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检索条件"机构=Bioinformatics Program"
2106 条 记 录,以下是1901-1910 订阅
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Correction to: Genome-wide sequencing as a first-tier screening test for short tandem repeat expansions
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Genome medicine 2021年 第1期13卷 151页
作者: Indhu-Shree Rajan-Babu Junran J Peng Readman Chiu Chenkai Li Arezoo Mohajeri Egor Dolzhenko Michael A Eberle Inanc Birol Jan M Friedman Department of Medical Genetics University of British Columbia and Children's & Women's Hospital Vancouver BC V6H3N1 Canada. indhu.babu@bcchr.ca. Department of Medical and Molecular Genetics King's College London Strand London WC2R 2LS UK. indhu.babu@bcchr.ca. Department of Medical Genetics University of British Columbia and Children's & Women's Hospital Vancouver BC V6H3N1 Canada. Canada's Michael Smith Genome Sciences Centre BC Cancer Agency Vancouver BC V5Z4S6 Canada. Bioinformatics Graduate Program University of British Columbia Vancouver BC V6T1Z4 Canada. Illumina Inc. San Diego CA 92121 USA.
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Association between known Alzheimer’s disease risk loci andin vivobrain amyloid pathology in a Korean Cohort
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Alzheimer's & Dementia 2023年 第S24期19卷
作者: Hyejin Ahn Min Soo Byun Dahyun Yi Gijung Jung Yen-Ning Huang Anthony J. Griswold Margaret A. A Pericak-Vance Yu Kyeong Kim Yun-Sang Lee Chul-Ho Sohn Koung Mi Kang Jun-Young Lee Andrew J. Saykin Kwangsik Nho Dong Young Lee Interdisciplinary program of cognitive science Seoul National University College of Humanities Seoul Korea Republic of (South) HyejinAhn Interdisciplinary program of cognitive science Seoul National University College of Humanities Seoul Korea Republic of (South). Department of Psychiatry Seoul National University College of Medicine Seoul Korea Republic of (South) Seoul National University Dementia Research Center Seoul Korea Republic of (South) Department of Neuropsychiatry Seoul National University Hospital Seoul Korea Republic of (South) Institute of Human Behavioral Medicine Medical Research Center Seoul National University Seoul Korea Republic of (South) Center for Neuroimaging Department of Radiology and Imaging Sciences Indiana University School of Medicine Indianapolis IN USA Indiana Alzheimer Disease Research Center Indiana University School of Medicine Indianapolis IN USA University of Miami Miller School of Medicine Miami FL USA Department of Nuclear Medicine SMG-SNU Boramae Medical Center Seoul Korea Republic of (South) Department of Nuclear Medicine Seoul National University College of Medicine Seoul Korea Republic of (South) Department of Radiology Seoul National University Hospital Seoul Korea Republic of (South) Department of Neuropsychiatry SMG-SNU Boramae Medical Center Seoul Korea Republic of (South) Indiana Alzheimer’s Disease Research Center Indiana University School of Medicine Indianapolis IN USA Department of Medical and Molecular Genetics Indiana University School of Medicine Indianapolis IN USA Center for Computational Biology and Bioinformatics Indiana University School of Medicine Indianapolis IN USA
Background Most genome-wide association studies (GWAS) of Alzheimer’s disease (AD) have been conducted in populations of European ancestry. It is important to determine if known AD-related variants from these studies...
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Author Correction: Myeloid lineage enhancers drive oncogene synergy in CEBPA/CSF3R mutant acute myeloid leukemia
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Nature communications 2022年 第1期13卷 3471页
作者: Theodore P Braun Mariam Okhovat Cody Coblentz Sarah A Carratt Amy Foley Zachary Schonrock Brittany M Curtiss Kimberly Nevonen Brett Davis Brianna Garcia Dorian LaTocha Benjamin R Weeder Michal R Grzadkowski Joey C Estabrook Hannah G Manning Kevin Watanabe-Smith Sophia Jeng Jenny L Smith Amanda R Leonti Rhonda E Ries Shannon McWeeney Cristina Di Genua Roy Drissen Claus Nerlov Soheil Meshinchi Lucia Carbone Brian J Druker Julia E Maxson Knight Cancer Institute Oregon Health & Science University Portland OR 97239 USA. Division of Hematology and Medical Oncology Oregon Health & Science University Portland OR 97239 USA. Knight Cardiovascular Institute Oregon Health & Science University Portland OR 97239 USA. Program in Molecular and Cellular Biology Oregon Health & Science University Portland OR 97239 USA. Computational Biology Program Oregon Health & Science University Portland OR 97239 USA. Division of Bioinformatics and Computational Biology Oregon Health & Science University Portland OR 97239 USA. Clinical Research Division Fred Hutchinson Cancer Research Center 1100 Fairview Ave N Seattle WA 98109 USA. MRC Molecular Haematology Unit MRC Weatherall Institute of Molecular Medicine John Radcliffe Hospital Headley Way Oxford OX3 9DS UK. Division of Pediatric Hematology/Oncology University of Washington Seattle WA 98195 USA. Department of Molecular and Medical Genetics Oregon Health & Science University Portland OR 97239 USA. Howard Hughes Medical Institute Portland OR USA. Knight Cancer Institute Oregon Health & Science University Portland OR 97239 USA. maxsonj@ohsu.edu. Division of Hematology and Medical Oncology Oregon Health & Science University Portland OR 97239 USA. maxsonj@ohsu.edu.
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Founder pathogenic variants in colorectal neoplasia susceptibility genes in Ashkenazi Jews undergoing colonoscopy
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BJC reports 2024年 第1期2卷 17页
作者: Thibaut Matis Celine Domecq Nancy Hamel Ester Castellsagué Adriana Lopez-Doriga Stephen Marotta Peter Zauber William D Foulkes Cancer Genetics Unit Institut Bergonié Bordeaux France. BRIC (BoRdeaux Institute of onCology) UMR1312 INSERM Univ. Bordeaux F-33000 Bordeaux France. Cancer Research Program Research Institute of the McGill University Health Centre Montreal QC H4A 3J1 Canada. Department of Human Genetics McGill University Montreal QC Canada. Cancer Axis Lady Davis Institute Jewish General Hospital Montreal QC H3T 1E2 Canada. 34 Cervantes St Sant Just Desvern Barcelona Spain. Unit of Bioinformatics for Precision Oncology Catalan Institute of Oncology (ICO) L'Hospitalet de Llobregat Barcelona Spain. Cooperman Barnabas Medical Center Livingston NJ USA. Cancer Research Program Research Institute of the McGill University Health Centre Montreal QC H4A 3J1 Canada. william.foulkes@mcgill.ca. Department of Human Genetics McGill University Montreal QC Canada. william.foulkes@mcgill.ca. Cancer Axis Lady Davis Institute Jewish General Hospital Montreal QC H3T 1E2 Canada. william.foulkes@mcgill.ca.
BACKGROUND:Colorectal neoplasia is one of the most common tumors affecting Western populations.METHODS:In this study we used a custom amplicon sequencing platform and an in-house bioinformatic pipeline to study consti...
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GREGoR: Accelerating Genomics for Rare Diseases
arXiv
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arXiv 2024年
作者: Dawood, Moez Heavner, Ben Wheeler, Marsha M. Ungar, Rachel A. LoTempio, Jonathan Wiel, Laurens Berger, Seth Bernstein, Jonathan A. Chong, Jessica X. Délot, Emmanuèle C. Eichler, Evan E. Gibbs, Richard A. Lupski, James R. Shojaie, Ali Talkowski, Michael E. Wagner, Alex H. Wei, Chia-Lin Wellington, Christopher Wheeler, Matthew T. Carvalho, Claudia M.B. Gifford, Casey A. May, Susanne Miller, Danny E. Rehm, Heidi L. Sedlazeck, Fritz J. Vilain, Eric O'Donnell-Luria, Anne Posey, Jennifer E. Chadwick, Lisa H. Bamshad, Michael J. Montgomery, Stephen B. Human Genome Sequencing Center Baylor College of Medicine HoustonTX United States Department of Molecular and Human Genetics Baylor College of Medicine HoustonTX United States Medical Scientist Training Program Baylor College of Medicine HoustonTX United States Department of Biostatistics University of Washington SeattleWA United States Department of Genetics School of Medicine Stanford University StanfordCA United States Department of Pathology School of Medicine Stanford University Stanford CA United States Stanford Center for Biomedical Ethics School of Medicine Stanford University Stanford CA United States Institute for Clinical and Translational Science University of California IrvineCA United States Division of Cardiovascular Medicine School of Medicine Stanford University Stanford CA United States Division of Genetics and Metabolism Children’s National Rare Disease Institute WashingtonDC United States Center for Genetic Medicine Research Children’s National Rare Disease Institute WashingtonDC United States Department of Genomics and Precision Medicine George Washington University WashingtonDC United States Department of Pediatrics School of Medicine Stanford University Stanford CA United States Department of Pediatrics Dvision of Genetic Medicine University of Washington SeattleWA United States Brotman Baty Institute for Precision Medicine University of Washington SeattleWA United States Department of Genome Sciences University of Washington SeattleWA United States Howard Hughes Medical Institute University of Washington SeattleWA United States Department of Pediatrics Baylor College of Medicine HoustonTX United States Center for Genomic Medicine Massachusetts General Hospital BostonMA United States Program in Medical and Population Genetics Broad Institute of MIT and Harvard BostonMA United States Department of Neurology Massachusetts General Hospital Harvard Medical School BostonMA United States Stanley Center for
Rare diseases are collectively common, affecting approximately one in twenty individuals worldwide. In recent years, rapid progress has been made in rare disease diagnostics due to advances in DNA sequencing, developm... 详细信息
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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)
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NATURE 2023年 第7948期614卷 E37-E37页
作者: Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap
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Publisher Correction: Comprehensive molecular characterization of mitochondrial genomes in human cancers
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Nature genetics 2023年 第5期55卷 893页
作者: Yuan Yuan Young Seok Ju Youngwook Kim Jun Li Yumeng Wang Christopher J Yoon Yang Yang Inigo Martincorena Chad J Creighton John N Weinstein Yanxun Xu Leng Han Hyung-Lae Kim Hidewaki Nakagawa Keunchil Park Peter J Campbell Han Liang Department of Bioinformatics and Computational Biology The University of Texas MD Anderson Cancer Center Houston TX USA. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK. Graduate School of Medical Science and Engineering Korea Advanced Institute of Science and Technology Daejeon Korea. Department of Health Science and Technology Samsung Advanced Institute for Health Science and Technology Sungkyunkwan University School of Medicine Seoul Korea. Quantitative and Computational Biosciences Graduate Program Baylor College of Medicine Houston TX USA. Division of Biostatistics The University of Texas Health Science Center at Houston School of Public Health Houston TX USA. Department of Medicine and Dan L. Duncan Cancer Center Division of Biostatistics Baylor College of Medicine Houston TX USA. Department of Systems Biology The University of Texas MD Anderson Cancer Center Houston TX USA. Department of Applied Mathematics and Statistics Johns Hopkins University Baltimore MD USA. Department of Biochemistry and Molecular Biology The University of Texas Health Science Center at Houston McGovern Medical School Houston TX USA. Department of Biochemistry Ewha Womans University School of Medicine Seoul Korea. Laboratory for Cancer Genomics RIKEN Center for Integrative Medical Sciences Yokohama Japan. Division of Hematology/Oncology Samsung Medical Center Sungkyunkwan University School of Medicine Seoul Korea. kpark@skku.edu. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK. pc8@sanger.ac.uk. Cambridge University Hospitals NHS Foundation Trust Cambridge UK. pc8@sanger.ac.uk. Department of Bioinformatics and Computational Biology The University of Texas MD Anderson Cancer Center Houston TX USA. hliang1@***. Quantitative and Computational Biosciences Graduate Program Baylor College of Medicine Houston TX USA. hliang1@***. Department of Systems Biology The University of Texas MD Anderson Cancer Center Houston TX USA. hliang1@mdanderson
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Author Correction: Large-scale transcriptome-wide association study identifies new prostate cancer risk regions
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Nature communications 2019年 第1期10卷 171页
作者: Nicholas Mancuso Simon Gayther Alexander Gusev Wei Zheng Kathryn L Penney Zsofia Kote-Jarai Rosalind Eeles Matthew Freedman Christopher Haiman Bogdan Pasaniuc Department of Pathology and Laboratory Medicine David Geffen School of Medicine University of California Los Angeles Los Angeles 90095 CA USA. nmancuso@mednet.ucla.edu. The Center for Bioinformatics and Functional Genomics Cedars-Sinai Medical Center Los Angeles 90048 CA USA. Dana Farber Cancer Institute Boston 02215 MA USA. Division of Epidemiology Department of Medicine Vanderbilt Epidemiology Center Vanderbilt-Ingram Cancer Center Vanderbilt University School of Medicine Nashville 37232 TN USA. Department of Epidemiology Harvard T.H. Chan School of Public Health Boston 02115 MA USA. Channing Division of Network Medicine Department of Medicine Brigham and Women's Hospital/Harvard Medical School Boston 02115 MA USA. Division of Genetics and Epidemiology The Institute of Cancer Research London SW7 3RP UK. Royal Marsden NHS Foundation Trust London SW3 6JJ UK. Department of Medical Oncology Dana-Farber Cancer Institute and Harvard Medical School Boston 02215 MA USA. Department of Preventive Medicine Norris Comprehensive Cancer Center Keck School of Medicine University of Southern California Los Angeles 90015 CA USA. Department of Pathology and Laboratory Medicine David Geffen School of Medicine University of California Los Angeles Los Angeles 90095 CA USA. Department of Human Genetics David Geffen School of Medicine University of California Los Angeles Los Angeles 90095 CA USA. Bioinformatics Interdepartmental Program University of California Los Angeles Los Angeles 90095 CA USA.
The original version of this Article contained an error in the spelling of a member of the PRACTICAL Consortium, Manuela Gago-Dominguez, which was incorrectly given as Manuela Gago Dominguez. This has now been correct...
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Author Correction: Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing
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Nature communications 2020年 第1期11卷 4499页
作者: Igor Mandric Jeremy Rotman Harry Taegyun Yang Nicolas Strauli Dennis J Montoya William Van Der Wey Jiem R Ronas Benjamin Statz Douglas Yao Velislava Petrova Alex Zelikovsky Roberto Spreafico Sagiv Shifman Noah Zaitlen Maura Rossetti K Mark Ansel Eleazar Eskin Serghei Mangul Department of Computer Science University of California Los Angeles 404 Westwood Plaza Los Angeles CA 90095 USA. Department of Clinical Pharmacy School of Pharmacy University of Southern California 1540 Alcazar Street Los Angeles CA 90033 USA. Bioinformatics Interdepartmental Ph.D. Program University of California Los Angeles 611 Charles E. Young Drive East Los Angeles CA 90095-1570 USA. Biomedical Sciences Graduate Program University of California San Francisco 1675 Owens Street Suite 310 San Francisco CA 94143-0523 USA. Department of Molecular Cell and Developmental Biology University of California Los Angeles 610 Charles E. Young Drive South Los Angeles CA 90095 USA. Department of Microbiology Immunology and Molecular Genetics University of California Los Angeles 609 Charles E. Young Drive East Los Angeles CA 90095 USA. Program in Bioinformatics and Integrative Genomics Harvard Medical School 10 Shattuck Street Suite 514 Boston MA 02115 USA. Wellcome Trust Sanger Institute Wellcome Genome Campus Hinxton Cambridge CB10 1SA UK. Department of Computer Science Georgia State University 33 Gilmer Street SE Atlanta GA 30303 USA. The Laboratory of Bioinformatics I.M. Sechenov First Moscow State Medical University Moscow 119991 Russia. Institute for Quantitative and Computational Biosciences University of California Los Angeles 611 Charles E. Young Drive East Los Angeles CA 90095 USA. Department of Genetics The Institute of Life Sciences The Hebrew University of Jerusalem Jerusalem 9190401 Israel. Department of Medicine University of California San Francisco 533 Parnassus Avenue San Francisco CA 94143 USA. Immunogenetics Center Department of Pathology and Laboratory Medicine David Geffen School of Medicine University of California Los Angeles 1000 Veteran Avenue Los Angeles CA 90095-1652 USA. Sandler Asthma Basic Research Center Department of Microbiology and Immunology University of California San Francisco 513 Parnass
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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Erratum: Identification and characterization of nuclear and nucleolar localization signals in 58-kDa microspherule protein (MSP58)
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Journal of biomedical science 2015年 第1期22卷 60页
作者: Chuan-Pin Yang Chi-Wu Chiang Chang-Han Chen Yi-Chao Lee Mei-Hsiang Wu Yi-Huan Tsou Yu-San Yang Wen-Chang Chang Ding-Yen Lin Institute of Bioinformatics and Biosignal Transduction College of Bioscience and Biotechnology National Cheng Kung University Tainan 70101 Taiwan ROC. Institute of Molecular Medicine College of Medicine National Cheng Kung University Tainan 70101 Taiwan ROC. Infectious Diseases and Signaling Research Center National Cheng Kung University Tainan 70101 Taiwan ROC. Center for Translational Research in Biomedical Sciences Kaohsiung Chang Gung Memorial Hospital Kaohsiung 83301 Taiwan ROC. Department of Applied Chemistry National Chi Nan University Puli Nantou 54561 Taiwan ROC. Center for Neurotrauma and Neuroregeneration Taipei Medical University Taipei 11031 Taiwan ROC. Program for Neural Regenerative Medicine College of Medical Science and Technology Taipei Medical University Taipei 11031 Taiwan ROC. Department of Pharmacology College of Medicine National Cheng Kung University Tainan 70101 Taiwan ROC. Graduate Institute of Medical Sciences College of Medicine Taipei Medical University Taipei 11031 Taiwan ROC. Institute of Bioinformatics and Biosignal Transduction College of Bioscience and Biotechnology National Cheng Kung University Tainan 70101 Taiwan ROC. lindy@mail.ncku.edu.tw. Department of Pharmacology College of Medicine National Cheng Kung University Tainan 70101 Taiwan ROC. lindy@mail.ncku.edu.tw. Infectious Diseases and Signaling Research Center National Cheng Kung University Tainan 70101 Taiwan ROC. lindy@mail.ncku.edu.tw. Institute for Cancer Biology and Drug Discovery College of Medical Science and Technology Taipei Medical University Taipei 11031 Taiwan ROC. lindy@mail.ncku.edu.tw.
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