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检索条件"机构=Bioinformatics and Biomedical Data Science Division"
89 条 记 录,以下是1-10 订阅
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Modeling the causal regulatory network by integrating chromatin accessibility and transcriptome data
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National science Review 2016年 第2期3卷 240-251页
作者: Yong Wang Rui Jiang Wing Hung Wong Department of Statistics Department of Biomedical Data ScienceBio-X ProgramStanford University Academy of Mathematics and Systems Science National Center for Mathematics and Interdisciplinary SciencesChinese Academy of Sciences MOE Key Laboratory of Bioinformatics Bioinformatics Division and Center for Synthetic and Systems BiologyTNLISTDepartment of AutomationTsinghua University
Cell packs a lot of genetic and regulatory information through a structure known as chromatin,*** is wrapped around histone proteins and is tightly packed in a remarkable *** express a gene in a specific coding region... 详细信息
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biomedical data and AI
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science China Life sciences 2025年 第5期68卷 1536-1540页
作者: Hao Xu Shibo Zhou Zefeng Zhu Vincenzo Vitelli Liangyi Chen Ziwei Dai Ning Yang Luhua Lai Shengyong Yang Sergey Ovchinnikov Zhuoran Qiao Sirui Liu Chen Song Jianfeng Pei Han Wen Jianfeng Feng Yaoyao Zhang Zhengwei Xie Yang-Yu Liu Zhiyuan Li Fulai Jin Hao Li Mohammad Lotfollahi Xuegong Zhang Ge Yang Shihua Zhang Ge Gao Pulin Li Qi Liu Jing-Dong Jackie Han Peking-Tsinghua Center for Life Sciences (CLS) Academy for Advanced Interdisciplinary StudiesPeking University Center for Quantitative Biology (CQB) Academy for Advanced Interdisciplinary StudiesPeking University Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program Academy for Advanced Interdisciplinary StudiesPeking University Department of Physics University of Chicago School of Life Sciences Southern University of Science and Technology Peking University Chengdu Academy for Advanced Interdisciplinary Biotechnologies College of Chemistry and Molecular Engineering Peking University Department of Biotherapy Cancer Center and State Key Laboratory of BiotherapyWest China HospitalSichuan University Department of Biology Massachusetts Institute of Technology Lambic Therapeutics Inc. Changping Laboratory Al for Science Institute Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence Fudan University Department of Obstetrics and Gynecology West China Second University HospitalSichuan University Peking University International Cancer Institute and Peking University-Yunnan Baiyao International Medical Institute and State Key Laboratory of Natural and Biomimetic Drugs Department of Molecular and Cellular PharmacologySchool of Pharmaceutical SciencesPeking University Health Science CenterPeking University Channing Division of Network Medicine Department of MedicineBrigham and Women's Hospital and Harvard Medical School Center for Artificial Intelligence and Modeling the Carl R.Woese Institute for Genomic BiologyUniversity of Illinois Urbana-Champaign Department of Genetics and Genome Sciences School of Medicine and Department of Computer and Data Sciences and Department of Population and Quantitative Health SciencesCase Western Reserve University Department of Biochemistry and Biophysics University of California Sanger Institute Department of Automation Tsinghua University State Key Laboratory of Multimodal Artificial Intelligence Systems I
The development of artificial intelligence(AI) and the mining of biomedical data complement each other. From the direct use of computer vision results to analyze medical images for disease screening, to now integratin...
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Artificial intelligence for modelling infectious disease epidemics
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Nature 2025年 第8051期638卷 623-635页
作者: Kraemer, Moritz U. G. Tsui, Joseph L.-H. Chang, Serina Y. Lytras, Spyros Khurana, Mark P. Vanderslott, Samantha Bajaj, Sumali Scheidwasser, Neil Curran-Sebastian, Jacob Liam Semenova, Elizaveta Zhang, Mengyan Unwin, H. Juliette T. Watson, Oliver J. Mills, Cathal Dasgupta, Abhishek Ferretti, Luca Scarpino, Samuel V. Koua, Etien Morgan, Oliver Tegally, Houriiyah Paquet, Ulrich Moutsianas, Loukas Fraser, Christophe Ferguson, Neil M. Topol, Eric J. Duchêne, David A. Stadler, Tanja Kingori, Patricia Parker, Michael J. Dominici, Francesca Shadbolt, Nigel Suchard, Marc A. Ratmann, Oliver Flaxman, Seth Holmes, Edward C. Gomez-Rodriguez, Manuel Schölkopf, Bernhard Donnelly, Christl A. Pybus, Oliver G. Cauchemez, Simon Bhatt, Samir Pandemic Sciences Institute University of Oxford Oxford United Kingdom Department of Biology University of Oxford Oxford United Kingdom Department of Electrical Engineering and Computer Science University of California Berkeley Berkeley CA United States UCSF UC Berkeley Joint Program in Computational Precision Health Berkeley CA United States Division of Systems Virology Department of Microbiology and Immunology The Institute of Medical Science The University of Tokyo Tokyo Japan Section of Epidemiology Department of Public Health University of Copenhagen Copenhagen Denmark Oxford Vaccine Group University of Oxford and NIHR Oxford Biomedical Research Centre Oxford United Kingdom Department of Epidemiology and Biostatistics Imperial College London London United Kingdom Department of Computer Science University of Oxford Oxford United Kingdom School of Mathematics University of Bristol Bristol United Kingdom MRC Centre for Global Infectious Disease Analysis School of Public Health Imperial College London London United Kingdom Department of Statistics University of Oxford Oxford United Kingdom Doctoral Training Centre University of Oxford Oxford United Kingdom Institute for Experiential AI Northeastern University MA Boston Thailand Santa Fe Institute Santa Fe NM United States World Health Organization Regional Office for Africa Brazzaville Congo WHO Hub for Pandemic and Epidemic Intelligence Health Emergencies Programme World Health Organization Berlin Germany Centre for Epidemic Response and Innovation (CERI) School for Data Science and Computational Thinking Stellenbosch University Stellenbosch South Africa African Institute for Mathematical Sciences (AIMS) South Africa Muizenberg Cape Town South Africa Genomics England London United Kingdom Scripps Research La Jolla CA United States Department of Biosystems Science and Engineering ETH Zürich Basel Switzerland Swiss Institute of Bioinformatics Lausanne Switzerland The Ethox Centre Nuffield
Infectious disease threats to individual and public health are numerous, varied and frequently unexpected. Artificial intelligence (AI) and related technologies, which are already supporting human decision making in e...
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Organoid morphology-guided classification for oral cancer reveals prognosis
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Cell Reports Medicine 2025年 第5期6卷 102129-102129页
作者: Lee, Mi Rim Kang, Sumin Lee, Jonghyun Kong, Sun-Young Kim, Youngwook Lee, Yu-Sun Shon, Hye Won Kang, Gyeongmin Lee, Jiyoung Youn, Suk Min Kwack, Da Woon Park, Joo Yong Kim, Soung Min Choi, Wonyoung Lee, Jong-Ho Shin, Dongkwan Kwon, Ik-Jae Choi, Sung-Woen Kim, Yun-Hee Molecular Imaging Branch Division of Convergence Technology Research Institute of National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Department of Cancer Biomedical Science National Cancer Center Graduate School of Cancer Science and Policy 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Bioinformatics Branch Division of Cancer Data Science Research Institute of National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Targeted Therapy Branch Division of Rare and Refractory Cancer Research Institute of National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Department of Laboratory Medicine National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Oral Oncology Clinic Research Institute and Hospital National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Department of Oral and Maxillofacial Surgery Seoul National University Dental Hospital Dental Research Institute School of Dentistry Seoul National University 101 Daehak-ro Jongno-gu Seoul 03080 South Korea Center for Clinical Trials Research Institute and Hospital National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Cancer Molecular Biology Branch Division of Cancer Biology Research Institute of National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea Rare & Pediatric Cancer Branch Division of Rare and Refractory Cancer Research Institute of National Cancer Center 323 Ilsan-ro Ilsandong-gu Gyeonggi-do Goyang 10408 South Korea
Oral cancer is an aggressive malignancy with a survival rate below 50% in advanced stages due to low mutation rates, lack of molecular subtypes, and limited treatment targets. This study presents a pioneering approach... 详细信息
来源: 评论
Improving gene isoform quantification with miniQuant
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Nature biotechnology 2025年 2025 Jun 3页
作者: Haoran Li Dingjie Wang Qi Gao Puwen Tan Yunhao Wang Xiaoyu Cai Aifu Li Yue Zhao Andrew L Thurman Seyed Amir Malekpour Ying Zhang Roberta Sala Andrea Cipriano Chia-Lin Wei Vittorio Sebastiano Chi Song Nancy R Zhang Kin Fai Au Gilbert S. Omenn Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. Department of Biomedical Informatics The Ohio State University Columbus OH USA. Department of Internal Medicine University of Iowa Iowa City IA USA. Department of Obstetrics and Gynecology Stanford University Stanford CA USA. Institute for Stem Cell Biology and Regenerative Medicine Stanford University Stanford CA USA. The Jackson Laboratory for Genomic Medicine Farmington CT USA. Division of Biostatistics College of Public Health The Ohio State University Columbus OH USA. Department of Statistics and Data Science The Wharton School University of Pennsylvania Philadelphia PA USA. Gilbert S. Omenn Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. kinfai@umich.edu. Department of Biomedical Informatics The Ohio State University Columbus OH USA. kinfai@umich.edu. Department of Internal Medicine University of Iowa Iowa City IA USA. kinfai@umich.edu.
RNA sequencing has been widely applied for gene isoform quantification, but limitations exist in quantifying isoforms of complex genes accurately, especially for short reads. Here we identify genes that are difficult ...
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The largest genome-wide association study for breast cancer in Taiwanese Han population
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Breast Cancer Research and Treatment 2024年 第2期203卷 291-306页
作者: Hsu, Yu-Ching Chen, Hung-Lin Cheng, Chi-Fung Chattopadhyay, Amrita Chen, Pei-Shan Lin, Che-Chen Chiang, Hsiu-Yin Liu, Ting-Yuan Huang, Chi-Hao Kuo, Chin-Chi Chuang, Eric Y. Lu, Tzu-Pin Tsai, Fuu-Jen Bioinformatics Program Taiwan International Graduate Program National Taiwan University Taipei Taiwan Bioinformatics Program Institute of Statistical Science Taiwan International Graduate Program Academia Sinica Taipei Taiwan Institute of Health Data Analytics and Statistics Department of Public Health College of Public Health National Taiwan University Taipei Taiwan Big Data Center China Medical University Hospital Taichung Taiwan Center for Translational Genomic Research Department of Medical Research China Medical University Hospital Taichung Taiwan Million-Person Precision Medicine Initiative Department of Medical Research China Medical University Hospital Taichung Taiwan Division of Breast Surgery Department of Surgery China Medical University Hospital Taichung Taiwan Division of Nephrology Department of Internal Medicine China Medical University Hospital Taichung Taiwan Department of Medical Research China Medical University Hospital Taichung Taiwan Bioinformatics and Biostatistics Core Center of Genomic and Precision Medicine National Taiwan University Taipei Taiwan Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan Biomedical Technology and Device Research Laboratories Industrial Technology Research Institute Hsinchu Taiwan Genetic Center Department of Medical Research China Medical University Hospital Taichung Taiwan
Purpose: Breast cancer is a molecularly heterogeneous disease, and multiple genetic variants contribute to its development and prognosis. Most of previous genome-wide association studies (GWASs) and polygenic risk sco... 详细信息
来源: 评论
Author Correction: Systematic dissection of tumor-normal single-cell ecosystems across a thousand tumors of 30 cancer types
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Nature communications 2025年 第1期16卷 2806页
作者: Junho Kang Jun Hyeong Lee Hongui Cha Jinhyeon An Joonha Kwon Seongwoo Lee Seongryong Kim Mert Yakup Baykan So Yeon Kim Dohyeon An Ah-Young Kwon Hee Jung An Se-Hoon Lee Jung Kyoon Choi Jong-Eun Park Graduate School of Medical Science and Engineering Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. Department of Bio and Brain Engineering Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. Division of Hematology-Oncology Department of Medicine Samsung Medical Center Sungkyunkwan University School of Medicine Seoul Republic of Korea. Division of Cancer Data Science National Cancer Center Bioinformatics Branch Goyang Republic of Korea. Department of Pathology CHA Bundang Medical Center CHA University Seongnam-si Republic of Korea. Division of Hematology-Oncology Department of Medicine Samsung Medical Center Sungkyunkwan University School of Medicine Seoul Republic of Korea. shlee119@skku.edu. Department of Health Sciences and Technology Samsung Advanced Institute of Health Science and Technology Sungkyunkwan University School of Medicine Seoul Republic of Korea. shlee119@skku.edu. Department of Bio and Brain Engineering Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. jungkyoon@kaist.ac.kr. Penta Medix Co. Ltd. Seongnam-si Gyeonggi-do Republic of Korea. jungkyoon@kaist.ac.kr. Graduate School of Medical Science and Engineering Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. jp24@kaist.ac.kr. Biomedical Research Center Korea Advanced Institute of Science and Technology Daejeon Republic of Korea. jp24@kaist.ac.kr.
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Are dogs not susceptible to retroviral infections?
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Animal Diseases 2024年 第3期4卷 217-223页
作者: Jorge Casseb João Henrique Campos Luciano Rodrigo Lopes Laboratory of Investigation in Dermatology and Immunodefciencies Department of DermatologyUniversity of São Paulo Medical SchoolSão PauloSPBrazil Igen-Institute of Immunogenetics São PauloSPBrazil Bioinformatics and Biomedical Data Science Division Health Informatics DepartmentUniversidade Federal de São Paulo–UNIFESP.Rua Botucatu 862Prédio Leal PradotérreoVila ClementinoCEP 04023-062São PauloSPBrazil
Retroviruses have been proven to cause infections and diseases in a series of mammalian hosts but not in ***,this letter discussed the dog susceptibility to retrovirus infection,encompassing arguments to understand wh... 详细信息
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From mechanism to medicine: The progress and potential of epigenetics in osteoarthritis
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Osteoarthritis and Cartilage Open 2025年 第3期7卷 100621-100621页
作者: Roberts, Jack B. Rockel, Jason S. Mulders, Rick Capellini, Terence D. Appleton, C. Thomas Phanstiel, Douglas H. Lories, Rik Geurts, Jeroen Ali, Shabana Amanda Bhutani, Nidhi Stone, Laura Cruz-Almeida, Yenisel Jurisica, Igor Boer, Cindy G. Ramos, Yolande F.M. Rice, Sarah J. Kapoor, Mohit Biosciences Institute Newcastle University Newcastle upon Tyne United Kingdom Division of Orthopedics Osteoarthritis Research Program Schroeder Arthritis Institute University Health Network and Krembil Research Institute University Health Network Toronto ON Canada Department of Medical Biophysics and Computer Science University of Toronto Toronto ON Canada Department of Biomedical Data Sciences Section Molecular Epidemiology Leiden University Medical Center Leiden Netherlands Department of Human Evolutionary Biology Harvard University Cambridge MA United States Bone and Joint Institute and Department of Medicine Schulich School of Medicine and Dentistry Western University London Canada Curriculum in Bioinformatics and Computational Biology University of North Carolina Chapel Hill NC United States Laboratory of Tissue Homeostasis and Disease Skeletal Biology and Engineering Research Centre Department of Development and Regeneration KU Leuven Leuven Belgium Division of Rheumatology University Hospitals Leuven Leuven Belgium Rheumatology Department of Musculoskeletal Medicine Lausanne University Hospital and University of Lausanne (CHUV-UNIL) Lausanne Switzerland Bone and Joint Center Henry Ford Health + Michigan State University Health Sciences Detroit MI United States Department of Orthopaedic Surgery Stanford School of Medicine Stanford CA United States Department of Anesthesiology School of Medicine University of Minnesota Minneapolis MN United States Pain Research and Intervention Center of Excellence (PRICE) at the University of Florida Gainesville FL United States Department of Internal Medicine Genomics Medicine Center Erasmus MC University Medical Center Rotterdam Netherlands Department of Laboratory Medicine and Pathobiology University of Toronto Toronto ON Canada Department of Surgery University of Toronto Toronto ON Canada
Objective: Osteoarthritis (OA) is a chronic, degenerative disease of the articular joints. The disease presents an enormous clinical and economic burden globally, due in part to the lack of disease modifying therapies...
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Correction: Real-world effectiveness and safety of trastuzumab-deruxtecan in Japanese patients with HER2-positive advanced gastric cancer (EN-DEAVOR study)
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Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association 2025年 第1期28卷 62页
作者: Hisato Kawakami Koki Nakanishi Akitaka Makiyama Hirotaka Konishi Satoshi Morita Yukiya Narita Naotoshi Sugimoto Keiko Minashi Motohiro Imano Rin Inamoto Yasuhiro Kodera Hiroki Kume Keita Yamaguchi Wataru Hashimoto Kei Muro Department of Medical Oncology Kindai University Faculty of Medicine Osakasayama Japan. kawakami_h@med.kindai.ac.jp. Department of Gastroenterological Surgery Nagoya University Graduate School of Medicine Nagoya Japan. Cancer Center Gifu University Hospital Gifu Japan. Division of Digestive Surgery Kyoto Prefectural University of Medicine Kyoto Japan. Department of Biomedical Statistics and Bioinformatics Kyoto University Graduate School of Medicine Kyoto Japan. Department of Clinical Oncology Aichi Cancer Center Hospital Nagoya Japan. Department of Genetic Oncology Osaka International Cancer Institute Osaka Japan. Division of Gastroenterology Chiba Cancer Center Chiba Japan. Department of Surgery Kindai University Faculty of Medicine Osakasayama Japan. Department of Gastroenterology Saitama Cancer Center Saitama Japan. Oncology Medical Science Department I Daiichi Sankyo Co. Ltd. Tokyo Japan. Data Intelligence Department Daiichi Sankyo Co. Ltd. Tokyo Japan.
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