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检索条件"机构=Bioinformatics Graduate Program"
758 条 记 录,以下是291-300 订阅
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Core packing of well-defined x-ray and NMR structures is the same
arXiv
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arXiv 2022年
作者: Grigas, Alex T. Liu, Zhuoyi Regan, Lynne O’Hern, Corey S. Graduate Program in Computational Biology and Bioinformatics Yale University New HavenCT06520 United States Integrated Graduate Program in Physical and Engineering Biology Yale University New HavenCT06520 United States Department of Mechanical Engineering and Materials Science Yale University New HavenCT06520 United States Institute of Quantitative Biology Biochemistry and Biotechnology Centre for Synthetic and Systems Biology School of Biological Sciences University of Edinburgh United Kingdom Department of Physics Yale University New HavenCT06520 United States Department of Applied Physics Yale University New HavenCT06520 United States
Numerous studies have investigated the differences and similarities between protein structures determined by solution NMR spectroscopy and those determined by x-ray crystallography. A fundamental question is whether a... 详细信息
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How Retroactivity Affects the Behavior of Incoherent Feed-Forward Loops
arXiv
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arXiv 2020年
作者: Wang, Junmin Belta, Calin Isaacson, Samuel A. Bioinformatics Graduate Program Boston University BostonMA United States Department of Mathematics and Statistics Boston University BostonMA United States
An incoherent feed-forward loop (IFFL) is a network motif known for its ability to accelerate responses and generate pulses. Though functions of IFFLs are well studied, most previous computational analysis of IFFLs us... 详细信息
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Functional neuroplasticity of facilitation and interference effects on inhibitory control following 3-month physical exercise in aging
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Scientific Reports 2024年 第1期14卷 1-13页
作者: Wu, Hong-Yi Huang, Chih-Mao Hsu, Ai-Ling Chen, Chiao-Nan Wu, Changwei W. Chen, Jyh-Horng Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan Department of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu Taiwan Bachelor Program in Artificial Intelligence Chang Gung University Taoyuan Taiwan Department of Psychiatry Chang Gung Memorial Hospital at Linkou Taoyuan Taiwan Department of Physical Therapy and Assistive Technology National Yang Ming Chiao Tung University Taipei Taiwan Graduate Institute of Mind Brain and Consciousness Taipei Medical University New Taipei Taiwan Research Center of Sleep Medicine Taipei Medical University Hospital Taipei Taiwan Department of Electrical Engineering National Taiwan University Taipei Taiwan
Preservation of executive function, like inhibition, closely links to the quality of life in senior adults. Although neuroimaging literature has shown enhanced inhibitory function followed by aerobic exercise, current...
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Bile acid synthesis impedes tumor-specific T cell responses during liver cancer
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Science (New York, N.Y.) 2025年 第6730期387卷 192-201页
作者: Varanasi, Siva Karthik Chen, Dan Liu, Yingluo Johnson, Melissa A. Miller, Cayla M. Ganguly, Souradipta Lande, Kathryn LaPorta, Michael A. Hoffmann, Filipe Araujo Mann, Thomas H. Teneche, Marcos G. Casillas, Eduardo Mangalhara, Kailash C. Mathew, Varsha Sun, Ming Jensen, Isaac J. Farsakoglu, Yagmur Chen, Timothy Parisi, Bianca Deota, Shaunak Havas, Aaron Lee, Jin Chung, H Kay Schietinger, Andrea Panda, Satchidananda Williams, April E. Farber, Donna L. Dhar, Debanjan Adams, Peter D. Feng, Gen-Sheng Shadel, Gerald S. Sundrud, Mark S. Kaech, Susan M. NOMIS Center for Immunobiology and Microbial Pathogenesis Salk Institute for Biological Studies La Jolla CA United States Department of Pathology School of Medicine University of California San Diego La Jolla CA United States Sanford Burnham Prebys Medical Discovery Institute La Jolla CA United States Department of Medicine School of Medicine University of California San Diego CA United States Razavi Newman Integrative Genomics and Bioinformatics Core Facility Salk Institute for Biological Studies La Jolla CA United States Department of Microbiology and Immunology Columbia University Irving Medical Center New York NY USA Department of Surgery Columbia University Irving Medical Center New York NY USA Regulatory Biology Laboratory Salk Institute for Biological Studies La Jolla CA United States Immunology Program Memorial Sloan Kettering Cancer Center New York NY USA Immunology and Microbial Pathogenesis Program Weill Cornell Graduate School of Medical Sciences New York NY USA Parker Institute for Cancer Immunotherapy New York NY USA Department of Microbiology and Immunology Geisel School of Medicine at Dartmouth Hanover NH USA Department of Medicine Geisel School of Medicine at Dartmouth Hanover NH USA Center for Digestive Health Dartmouth Health NH United States Dartmouth Cancer Center Dartmouth Health NH United States
The metabolic landscape of cancer greatly influences antitumor immunity, yet it remains unclear how organ-specific metabolites in the tumor microenvironment influence immunosurveillance. We found that accumulation of ...
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Phosphoproteomic analysis reveals distinctive responses in Mangrovibacter phragmatis under high-salinity condition
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Biochemical and biophysical research communications 2024年 736卷 150514页
作者: Hong Soon Chin Narendrakumar Ravi Varadharajulu Zhi-Han Lin Chuan-Chih Hsu Steve S-F Yu Institute of Chemistry Academia Sinica Taipei Taiwan Chemical Biology and Molecular Biophysics Program Taiwan International Graduate Program Academia Sinica Taipei Taiwan Institute of Bioinformatics and Structural Biology National Tsing Hua University Hsinchu Taiwan. Molecular Science and Technology Program Taiwan International Graduate Program Academia Sinica Taipei Taiwan Department of Chemistry National Tsing Hua University Hsinchu Taiwan. Institute of Biochemical Sciences National Taiwan University Taipei Taiwan. Institute of Plant and Microbial Biology Academia Sinica Taipei Taiwan. Molecular Science and Technology Program Taiwan International Graduate Program Academia Sinica Taipei Taiwan. Electronic address: sfyu@gate.sinica.edu.tw.
We conducted a thorough genome-wide investigation of protein phosphorylation in the halotolerant bacterium Mangrovibacter phragmitis (MPH) ASIOC01, using the Fe-IMAC enrichment method combined with tandem mass spectro... 详细信息
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Transcriptional regulation by PHGDH drives amyloid pathology in Alzheimer's disease
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Cell 2025年
作者: Chen, Junchen Hadi, Fatemeh Wen, Xingzhao Zhao, Wenxin Xu, Ming Xue, Shuanghong Lin, Pei Calandrelli, Riccardo Richard, John Lalith Charles Song, Zhixuan Li, Jessica Amani, Alborz Liu, Yang Chen, Xu Zhong, Sheng Shu Chien-Gene Lay Department of Bioengineering University of California San Diego La Jolla San Diego CA United States Institute of Engineering in Medicine University of California San Diego La Jolla San Diego CA United States Program in Bioinformatics and Systems Biology University of California San Diego La Jolla San Diego CA United States School of Biological Sciences University of California San Diego La Jolla San Diego CA United States Department of Neurosciences University of California San Diego La Jolla San Diego CA United States Neuroscience Graduate Program University of California San Diego La Jolla San Diego CA United States
Virtually all individuals aged 65 or older develop at least early pathology of Alzheimer's disease (AD), yet most lack disease-causing mutations in APP, PSEN, or MAPT, and many do not carry the APOE4 risk allele. ... 详细信息
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Application for sugarcane plantation: Manpower and transportation planning
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AIP Conference Proceedings 2023年 第1期2594卷
作者: H. G. Mawandha D. Sudigyo T. Suparyanto B. Pardamean Department of Agrotechnology Institute of Agriculture STIPER Yogyakarta Indonesia 55281 Bioinformatics & Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta Indonesia 11480
Sugarcane plantations in Indonesia are still managed in a labor-intensive manner, especially plantation-owned by farmers. Labor intensive means that every stage of work in sugarcane plantation management still uses ma...
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Antibodies from dengue patients with prior exposure to Japanese encephalitis virus are broadly neutralizing against Zika virus(vol 7, 15, 2024)
COMMUNICATIONS BIOLOGY
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COMMUNICATIONS BIOLOGY 2024年 第1期7卷 15页
作者: Salem, Gielenny M. Galula, Jedhan Ucat Wu, Shang-Rung Liu, Jyung-Hurng Chen, Yen-Hsu Wang, Wen-Hung Wang, Sheng-Fan Song, Cheng-Sheng Chen, Fan-Chi Abarientos, Adrian B. Chen, Guan-Wen Wang, Cheng-, I Chao, Day-Yu Graduate Institute of Microbiology and Public Health College of Veterinary Medicine National Chung Hsing University Taichung City 402 Taiwan. Institute of Oral Medicine School of Dentistry College of Medicine National Cheng Kung University Tainan City 701 Taiwan. Graduate Institute of Genomics and Bioinformatics College of Life Sciences National Chung Hsing University Taichung City 40227 Taiwan. School of Medicine College of Medicine National Sun Yat-Sen University Kaohsiung City 80424 Taiwan. Center for Tropical Medicine and Infectious Disease Research Kaohsiung Medical University Kaohsiung City 80708 Taiwan. Doctoral Program in Microbial Genomics National Chung Hsing University and Academia Sinica Taichung City 402 Taiwan. Singapore Immunology Network Agency for Science Technology and Research (A*STAR) 8A Biomedical Grove Immunos Singapore 138648 Singapore. Graduate Institute of Microbiology and Public Health College of Veterinary Medicine National Chung Hsing University Taichung City 402 Taiwan. dychao@nchu.edu.tw.
Exposure to multiple mosquito-borne flaviviruses within a lifetime is not uncommon; however, how sequential exposures to different flaviviruses shape the cross-reactive humoral response against an antigen from a diffe...
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Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text
arXiv
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arXiv 2023年
作者: Rehana, Hasin Çam, Nur Bengisu Basmaci, Mert Zheng, Jie Jemiyo, Christianah He, Yongqun Özgür, Arzucan Hur, Junguk Computer Science Graduate Program University of North Dakota Grand ForksND58202 United States Department of Computer Engineering Bogazici University Istanbul34342 Turkey Unit for Laboratory Animal Medicine Department of Microbiology and Immunology University of Michigan Ann ArborMI48109 United States Department of Biomedical Sciences University of North Dakota School of Medicine and Health Sciences Grand ForksND58202 United States Center for Computational Medicine and Bioinformatics University of Michigan Ann ArborMI48109 United States
Detecting protein-protein interactions (PPIs) is crucial for understanding genetic mechanisms, disease pathogenesis, and drug design. However, with the fast-paced growth of biomedical literature, there is a growing ne... 详细信息
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Tessellated granular metamaterials with tunable elastic moduli
arXiv
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arXiv 2023年
作者: Pashine, Nidhi Wang, Dong Zhang, Jerry Patiballa, Sree Kalyan Witthaus, Sven Shattuck, Mark D. O’Hern, Corey S. Kramer-Bottiglio, Rebecca Department of Mechanical Engineering & Materials Science Yale University New HavenCT06520 United States Department of Physics Yale University New HavenCT06520 United States Department of Applied Physics Yale University New HavenCT06520 United States Graduate Program in Computational Biology & Bioinformatics Yale University New HavenCT06520 United States Benjamin Levich Institute Physics Department The City College of the City University of New York New YorkNY10031 United States
Most granular packings possess shear moduli (G) that increase with the applied external pressure, and bulk moduli (B) that increase or remain constant with pressure. This paper presents "tessellated" granula... 详细信息
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