correction (DPRc), Deep Potential Long Range (DPLR), GPU support for customized operators, model compression, non-von Neumann molecular dynamics (NVNMD), and improved usability, including documentation, compiled binary packages, graphical user interfaces (GUI), and application programming interfaces (API). This article presents an overview of the current major version of the DeePMD-kit package, highlighting its features and technical details. Additionally, the article benchmarks the accuracy and efficiency of different models and discusses ongoing developments. © 2023, CC BY-NC-ND.

关键词： Molecular dynamics

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