检索结果-内蒙古大学图书馆

Convolutional Neural Networks for Scops Owl Sound Classification

Procedia Computer Science 2021年 179卷 81-87页

作者： Alam Ahmad Hidayat Tjeng Wawan Cenggoro Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

Adopting a deep learning model into bird sound classification tasks becomes a common practice in order to construct a robust automated bird sound detection system. In this paper, we employ a four-layer Convolutional Neural Network (CNN) formulated to classify different species of Indonesia scops owls based on their vocal sounds. Two widely used representations of an acoustic signal: log-scaled mel-spectrogram and Mel Frequency Cepstral Coefficient (MFCC) are extracted from each sound file and fed into the network separately to compare the model performance with different inputs. A more complex CNN that can simultaneously process the two extracted acoustic representations is proposed to provide a direct comparison with the baseline model. The dual-input network is the well-performing model in our experiment that achieves 97.55% Mean Average Precision (MAP). Meanwhile, the baseline model achieves a MAP score of 94.36% for the mel-spectrogram input and 96.08% for the MFCC input.

关键词： acoustic features bird sound classification convolutional neural network mean average precision scops owl

来源：评论

学校读者我要写书评

暂无评论

Systematic Evaluation of Cross Population Polygenic Risk Score on Colorectal Cancer

引用

Procedia Computer Science 2021年 179卷 344-351页

作者： Bharuno Mahesworo Arif Budiarto Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

The number of findings in cancer genomics research has grown rapidly in the last decade due to the decline in the cost of human sequencing and genotyping. However, the majority of the reported significant marker associated with cancer traits are based on European and East Asian population. Large population such as South Asian and South-East Asian population are under-represented in genomics research. In this study, we explored the possibility of computing a Polygenic Risk Score (PRS) of colorectal cancer on our test sample based on reported significant Single Nucleotide Polymorphism (SNP). The SNPs used to compute the risk score were collected from GWAS Central and GWAS Catalog. Significant SNPs from IC3 study were used as a benchmark. The result shows that calculating colorectal cancer risk score using reported significant marker from different population group is possible. The p-value of our statistic model shows significant differences between case and control group risk score.

关键词： Polygenic Risk Score Cross Population Colorectal Cancer

来源：评论

学校读者我要写书评

暂无评论

Mrf-Former: A Multi-Scale Resolution Fusion Approach for Addressing Scale Discrepancies in Remote Sensing Image Change Detection

SSRN

引用

SSRN 2024年

作者： Yang, Hualin Ouyang, Jiarui Cheng, Junhao Zhang, Wen Li, Hui Li, Xiying Chen, Calvin Yu-Chian Artificial Intelligence Medical Research Center School of Intelligent Systems Engineering Shenzhen Campus of Sun Yat-sen University Guangdong Shenzhen518107 China - Preferred Program Peking University Shenzhen Graduate School Guangdong Shenzhen518055 China School of Electronic and Computer Engineering Peking University Shenzhen Graduate School Guangdong Shenzhen518055 China Department of Medical Research China Medical University Hospital Taichung40447 Taiwan Department of Bioinformatics and Medical Engineering Asia University Taichung41354 Taiwan Guangdong Provincial Key Laboratory of Intelligent Transportation System Sun Yat-sen University Guangzhou China School of Intelligent Systems Engineering Sun Yat-sen University Guangdong Shenzhen518107 China Institute of Artificial Intelligence Guangzhou University Guangzhou China

Dealing with resolution variations in dual-temporal remote sensing images is challenging due to differences in sensor capabilities, altitudes, footprints, resampling, and data fusion. Conventional methods for different-resolution change detection struggle to effectively address these challenges, primarily due to insufficient consideration of global and local feature interactions. In this paper, we propose a novel change detection model that leverages the power of multi-scale resolution fusion(MRF). By incorporating the MRF-Block, our approach extracts hierarchical multi-scale features from the input data, enabling effective capture of contextual information at various granularities. This facilitates improved handling of resolution disparities and promotes interactions between global and local features. Experimental evaluations conducted on diverse datasets, demonstrate the effectiveness of our proposed model in achieving accurate change detection in dual-temporal remote sensing imagery, even in scenarios characterized by varying resolutions. Code is available on-line at https://***/yanghl1914/MRF-Former. © 2024, The Authors. All rights reserved.

关键词： Remote sensing

来源：评论

学校读者我要写书评

暂无评论

Accuracy Enhancement of L-Band EPR Tooth Dosimetry by Implementing Multiple Harmonic Detection

SSRN

引用

SSRN 2024年

作者： Oh, Jeonghun Koo, Chang Uk Park, Jong In Choi, Kwon Lee, Junyoung Hirata, Hiroshi Ye, Sung-Joon Program in Biomedical Radiation Sciences Graduate School of Convergence Science and Technology Seoul National University Seoul08826 Korea Republic of Ionizing Radiation Metrology Group Korea Research Institute of Standards and Science Daejeon34113 Korea Republic of Research Institute for Convergence Science Seoul National University Seoul08826 Korea Republic of Division of Bioengineering and Bioinformatics Faculty of Information Science and Technology Hokkaido University Sapporo060–0814 Japan Department of Applied Bioengineering Graduate School of Convergence Science and Technology Seoul National University Seoul08826 Korea Republic of Advanced Institute of Convergence Technology Seoul National University Suwon16629 Korea Republic of Biomedical Research Institute Seoul National University Hospital Seoul03080 Korea Republic of

In a large-scale radiation accident, the swift classification of individuals exposed to high levels of radiation is crucial to minimize casualties. In-vivo tooth dosimetry using L-band electron paramagnetic resonance (EPR) spectroscopy is a promising method for this purpose, as it can estimate individual exposure levels rapidly and non-invasively. However, the accuracy of dose estimation associated with this technique remains a great challenge. To enhance the accuracy, digital multiple harmonic detection (MHD) was incorporated into a home-built L-band EPR spectrometer. This approach enabled the utilization of information present in higher harmonics of EPR signals, which has been often discarded in traditional EPR spectroscopy. Acquired multiple harmonic spectra were reconstructed to the first derivative spectrum to merge information and mitigate the signal broadening. The modulation amplitude varied in a range of 0.3 to 0.7 mT to maximize the accuracy. In a 0.5-minute measurement at 0.6 mT, the standard error of inverse prediction (SEIP) was reduced to 0.57 Gy from 0.71 Gy. The statistical significancy of the enhancement was validated. In conclusion, the accuracy enhanced by this MHD can contribute to improving the efficiency of triage systems in the aftermath of a mass radiation accident. © 2024, The Authors. All rights reserved.

关键词： Paramagnetic resonance

来源：评论

学校读者我要写书评

暂无评论

Gene knockout inference with variational graph autoencoder learning single-cell gene regulatory networks

引用

Nucleic acids research 2023年第13期51卷 6578-6592页

作者： Yongjian Yang Guanxun Li Yan Zhong Qian Xu Bo-Jia Chen Yu-Te Lin Robert S Chapkin James J Cai Department of Electrical and Computer Engineering Texas A&M University College Station TX 77843 USA. Department of Statistics Texas A&M University College Station TX 77843 USA. Key Laboratory of Advanced Theory and Application in Statistics and Data Science-MOE School of Statistics East China Normal University 3663 North Zhongshan Road Shanghai 200062 China. Department of Veterinary Integrative Biosciences Texas A&M University College Station TX 77843 USA. Graduate Institute of Microbiology and Public Health College of Veterinary Medicine National Chung Hsing University Taichung 402 Taiwan. Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan. Program in Integrative & Complex Diseases Department of Nutrition Texas A&M University College Station TX 77843 USA. Interdisciplinary Program of Genetics Texas A&M University College Station TX 77843 USA.

In this paper, we introduce Gene Knockout Inference (GenKI), a virtual knockout (KO) tool for gene function prediction using single-cell RNA sequencing (scRNA-seq) data in the absence of KO samples when only wild-type (WT) samples are available. Without using any information from real KO samples, GenKI is designed to capture shifting patterns in gene regulation caused by the KO perturbation in an unsupervised manner and provide a robust and scalable framework for gene function studies. To achieve this goal, GenKI adapts a variational graph autoencoder (VGAE) model to learn latent representations of genes and interactions between genes from the input WT scRNA-seq data and a derived single-cell gene regulatory network (scGRN). The virtual KO data is then generated by computationally removing all edges of the KO gene-the gene to be knocked out for functional study-from the scGRN. The differences between WT and virtual KO data are discerned by using their corresponding latent parameters derived from the trained VGAE model. Our simulations show that GenKI accurately approximates the perturbation profiles upon gene KO and outperforms the state-of-the-art under a series of evaluation conditions. Using publicly available scRNA-seq data sets, we demonstrate that GenKI recapitulates discoveries of real-animal KO experiments and accurately predicts cell type-specific functions of KO genes. Thus, GenKI provides an in-silico alternative to KO experiments that may partially replace the need for genetically modified animals or other genetically perturbed systems.

关键词：

来源：评论

学校读者我要写书评

暂无评论

Meteorological parameters for PV installations in Indonesia

引用

AIP Conference Proceedings 2024年第1期3026卷

作者： Joko Pebrianto Trinugroho Alam Ahmad Hidayat Reza Rahutomo Bens Pardamean Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Information System Department School of Information Systems Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

Many countries are still dependent on fossil fuels as their primary energy supply. However, there is a growing concern about the sustainability and the environmental issue of fossil fuels. Therefore, it is important to utilize renewable resources as the energy supply, such as solar energy. As a country with a tropical climate, Indonesia has a great potential to use solar energy, due to the abundance of sunlight exposure. The present study aims to analyze several meteorological parameters for the installation of photovoltaic (PV) technology in Jakarta, Indonesia. The meteorological data provided by the Ministry of Environment and Forestry, Indonesia from 2008-2021 were used at three different locations in Jakarta. Data visualizations were used to show the difference between each variable in different locations. In addition, the statistical difference between the variables in the three locations was also examined using the Mann-Whitney U test. The test shows that all parameters are evenly distributed in the three locations except for a moderate difference in air temperature in the two locations. Furthermore, the monthly analysis of the parameters also indicates that the dry season, especially from August to September, would be the optimal time to utilize PV technology. Hence, this study would be useful to give preliminary insight regarding a site-specified assessment of PV plants in Jakarta based on local meteorological data.

关键词：

来源：评论

学校读者我要写书评

暂无评论

Characterizing the mechanical response of metallic glasses to uniaxial tension using a spring network model

arXiv

引用

arXiv 2023年

作者： Nawano, Aya Schroers, Jan Shattuck, Mark D. O’Hern, Corey S. Department of Mechanical Engineering and Materials Science Yale University New HavenCT06520 United States Benjamin Levich Institute and Physics Department The City College of New York New YorkNY10031 United States Department of Physics Yale University New HavenCT06520 United States Department of Applied Physics Yale University New HavenCT06520 United States Graduate Program in Computational Biology and Bioinformatics Yale University New HavenCT06520 United States

Metallic glasses are frequently used as structural materials. Therefore, it is important to develop methods to predict their mechanical response as a function of the microstructure prior to loading. We develop a novel coarse-grained spring network model, which describes the mechanical response of metallic glasses using an equivalent series network of springs, which can break and re-form to mimic atomic rearrangements during deformation. To validate the spring network model, we perform numerical simulations of quasistatic, uniaxial tensile deformation of Lennard-Jones and embedded atom method (EAM) potentials for Cu50Zr50 metallic glasses in the absence of large-scale shear band formation. We consider samples prepared using a wide range of cooling rates and with different amounts of crystalline order. We show that both the Lennard-Jones and EAM models possess qualitatively similar stress σ versus strain γ curves. By specifying five parameters in the spring network model (ultimate strength, strain at ultimate strength, slopes of σ(γ) at γ = 0 and at large strain, and strain at fracture where σ = 0), we can accurately describe the form of the stress-strain curves during uniaxial tension for the computational studies of Cu50Zr50, as well as recent experimental studies of several Zr-based metallic glasses. For the computational studies of Cu50Zr50, we find that the yield strain distribution is shifted to larger strains for slowly cooled glasses compared to rapidly cooled glasses. In addition, the average number of new springs and their rate of formation decreases with decreasing cooling rate. These effects offset each other at large strains, causing the stress-strain curve to become independent of the sample preparation protocol in this regime. In future studies, we will extract the parameters that define the spring network model directly from atomic rearrangements that occur during uniaxial deformation. © 2023, CC BY-NC-ND.

关键词： Metallic glass

来源：评论

学校读者我要写书评

暂无评论

Multi-class Weather Forecasting from Twitter Using Machine Learning Aprroaches

引用

Procedia Computer Science 2021年 179卷 47-54页

作者： Kartika Purwandari Join W.C. Sigalingging Tjeng Wawan Cenggoro Bens Pardamean Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Database Center Division of BMKG Meteorological Climatological and Geophysical Agency Jakarta Indonesia 10720 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480

Now in the era of big data, many are applying information methods accurately especially by social media. The aims of this study to classify the weather based on Twitter automatically using text mining by using Support Vector Machine (SVM), MultinomialNaive Bayes (MNB), and Logistic Regression (LR) method. The experimental results show that SVM substantially outperforms various other machine learning algorithms for the task of text classification with an accuracy value of 93%. This result proves that SVM is very suitable for text categorization. We use clustering technique to read the pattern in customers’ opinion about the restaurant based on some measurement variables.

关键词： weather classification twitter machine learning support vector machine multinomial naive bayes logistic regression

来源：评论

学校读者我要写书评

暂无评论

Count time series modelling of Twitter data topic modelling: A case of Indonesia flood events

引用

AIP Conference Proceedings 2023年第1期2594卷

作者： A. A. Hidayat B Pardamean Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

Twitter data provide rich and powerful information to leverage the dynamics of public perception to establish situational awareness and disaster mitigation strategies during critical times. In this paper, we perform topic modeling via Latent Dirichlet Allocation to extract topics from a collection of tweets related to Indonesia flood events in February 2021 with the query: “banjir”. The extracted topics are used as one of the features to build a generalized linear count time series model with Negative Binomial distribution. We find seven major topics from the model in which tweets containing a topic about the government’s role in handling the situation dominate the conversation. Taking into account a simple intervention analysis, we demonstrate a statistically significant change in the users’ behavior before and after the severe Jakarta flood on 20 February 2021. Moreover, a metric evaluation demonstrates that a covariate that describes the turning point of the Jakarta flood event is convenient to build a more accurate count time series model of the tweets.

关键词：

来源：评论

学校读者我要写书评

暂无评论

A Drug-Induced Liver Injury Prediction Model using Transcriptional Response Data with Graph Neural Network

A Drug-Induced Liver Injury Prediction Model using Transcrip...

引用

International Conference on Big Data and Smart Computing (BIGCOMP)

作者： Doyeong Hwang Minji Jeon Jaewoo Kang Department of Computer Science and Engineering Korea University Seoul Republic of Korea Interdisciplinary Graduate Program in Bioinformatics Korea University Seoul Republic of Korea

ISBN: (数字)9781728160344

ISBN: (纸本)9781728160351

Drug-Induced Liver Injury (DILI) is a major cause of failed drug candidates in clinical trials and withdrawal of approved drugs from the market. Therefore, machine learning-based DILI prediction can be key in increasing the success rate of drug discovery because drug candidates that are predicted to potentially induce liver injury can be rejected before clinical trials. However, existing DILI prediction models mainly focus on the chemical structures of drugs. Since we cannot determine whether a drug will cause liver injury based solely on its structure, DILI prediction based on the transcriptional effect of a drug on a cell is necessary. In this paper, we propose GLIT which is a model that uses transcriptional response data and chemical structures and can be used for drug-induced liver injury prediction. GLIT learns the embedding vectors of drug structures and drug-induced gene expression profiles using graph attention networks in a biological knowledge graph for predicting DILI. GLIT outperformed a baseline model that uses only drug structure information by 7% and 19.2% in terms of correct classification rate (CCR) and Matthews correlation coefficient (MCC), respectively. In addition, we conducted a literature survey to confirm whether the class labels of drugs, in the unknown DILI class, predicted by GLIT are correct.

关键词： Drugs Gene expression Neural networks Injuries Liver Predictive models Biological system modeling

来源：评论

学校读者我要写书评

暂无评论

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

请选择保存的检索档案：

请选择收藏分类：

通借通还

建议与咨询 留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

时间限定

文献类型

馆藏选择

核心期刊

语言

文献类型

帮助

文字说明：

检索规则说明：

检索范例：

分类表

所选分类

限定检索结果

文献类型

馆藏范围

日期分布

学科分类号

主题

机构

作者

语言

请选择保存的检索档案： 新增检索档案 确定 取消

请选择收藏分类： 新增自定义分类 确定 取消

通借通还

建议与咨询留下您的常用邮箱和电话号码，以便我们向您反馈解决方案和替代方法

请选择保存的检索档案：

请选择收藏分类：