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npj metabolic health and disease 2024年第1期2卷 15页

作者： Annalise Schweickart Richa Batra Bryan J Neth Cameron Martino Liat Shenhav Anru R Zhang Pixu Shi Naama Karu Kevin Huynh Peter J Meikle Leyla Schimmel Amanda Hazel Dilmore Kaj Blennow Henrik Zetterberg Colette Blach Pieter C Dorrestein Rob Knight Suzanne Craft Rima Kaddurah-Daouk Jan Krumsiek Tri-Institutional Program in Computational Biology & Medicine Weill Cornell Medicine New York NY USA. Department of Physiology and Biophysics Weill Cornell Medicine Institute for Computational Biomedicine Englander Institute for Precision Medicine New York NY USA. Department of Neurology Mayo Clinic Rochester MN USA. Department of Pediatrics University of California San Diego La Jolla CA USA. Department of Microbiology New York University Grossman School of Medicine New York NY USA. Department of Biostatistics and Bioinformatics Duke University Durham NC USA. Tasmanian Independent Metabolomics and Analytical Chemistry Solutions (TIMACS) Hobart TAS Australia. Baker Heart and Diabetes Institute 75 Commercial Road Melbourne VIC Australia. Baker Department of Cardiovascular Research Translation and Implementation La Trobe University Bundoora VIC Australia. Department of Psychiatry and Behavioral Sciences Duke University Durham NC USA. Department of Psychiatry and Neurochemistry University of Gothenburg Gothenburg Sweden. Duke Molecular Physiology Institute Duke University Durham NC USA. Skaggs School of Pharmacy and Pharmaceutical Sciences University of California San Diego La Jolla CA USA. Departments of Pediatrics Computer Science and Engineering Bioengineering University of California San Diego La Jolla CA USA. Department of Gerontology and Geriatric Medicine Wake Forest University School of Medicine Winston Salem NC USA. Duke Institute of Brain Sciences Duke University Durham NC USA. Department of Medicine Duke University Durham NC USA.

Alzheimer's disease (AD) is influenced by a variety of modifiable risk factors, including a person's dietary habits. While the ketogenic diet (KD) holds promise in reducing metabolic risks and potentially affecting AD progression, only a few studies have explored KD's metabolic impact, especially on blood and cerebrospinal fluid (CSF). Our study involved participants at risk for AD, either cognitively normal or with mild cognitive impairment. The participants consumed both a modified Mediterranean Ketogenic Diet (MMKD) and the American Heart Association diet (AHAD) for 6 weeks each, separated by a 6-week washout period. We employed nuclear magnetic resonance (NMR)-based metabolomics to profile serum and CSF and metagenomics profiling on fecal samples. While the AHAD induced no notable metabolic changes, MMKD led to significant alterations in both serum and CSF. These changes included improved modifiable risk factors, like increased HDL-C and reduced BMI, reversed serum metabolic disturbances linked to AD such as a microbiome-mediated increase in valine levels, and a reduction in systemic inflammation. Additionally, the MMKD was linked to increased amino acid levels in the CSF, a breakdown of branched-chain amino acids (BCAAs), and decreased valine levels. Importantly, we observed a strong correlation between metabolic changes in the CSF and serum, suggesting a systemic regulation of metabolism. Our findings highlight that MMKD can improve AD-related risk factors, reverse some metabolic disturbances associated with AD, and align metabolic changes across the blood-CSF barrier.

关键词： Diseases Metabolomics

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Author Correction: Determination of RNA structural diversity and its role in HIV-1 RNA splicing

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Nature 2020年第7837期588卷 E16页

作者： Phillip J Tomezsko Vincent D A Corbin Paromita Gupta Harish Swaminathan Margalit Glasgow Sitara Persad Matthew D Edwards Lachlan Mcintosh Anthony T Papenfuss Ann Emery Ronald Swanstrom Trinity Zang Tammy C T Lan Paul Bieniasz Daniel R Kuritzkes Athe Tsibris Silvi Rouskin Whitehead Institute for Biomedical Research Cambridge MA USA. Program in Virology Harvard Medical School Boston MA USA. Brigham and Women's Hospital Boston MA USA. Bioinformatics Division Walter and Eliza Hall Institute Parkville Victoria Australia. Department of Medical Biology The University of Melbourne Melbourne Victoria Australia. Massachusetts Institute of Technology Cambridge MA USA. Computer Science and Artificial Intelligence Laboratory Massachusetts Institute of Technology Cambridge MA USA. Peter MacCallum Cancer Centre Melbourne Victoria Australia. Department of Mathematics and Statistics University of Melbourne Melbourne Victoria Australia. Sir Peter MacCallum Department of Oncology The University of Melbourne Melbourne Victoria Australia. Curriculum in Genetics and Molecular Biology University of North Carolina at Chapel Hill Chapel Hill NC USA. Lineberger Comprehensive Cancer Center University of North Carolina at Chapel Hill Chapel Hill NC USA. Department of Microbiology and Immunology University of North Carolina at Chapel Hill Chapel Hill NC USA. Department of Biochemistry and Biophysics University of North Carolina at Chapel Hill Chapel Hill NC USA. Laboratory of Retrovirology The Rockefeller University New York NY USA. Howard Hughes Medical Institute The Rockefeller University New York NY USA. Department of Medicine Harvard Medical School Boston MA USA. Whitehead Institute for Biomedical Research Cambridge MA USA. srouskin@wi.mit.edu.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries (vol 55, pg 89, 2023)

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NATURE GENETICS 2023年第3期55卷 519-520页

作者： Fernandez-Rozadilla, Ceres Timofeeva, Maria Chen, Zhishan Law, Philip Thomas, Minta Schmit, Stephanie Diez-Obrero, Virginia Hsu, Li Fernandez-Tajes, Juan Palles, Claire Sherwood, Kitty Briggs, Sarah Svinti, Victoria Donnelly, Kevin Farrington, Susan Blackmur, James Vaughan-Shaw, Peter Shu, Xiao-ou Long, Jirong Cai, Qiuyin Guo, Xingyi Lu, Yingchang Broderick, Peter Studd, James Huyghe, Jeroen Harrison, Tabitha Conti, David Dampier, Christopher Devall, Mathew Schumacher, Fredrick Melas, Marilena Rennert, Gad Obon-Santacana, Mireia Martin-Sanchez, Vicente Moratalla-Navarro, Ferran Oh, Jae Hwan Kim, Jeongseon Jee, Sun Ha Jung, Keum Ji Kweon, Sun-Seog Shin, Min-Ho Shin, Aesun Ahn, Yoon-Ok Kim, Dong-Hyun Oze, Isao Wen, Wanqing Matsuo, Keitaro Matsuda, Koichi Tanikawa, Chizu Ren, Zefang Gao, Yu-Tang Jia, Wei-Hua Hopper, John Jenkins, Mark Win, Aung Ko Pai, Rish Figueiredo, Jane Haile, Robert Gallinger, Steven Woods, Michael Newcomb, Polly Duggan, David Cheadle, Jeremy Kaplan, Richard Maughan, Timothy Kerr, Rachel Kerr, David Kirac, Iva Bohm, Jan Mecklin, Lukka-Pekka Jousilahti, Pekka Knekt, Paul Aaltonen, Lauri Rissanen, Harri Pukkala, Eero Eriksson, Johan Cajuso, Tatiana Hanninen, Ulrika Kondelin, Johanna Palin, Kimmo Tanskanen, Tomas Renkonen-Sinisalo, Laura Zanke, Brent Mannisto, Satu Albanes, Demetrius Weinstein, Stephanie Ruiz-Narvaez, Edward Palmer, Julie Buchanan, Daniel Platz, Elizabeth Visvanathan, Kala Ulrich, Cornelia Siegel, Erin Brezina, Stefanie Gsur, Andrea Campbell, Peter Chang-Claude, Jenny Hoffmeister, Michael Brenner, Hermann Slattery, Martha Potter, John Tsilidis, Konstantinos Schulze, Matthias Gunter, Marc Murphy, Neil Castells, Antoni Castellvi-Bel, Sergi Moreira, Leticia Arndt, Volker Shcherbina, Anna Stern, Mariana Pardamean, Bens Bishop, Timothy Giles, Graham Southey, Melissa Idos, Gregory McDonnell, Kevin Abu-Ful, Zomoroda Greenson, Joel Shulman, Katerina Lejbkowicz, Flavio Offit, Kenneth Su, Yu-Ru Steinfelder, Robert Keku, Temitope van Guelpen, Bethany Hudson, Thomas Hampel, Heather Pearlman, Edinburgh Cancer Research Centre Institute of Genomics and Cancer University of Edinburgh Edinburgh UK Genomic Medicine Group Instituto de Investigacion Sanitaria de Santiago Santiago de Compostela Spain Colon Cancer Genetics Group Medical Research Council Human Genetics Unit Institute of Genetics and Cancer University of Edinburgh Edinburgh UK Danish Institute for Advanced Study Department of Public Health University of Southern Denmark Odense Denmark Division of Epidemiology Department of Medicine Vanderbilt-Ingram Cancer Center Vanderbilt Epidemiology Center Vanderbilt University Medical Center Nashville TN USA Division of Genetics and Epidemiology Institute of Cancer Research London UK Public Health Sciences Division Fred Hutchinson Cancer Research Center Seattle WA USA Genomic Medicine Institute Cleveland Clinic Cleveland OH USA Population and Cancer Prevention Program Case Comprehensive Cancer Center Cleveland OH USA Colorectal Cancer Group ONCOBELL Program Bellvitge Biomedical Research Institute Barcelona Spain Oncology Data Analytics Program Catalan Institute of Oncology Barcelona Spain Consortium for Biomedical Research in Epidemiology and Public Health Madrid Madrid Spain Department of Clinical Sciences Faculty of Medicine University of Barcelona Barcelona Spain Department of Biostatistics School of Public Health University of Washington Seattle WA USA Institute of Cancer and Genomic Sciences College of Medical and Dental Sciences University of Birmingham Birmingham UK Department of Public Health Richard Doll Building University of Oxford Oxford UK Department of Biomedical Informatics Vanderbilt University School of Medicine Nashville TN USA Department of Preventive Medicine USC Norris Comprehensive Cancer Center Keck School of Medicine University of Southern California Los Angeles CA USA Center for Public Health Genomics Department of Public Health Sciences University of Virginia Charlottesville VA USA Department of Populat

Colorectal cancer (CRC) is a leading cause of mortality worldwide. We conducted a genome-wide association study meta-analysis of 100,204 CRC cases and 154,587 controls of European and east Asian ancestry, identifying 205 independent risk associations, of which 50 were unreported. We performed integrative genomic, transcriptomic and methylomic analyses across large bowel mucosa and other tissues. Transcriptome- and methylome-wide association studies revealed an additional 53 risk associations. We identified 155 high-confidence effector genes functionally linked to CRC risk, many of which had no previously established role in CRC. These have multiple different functions and specifically indicate that variation in normal colorectal homeostasis, proliferation, cell adhesion, migration, immunity and microbial interactions determines CRC risk. Crosstissue analyses indicated that over a third of effector genes most probably act outside the colonic mucosa. Our findings provide insights into colorectal oncogenesis and highlight potential targets across tissues for new CRC treatment and chemoprevention strategies.

关键词： Colorectal cancer Epigenomics Genome-wide association studies Transcriptomics

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Author Correction: π-HuB: the proteomic navigator of the human body

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Nature 2025年第8046期637卷 E22页

作者： Fuchu He Ruedi Aebersold Mark S Baker Xiuwu Bian Xiaochen Bo Daniel W Chan Cheng Chang Luonan Chen Xiangmei Chen Yu-Ju Chen Heping Cheng Ben C Collins Fernando Corrales Jürgen Cox Weinan E Jennifer E Van Eyk Jia Fan Pouya Faridi Daniel Figeys George Fu Gao Wen Gao Zu-Hua Gao Keisuke Goda Wilson Wen Bin Goh Dongfeng Gu Changjiang Guo Tiannan Guo Yuezhong He Albert J R Heck Henning Hermjakob Tony Hunter Narayanan Gopalakrishna Iyer Ying Jiang Connie R Jimenez Lokesh Joshi Neil L Kelleher Ming Li Yang Li Qingsong Lin Cui Hua Liu Fan Liu Guang-Hui Liu Yansheng Liu Zhihua Liu Teck Yew Low Ben Lu Matthias Mann Anming Meng Robert L Moritz Edouard Nice Guang Ning Gilbert S Omenn Christopher M Overall Giuseppe Palmisano Yaojin Peng Charles Pineau Terence Chuen Wai Poon Anthony W Purcell Jie Qiao Roger R Reddel Phillip J Robinson Paola Roncada Chris Sander Jiahao Sha Erwei Song Sanjeeva Srivastava Aihua Sun Siu Kwan Sze Chao Tang Liujun Tang Ruijun Tian Juan Antonio Vizcaíno Chanjuan Wang Chen Wang Xiaowen Wang Xinxing Wang Yan Wang Tobias Weiss Mathias Wilhelm Robert Winkler Bernd Wollscheid Limsoon Wong Linhai Xie Wei Xie Tao Xu Tianhao Xu Liying Yan Jing Yang Xiao Yang John Yates Tao Yun Qiwei Zhai Bing Zhang Hui Zhang Lihua Zhang Lingqiang Zhang Pingwen Zhang Yukui Zhang Yu Zi Zheng Qing Zhong Yunping Zhu State Key Laboratory of Medical Proteomics Beijing Proteome Research Center National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics Beijing China. hefc@***. International Academy of Phronesis Medicine (Guangdong) Guangdong China. hefc@***. Department of Biology Institute of Molecular Systems Biology ETH Zurich Zurich Switzerland. aebersold@imsb.biol.ethz.ch. Macquarie Medical School Macquarie University Sydney New South Wales Australia. Institute of Pathology and Southwest Cancer Center Southwest Hospital Third Military Medical University (Army Medical University) and Key Laboratory of Tumor Immunopathology Ministry of Education of China Chongqing China. Institute of Health Service and Transfusion Medicine Beijing China. Department of Pathology and The Sidney Kimmel Comprehensive Cancer Center Johns Hopkins University Baltimore MD USA. State Key Laboratory of Medical Proteomics Beijing Proteome Research Center National Center for Protein Sciences (Beijing) Beijing Institute of Lifeomics Beijing China. Key Laboratory of Systems Biology Center for Excellence in Molecular Cell Science Shanghai Institute of Biochemistry and Cell Biology Chinese Academy of Sciences Shanghai China. Department of Nephrology First Medical Center of Chinese PLA General Hospital Nephrology Institute of the Chinese People's Liberation Army State Key Laboratory of Kidney Diseases National Clinical Research Center for Kidney Diseases Beijing Key Laboratory of Kidney Disease Research Beijing China. Institute of Chemistry Academia Sinica Taipei China. National Biomedical Imaging Center State Key Laboratory of Membrane Biology Institute of Molecular Medicine Peking-Tsinghua Center for Life Sciences College of Future Technology Peking University Beijing China. School of Biological Sciences Queen's University of Belfast Belfast UK. Functional Proteomics Laboratory Centro Nacional de Biotecnología-CSIC Madrid Spain. Computational Systems Biochemistry Research Group Ma

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The generation challenge programme platform: Semantic standards and workbench for crop science

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International Journal of Plant Genomics 2008年第1期2008卷 369601页

作者： Bruskiewich, Richard Senger, Martin Davenport, Guy Ruiz, Manuel Rouard, Mathieu Hazekamp, Tom Takeya, Masaru Doi, Koji Satoh, Kouji Costa, Marcos Simon, Reinhard Balaji, Jayashree Akintunde, Akinnola Mauleon, Ramil Wanchana, Samart Shah, Trushar Anacleto, Mylah Portugal, Arllet Ulat, Victor Jun Thongjuea, Supat Braak, Kyle Ritter, Sebastian Dereeper, Alexis Skofic, Milko Rojas, Edwin Martins, Natalia Pappas, Georgios Alamban, Ryan Almodiel, Roque Barboza, Lord Hendrix Detras, Jeffrey Manansala, Kevin Mendoza, Michael Jonathan Morales, Jeffrey Peralta, Barry Valerio, Rowena Zhang, Yi Gregorio, Sergio Hermocilla, Joseph Echavez, Michael Yap, Jan Michael Farmer, Andrew Schiltz, Gary Lee, Jennifer Casstevens, Terry Jaiswal, Pankaj Meintjes, Ayton Wilkinson, Mark Good, Benjamin Wagner, James Morris, Jane Marshall, David Collins, Anthony Kikuchi, Shoshi Metz, Thomas McLaren, Graham Van Hintum, Theo Crop Research Informatics Laboratory International Rice Research Institute (IRRI) DAPO Box 7777 Metro Manila Philippines Crop Research Informatics Laboratory International Maize and Wheat Improvement Center (CIMMYT) DF 06600 Mexico Apdo. Postal 6-641 Mexico Centre International de Recherche Agronomique Pour le Développement (CIRAD) 34398 Montpellier Cedex 5 Avenue Agropolis France Bioversity International 00057 Maccarese (Fiumicino) Rome Via dei Tre Denari 472/a Italy National Institute for Agrobiological Sciences (NIAS) Tsukuba Ibaraki 305-8602 Kannondai 2-1-2 Japan Empresa Brasileira de Pesquisa Agropecuaria (EMBRAPA) Brasilia DF 70770-900 Parque Estaçao Biologia Final W5 Norte Brazil Centro Internacional de la Papa (CIP) Lima 12 Avenida La Molina 1895 La Molina Peru International Crops Research Institute for the Semi-Arid Tropics Patancheru Andhra Pradesh 502324 India International Center for Agricultural Research in the Dry Areas Aleppo P.O. Box 5466 Syrian Arab Republic National Center for Genetic Engineering and Biotechnology 113 Thailand Science Park Klong Luang Pathumthani 12120 Phahonyothin Road Klong 1 Thailand Institute of Computer Science College of Arts and Sciences University of the Philippines Los Banos Laguna 4031 Philippines Department of Computer Science University of the Philippines Melchor Hall Diliman Quezon City 1101 Philippines National Center for Genome Resources Santa Fe NM 87505 2935 Rodeo Park Drive East United States Scottish Crop Research Institute Invergowrie Dundee DD2 5DA United Kingdom Department of Plant Breeding Cornell University Ithaca NY 14853 United States African Centre for Gene Technologies Lynnwood Ridge 0040 P.O. Box 75011 South Africa Department of Medical Genetics Faculty of Medicine University of British Columbia Vancouver BC V6T 1Z3 Canada School of Computing Science Simon Fraser Universtiy Burnaby BC V5A 1S6 8888 University Drive Canada Bioinformatics Graduate Program Genome Sciences Centre BC

The Generation Challenge programme (GCP) is a global crop research consortium directed toward crop improvement through the application of comparative biology and genetic resources characterization to plant breeding. A key consortium research activity is the development of a GCP crop bioinformatics platform to support GCP research. This platform includes the following: (i) shared, public platform-independent domain models, ontology, and data formats to enable interoperability of data and analysis flows within the platform;(ii) web service and registry technologies to identify, share, and integrate information across diverse, globally dispersed data sources, as well as to access high-performance computational (HPC) facilities for computationally intensive, high-throughput analyses of project data;(iii) platform-specific middleware reference implementations of the domain model integrating a suite of public (largely open-access/-source) databases and software tools into a workbench to facilitate biodiversity analysis, comparative analysis of crop genomic data, and plant breeding decision making.

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Publisher Correction: A phenotypic spectrum of autism is attributable to the combined effects of rare variants, polygenic risk and sex

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Nature genetics 2022年第8期54卷 1259页

作者： Danny Antaki James Guevara Adam X Maihofer Marieke Klein Madhusudan Gujral Jakob Grove Caitlin E Carey Oanh Hong Maria J Arranz Amaia Hervas Christina Corsello Keith K Vaux Alysson R Muotri Lilia M Iakoucheva Eric Courchesne Karen Pierce Joseph G Gleeson Elise B Robinson Caroline M Nievergelt Jonathan Sebat Biomedical Sciences Graduate Program University of California San Diego La Jolla CA USA. Beyster Center for Psychiatric Genomics University of California San Diego La Jolla CA USA. Department of Psychiatry University of California San Diego La Jolla CA USA. Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA. Institute for Genomic Medicine University of California San Diego La Jolla CA USA. Department of Neurosciences University of California San Diego La Jolla CA USA. Department of Biomedicine Aarhus University Aarhus Denmark. The Lundbeck Foundation Initiative for Integrative Psychiatric Research iPSYCH Aarhus Denmark. Center for Genomics and Personalized Medicine and Center for Integrative Sequencing iSEQ Aarhus Denmark. Bioinformatics Research Centre Aarhus University Aarhus Denmark. Harvard T.H. Chan School of Public Health Broad Institute of the Massachusetts Institute of Technology and Harvard Cambridge MA USA. Research Laboratory Unit Fundacio Docencia i Recerca Mutua Terrassa Spain. Child and Adolescent Mental Health Unit Hospital Universitari Mútua de Terrassa Barcelona Spain. TEACCH Autism Program University of North Carolina Chapel Hill NC USA. Human Longevity Inc. San Diego CA USA. Department of Pediatrics and Department of Cellular & Molecular Medicine University of California San Diego School of Medicine Center for Academic Research and Training in Anthropogeny Archealization Center Kavli Institute for Brain and Mind La Jolla CA USA. Autism Center of Excellence University of California San Diego La Jolla CA USA. Beyster Center for Psychiatric Genomics University of California San Diego La Jolla CA USA. jsebat@ucsd.edu. Department of Psychiatry University of California San Diego La Jolla CA USA. jsebat@ucsd.edu. Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA. jsebat@ucsd.edu. Institute for Genomic Medicine University of Californi

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Author Correction: Liquid biopsy epigenomic profiling for cancer subtyping

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Nature medicine 2024年第3期30卷 907页

作者： Sylvan C Baca Ji-Heui Seo Matthew P Davidsohn Brad Fortunato Karl Semaan Shahabbedin Sotudian Gitanjali Lakshminarayanan Miklos Diossy Xintao Qiu Talal El Zarif Hunter Savignano John Canniff Ikenna Madueke Renee Maria Saliby Ziwei Zhang Rong Li Yijia Jiang Len Taing Mark Awad Cindy H Chau James A DeCaprio William D Figg Tim F Greten Aaron N Hata F Stephen Hodi Melissa E Hughes Keith L Ligon Nancy Lin Kimmie Ng Matthew G Oser Catherine Meador Heather A Parsons Mark M Pomerantz Arun Rajan Jerome Ritz Manisha Thakuria Sara M Tolaney Patrick Y Wen Henry Long Jacob E Berchuck Zoltan Szallasi Toni K Choueiri Matthew L Freedman Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA. Center for Functional Cancer Epigenetics Dana-Farber Cancer Institute Boston MA USA. Eli and Edythe L. Broad Institute Cambridge MA USA. Computational Health Informatics Program Boston Children's Hospital Boston MA USA. Lowe Center for Thoracic Oncology Dana-Farber Cancer Institute Harvard Medical School Boston MA USA. Molecular Pharmacology Section Genitourinary Malignancies Branch Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda MD USA. Department of Medicine Brigham and Women's Hospital Harvard Medical School Boston MA USA. Liver Cancer Program Center for Cancer Research National Cancer Institute National Institutes of Health Bethesda MD USA. Massachusetts General Hospital Cancer Center Boston MA USA. Department of Medicine Massachusetts General Hospital and Harvard Medical School Boston MA USA. Department of Pathology Dana-Farber Cancer Institute Boston MA USA. Thoracic and Gastrointestinal Malignancies Branch Center for Cancer Research National Cancer Institute National Institute of Health Bethesda MD USA. Department of Dermatology Brigham and Women's Hospital Harvard Medical School Boston MA USA. Center for Cutaneous Oncology Dana-Farber/Brigham and Women's Cancer Center Boston MA USA. Center for Neuro-Oncology Dana-Farber Cancer Institute Boston MA USA. Department of Neurology Brigham and Women's Hospital and Harvard Medical School Boston MA USA. Danish Cancer Institute Copenhagen Denmark. Department of Bioinformatics and Department of Pathology Forensic and Insurance Medicine Semmelweis University Budapest Hungary. Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA. matthew_freedman@dfci.harvard.edu. Center for Functional Cancer Epigenetics Dana-Farber Cancer Institute Boston MA USA. matthew_freedman@dfci.harvard.edu. Eli and Edythe L. Broad Institute Cambridge MA USA. matthew_fr

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Correction: The Parkinson's disease risk gene cathepsin B promotes fibrillar alpha-synuclein clearance, lysosomal function and glucocerebrosidase activity in dopaminergic neurons

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Molecular neurodegeneration 2024年第1期19卷 94页

作者： Jace Jones-Tabah Kathy He Nathan Karpilovsky Konstantin Senkevich Ghislaine Deyab Isabella Pietrantonio Thomas Goiran Yuting Cousineau Daria Nikanorova Taylor Goldsmith Esther Del Cid Pellitero Carol X-Q Chen Wen Luo Zhipeng You Narges Abdian Jamil Ahmad Jennifer A Ruskey Farnaz Asayesh Dan Spiegelman Stanley Fahn Cheryl Waters Oury Monchi Yves Dauvilliers Nicolas Dupré Irina Miliukhina Alla Timofeeva Anton Emelyanov Sofya Pchelina Lior Greenbaum Sharon Hassin-Baer Roy N Alcalay Austen Milnerwood Thomas M Durcan Ziv Gan-Or Edward A Fon Neurodegenerative Diseases Group Department of Neurology and Neurosurgery McGill Parkinson Program Montreal Neurological Institute-Hospital McGill University Montreal Québec Canada. Department of Neurology and Neurosurgery McGill University Montréal Canada. Research Department Bioinformatics Institute Saint-Petersburg Russia. Early Drug Discovery Unit (EDDU) Montreal Neurological Institute-Hospital McGill University Montreal Canada. Department of Human Genetics McGill University Montréal Canada. Department of Neurology College of Physicians and Surgeons Columbia University Medical Center New York NY USA. Département de Radiologie Radio-Oncologie Et Médecine Nucléaire Université de Montréal Montréal QC Canada. Centre de Recherche de L'Institut Universitaire de Gériatrie de Montréal Montréal QC Canada. Sleep Unit Department of Neurology National Reference Center for Narcolepsy Gui-de-Chauliac Hospital CHU Montpellier University of Montpellier Montpellier France. Neuroscience Axis CHU de Québec - Université Laval Quebec City G1V 4G2 Canada. Department of Medicine Faculty of Medicine Université Laval Québec QC G1V 0A6 Canada. Institute of the Human Brain of RAS St. Petersburg Russia. First Pavlov State Medical University of St. Petersburg Saint-Petersburg Russia. Sackler Faculty of Medicine Tel Aviv University Tel Aviv Israel. The Joseph Sagol Neuroscience Center Sheba Medical Center Tel Hashomer Ramat Gan Israel. Department of Neurology The Movement Disorders Institute Sheba Medical Center Tel Hashomer Ramat Gan Israel. Neurological Institute Tel Aviv Sourasky Medical Center Tel Aviv Israel. Neurodegenerative Diseases Group Department of Neurology and Neurosurgery McGill Parkinson Program Montreal Neurological Institute-Hospital McGill University Montreal Québec Canada. ted.fon@mcgill.ca. Department of Neurology and Neurosurgery McGill University Montréal Canada. ted.fon@mcgill.ca.

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Author Correction: Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing

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Nature communications 2022年第1期13卷 5291页

作者： Baolei Yuan Xuan Zhou Keiichiro Suzuki Gerardo Ramos-Mandujano Mengge Wang Muhammad Tehseen Lorena V Cortés-Medina James J Moresco Sarah Dunn Reyna Hernandez-Benitez Tomoaki Hishida Na Young Kim Manal M Andijani Chongwei Bi Manching Ku Yuta Takahashi Jinna Xu Jinsong Qiu Ling Huang Christopher Benner Emi Aizawa Jing Qu Guang-Hui Liu Zhongwei Li Fei Yi Yanal Ghosheh Changwei Shao Maxim Shokhirev Patrizia Comoli Francesco Frassoni John R Yates Xiang-Dong Fu Concepcion Rodriguez Esteban Samir Hamdan Juan Carlos Izpisua Belmonte Mo Li Bioscience Program Biological and Environmental Science and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia. Gene Expression Laboratory Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Institute for Advanced Co-Creation Studies Graduate School of Engineering Science Osaka University Osaka Japan. Department of Cell Biology Scripps Research Institute La Jolla CA 92037 USA. The Waitt Advanced Biophotonics Core Facility Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Altos Labs Inc. 5510 Morehouse Drive Suite 300 San Diego CA 92121 USA. Laboratory of Biological Chemistry School of Pharmaceutical Sciences Wakayama Medical University 25-1 Shitibancho Wakayama Wakayama 640-8156 Japan. Next-generation sequencing core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Life Science Center Tsukuba Advanced Research Alliance University of Tsukuba 1-1-1 Tennoudai Tsukuba Ibaraki 305-8577 Japan. Department of Cellular & Molecular Medicine University of California at San Diego La Jolla CA 92093 USA. Integrative Genomics and Bioinformatics Core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. State Key Laboratory of Membrane Biology Institute of Zoology Chinese Academy of Sciences Beijing 100101 China. University of Southern California 1333 San Pablo Street MMR 618 Los Angeles CA 90033 USA. Ambys Medicines 131 Oyster Point Blvd. Suite 200 South San Francisco CA 94080 USA. Pediatric Hematology/Oncology and Cell Factory Fondazione IRCCS Policlinico San Matteo Pavia Italy. Department of Research Laboratories and Director of Center for Stem Cell and Cell Therapy Instituto G. Gaslini Children Hospital Scientific Institute 16147 Genova Italy. Bioscience Program Biological and Environmental Science and Engineering

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Author Correction: Greengenes2 unifies microbial data in a single reference tree

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Nature biotechnology 2024年第5期42卷 813页

作者： Daniel McDonald Yueyu Jiang Metin Balaban Kalen Cantrell Qiyun Zhu Antonio Gonzalez James T Morton Giorgia Nicolaou Donovan H Parks Søren M Karst Mads Albertsen Philip Hugenholtz Todd DeSantis Se Jin Song Andrew Bartko Aki S Havulinna Pekka Jousilahti Susan Cheng Michael Inouye Teemu Niiranen Mohit Jain Veikko Salomaa Leo Lahti Siavash Mirarab Rob Knight Department of Pediatrics University of California San Diego School of Medicine La Jolla CA USA. Department of Electrical and Computer Engineering University of California San Diego La Jolla CA USA. Bioinformatics and Systems Biology Program University of California San Diego La Jolla CA USA. Department of Computer Science and Engineering University of California San Diego La Jolla CA USA. School of Life Sciences Arizona State University Tempe AZ USA. Biodesign Center for Fundamental and Applied Microbiomics Arizona State University Tempe AZ USA. Biostatistics & Bioinformatics Branch Eunice Kennedy Shriver National Institute of Child Health and Human Development National Institutes of Health Bethesda MD USA. Halicioglu Data Science Institute University of California San Diego La Jolla CA USA. Australian Centre for Ecogenomics School of Chemistry and Molecular Biosciences The University of Queensland St Lucia Queensland Australia. Department of Obstetrics and Gynecology Columbia University New York NY USA. Department of Chemistry and Bioscience Aalborg University Aalborg Denmark. Department of Informatics Second Genome Brisbane CA USA. Center for Microbiome Innovation Jacobs School of Engineering University of California San Diego La Jolla CA USA. Finnish Institute for Health and Welfare Helsinki Finland. Institute for Molecular Medicine Finland FIMM-HiLIFE Helsinki Finland. Division of Cardiology Brigham and Women's Hospital Boston MA USA. Cedars-Sinai Medical Center Los Angeles CA USA. Cambridge Baker Systems Genomics Initiative Baker Heart and Diabetes Institute Melbourne Victoria Australia. Cambridge Baker Systems Genomics Initiative Department of Public Health and Primary Care University of Cambridge Cambridge UK. Division of Medicine Turku University Hospital and University of Turku Turku Finland. Sapient Bioanalytics LLC San Diego CA USA. Department of Computing University of Turku Turku Finland. Department of Pediatrics Uni

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