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检索条件"机构=Bioinformatics and Genomics Program"
330 条 记 录,以下是321-330 订阅
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The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
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SCIENCE 2009年 第5926期324卷 522-528页
作者: Elsik, Christine G. Tellam, Ross L. Worley, Kim C. Gibbs, Richard A. Abatepaulo, Antonio R. R. Abbey, Colette A. Adelson, David L. Aerts, Jan Ahola, Virpi Alexander, Lee Alioto, Tyler Almeida, Iassudara G. Amadio, Ariel F. Anatriello, Elen Antonarakis, Stylianos E. Anzola, Juan M. Astashyn, Alex Bahadue, Suria M. Baldwin, Cynthia L. Barris, Wes Baxter, Rebecca Bell, Stephanie Nicole Bennett, Anna K. Bennett, Gary L. Biase, Fernando H. Boldt, Clayton R. Bradley, Daniel G. Brinkman, Fiona S. L. Brinkmeyer-Langford, Candice L. Brown, Wendy C. Brownstein, Michael J. Buhay, Christian Caetano, Alexandre R. Camara, Francisco Carroll, Jeffrey A. Carvalho, Wanessa A. Casey, Theresa Cervelatti, Elaine P. Chack, Joseph Chacko, Elsa Chandrabose, Mimi M. Chapin, Jennifer E. Chapple, Charles E. Chen, Hsiu-Chuan Chen, Lin Cheng, Ye Cheng, Ze Childers, Christopher P. Chitko-McKown, Carol G. Chiu, Readman Choi, Jungwoo Chrast, Jacqueline Colley, Adam J. Connelley, Tomothy Cree, Andy Curry, Stacey Dalrymple, Brian Diep Dao, Marvin Davis, Clay de Oliveira, Carlo J. F. de Miranda Santos, Isabel K. F. de Campos, Tatiana A. Deobald, Heather Devinoy, Eve Dickins, C. Michael Yan, Ding Dinh, Huyen H. De Donato, Marcos Donohue, Kaitlin E. Donthu, Ravikiran Dovc, Peter Dugan-Rocha, Shannon Durbin, K. James Eberlein, Annett Edgar, Robert C. Egan, Amy Eggen, Andre Eichler, Evan E. Elhaik, Eran Ellis, Shirley A. Elnitski, Laura Ermolaeva, Olga Eyras, Eduardo Fitzsimmons, Carolyn J. Fowler, Gerald R. Franzin, Alessandra M. Fritz, Krista Gabisi, Ramatu Ayiesha Garcia, Gustavo R. Garcia, Jose Fernando Genini, Sem Gerlach, Daniel German, J. Bruce Gilbert, James G. R. Gill, Clare A. Gladney, Cody J. Glass, Elizabeth J. Goodell, Jason Grant, Jason R. Graur, Dan Greaser, Marion L. Green, Jonathan A. Green, Ronnie D. Guan, Leluo Guigo, Roderic Hadsell, Darryl L. Hagen, Darren E. Hakimov, Hatam A. Halgren, Rob Hamernik, Debora L. Hamilton, Cerissa Harhay, Gregory P. Harrow, Jennifer L. Hart, Elizabeth A. Hastings, Nicola Havlak, Paul Henrichsen, Charl Georgetown Univ Dept Biol 406 Reiss37th & O St NW Washington DC 20057 USA CSIRO Livestock Ind St Lucia Qld 4067 Australia Baylor Coll Med Dept Mol & Human Genet Human Genome Sequencing Ctr Houston TX 77030 USA Washington Univ Sch Med Genome Ctr St Louis MO 63108 USA Texas A&M Univ Dept Anim Sci College Stn TX 77843 USA Univ Adelaide Sch Mol Biomed & Sci Sch Agr Food & Wine Adelaide SA 5005 Australia Univ Washington Dept Genome Sci Seattle WA 98195 USA Howard Hughes Med Inst Seattle WA 98195 USA Natl Human Genome Res Inst Natl Inst Hlth Rockville MD 20878 USA Univ Pompeu Fabra Ctr Genomic Regulation Grp Recerca Informatica Biomed Inst Municipal Invest Med E-08003 Barcelona Spain USDA Cooperative State Res Educ & Extension Serv Washington DC 20250 USA USDA Agr Res Serv Natl Program Staff Beltsville MD 20705 USA Univ Illinois Urban Champaign Dept Anim Sci Urbana IL 61801 USA Univ Illinois Urban Champaign Inst Genomic Biol Urbana IL 61801 USA Simon Fraser Univ Dept Mol Biol Biochem Burnaby BC V5A 1S6 Canada Univ Sydney Fac Vet Sci Sydney NSW 2006 Australia Univ Lausanne Ctr Integrative Genomics CH-1015 Lausanne Switzerland Baylor Coll Med Dept Pediat Nutr USDA Agr Res Serv Childrens Nutr Res Ctr Houston TX 77030 USA Texas A&M Univ Dept Vet Integrative Biosci College Stn TX 77843 USA Univ Geneva Med Sch Dept Genetic Med & Dev CH-1211 Geneva Switzerland Swiss Inst Bioinformatics CH-1211 Geneva Switzerland Imperial Coll S Kensington Campus Div Mol Biosci London SW7 2AZ England Texas A&M Univ Dept Vet Pathobiol College Stn TX 77843 USA Natl Inst Hlth Natl Lib Med Natl Ctr Biotech Information Bethesda MD 20892 USA Wellcome Trust Sanger Inst Hinxton Informatics Dept Cambridge CB10 1HH England Univ London Royal Holloway Egham Dept Comp Sci Surrey TW20 0EX England Univ Houston Dept Biol & Biochem Houston TX 77204 USA Johns Hopkins Univ Sch Med McKusick Nathans Inst Genetic Med Baltimore MD 21205 USA 45 Monterey Dr Tiburon CA 94
To understand the biology and evolution of ruminants, the cattle genome was sequenced to about sevenfold coverage. The cattle genome contains a minimum of 22,000 genes, with a core set of 14,345 orthologs shared among... 详细信息
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Calculation of splicing potential from the alternative splicing mutation database
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BMC Research Notes 2008年 第1期1卷 1-6页
作者: Bechtel, Jason M. Rajesh, Preeti Ilikchyan, Irina Deng, Ying Mishra, Pankaj K. Wang, Qi Wu, Xiaochun Afonin, Kirill A. Grose, William E. Wang, Ye Khuder, Sadik Fedorov, Alexei Program in Bioinformatics and Proteomics/Genomics University of Toledo Health Science Campus Toledo OH 43614 United States Dept. of Medical Microbiology and Immunology University of Toledo Health Science Campus Toledo OH 43614 United States Dept. of Basic Pharmaceutical Sciences South Carolina College of Pharmacy University of South Carolina Columbia SC 29208 United States Department of Biological Sciences Bowling Green State University Bowling Green OH 43403 United States College of Engineering University of Toledo Toledo OH 43606 United States Dept. of Medicine University of Toledo Health Science Campus Toledo OH 43614 United States
Background. The Alternative Splicing Mutation Database (ASMD) presents a collection of all known mutations inside human exons which affect splicing enhancers and silencers and cause changes in the alternative splicing... 详细信息
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The Alternative Splicing Mutation Database: A hub for investigations of alternative splicing using mutational evidence
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BMC Research Notes 2008年 第1期1卷 1-7页
作者: Bechtel, Jason M. Rajesh, Preeti Ilikchyan, Irina Deng, Ying Mishra, Pankaj K. Wang, Qi Wu, Xiaochun Afonin, Kirill A. Grose, William E. Wang, Ye Khuder, Sadik Fedorov, Alexei Program in Bioinformatics and Proteomics/Genomics University of Toledo Health Science Campus Toledo OH 43614 United States Dept. of Medical Microbiology and Immunology University of Toledo Health Science Campus Toledo OH 43614 United States Dept. of Basic Pharmaceutical Sciences South Carolina College of Pharmacy University of South Carolina Columbia SC 29208 United States Department of Biological Sciences Bowling Green State University Bowling Green OH 43403 United States College of Engineering University of Toledo Toledo OH 43606 United States Dept. of Medicine University of Toledo Health Science Campus Toledo OH 43614 United States
Background. Some mutations in the internal regions of exons occur within splicing enhancers and silencers, influencing the pattern of alternative splicing in the corresponding genes. To understand how these sequence c... 详细信息
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Correcting base-assignment errors in repeat regions of shotgun assembly
Correcting base-assignment errors in repeat regions of shotg...
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作者: Zhi, Degui Keich, Uri Pevzner, Pavel Heber, Steffen Tang, Haixu Bioinformatics Program University of California San Diego San Diego CA 92093 Department of Computer Science 4130 Upson Hall Cornell University Ithaca NY 14853 Department of Computer Science and Engineering University of California San Diego San Diego CA 92093 North Carolina State University Raleigh NC 27695-7566 School of Informatics Center for Genomics and Bioinformatics Indiana University Bloomington IN 47408
Accurate base-assignment in repeat regions of a whole genome shotgun assembly is an unsolved problem. Since reads in repeat regions cannot be easily attributed to a unique location in the genome, current assemblers ma... 详细信息
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The unique probe selector: A comprehensive web service for probe design and oligonucleotide arrays
The unique probe selector: A comprehensive web service for p...
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6th International Conference on bioinformatics, InCoB 2007
作者: Chen, Shu-Hwa Lo, Chen-Zen Tsai, Ming-Chi Hsiung, Chao A. Lin, Chung-Yen Stem Cell/Regenerative Medicine Program Genomics Research Center Academia Sinica. No. 128 Academia Rd. Taipei 115 Taiwan Institute of Information Science Academia Sinica No. 128 Academia Rd. Taipei 115 Taiwan Division of Biostatistics and Bioinformatics National Health Research Institutes No. 35 Keyan Rd. Zhunan Miaoli County 350 Taiwan Institute of Ishery Science College of Life Science National Taiwan University Roosevelt Rd. Taipei Taiwan
Background: Nucleic acid hybridization, a fundamental technique in molecular biology, can be modified into very effective and sensitive methods for detecting particular targets mixed with millions of non-target sequen... 详细信息
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The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa
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BMC Physiology 2006年 第1期6卷 1-20页
作者: Saban, Marcia R. Hellmich, Helen L. Turner, Mary Nguyen, Ngoc-Bich Vadigepalli, Rajanikanth Dyer, David W. Hurst, Robert E. Centola, Michael Saban, Ricardo Department of Physiology University Oklahoma Health Sciences Center Oklahoma City OK United States Department of Anesthesiology University of Texas Medical Branch Galveston TX United States Oklahoma Medical Research Foundation (OMRF) Arthritis and Immunology Research Program Microarray Core Facility Oklahoma City OK United States Daniel Baugh Institute for Functional Genomics and Computational Biology Department of Pathology Anatomy and Cell Biology Thomas Jefferson University Philadelphia United States Department of Microbiology and Immunology Laboratory for Genomics and Bioinformatics Oklahoma University Health Sciences Center Oklahoma City OK United States Department of Urology University Oklahoma Health Sciences Center Oklahoma City OK United States Cellular and Structural Biology University of Texas Health Science Center at San Antonio San Antonio TX United States
Background: An organ such as the bladder consists of complex, interacting set of tissues and cells. Inflammation has been implicated in every major disease of the bladder, including cancer, interstitial cystitis, and ...
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MyLibrary at LANL: proximity and semi-metric networks for a collaborative and recommender Web service
MyLibrary at LANL: proximity and semi-metric networks for a ...
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IEEE WIC ACM International Conference on Web Intelligence (WI)
作者: L.M. Rocha T. Simas A. Rechtsteiner M. Di Giacomo R. Luce School of Informatics and Cognitive Science Program Indiana University Bloomington IN USA Center for Genomics and Bioinformatics Indiana University Bloomington IN USA Research Library Los Alamos National Laboratory Los Alamos NM USA
We describe a network approach to building recommendation systems for a Web service. We employ two different types of weighted graphs in our analysis and development: proximity graphs, a type of fuzzy graphs based on ... 详细信息
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Remarkable sequence signatures in archaeal genomes
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Archaea 2003年 第3期1卷 185-190页
作者: Fadiel, Ahmed Lithwick, Stuart Ganji, Gopi Scherer, Stephen W. Center for Applied Genomics Hospital for Sick Children Toronto Ont. M5G 1Z8 Canada Bioinformatics Supercomputing Centre Genom. and Genetics Biology Program Hospital for Sick Children Toronto Ont. M5G 1Z8 Canada
Complete archaeal genomes were probed for the presence of long (≥ 25 bp) oligonucleotide repeats (words). We detected the presence of many words distributed in tandem with narrow ranges of periodicity (i.e., spacer l... 详细信息
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Contributory presentations/posters
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Journal of Biosciences 1999年 第1期24卷 33-198页
作者: N. Manoj V. R. Srinivas A. Surolia M. Vijayan K. Suguna R. Ravishankar R. Schwarzenbacher K. Zeth Diederichs G. M. Kostner A. Gries P. Laggner R. Prassl Madhusudan Pearl Akamine Nguyen-huu Xuong Susan S. Taylor M. Bidva Sagar K. Saikrishnan S. Roy K. Purnapatre P. Handa U. Varshney B. K. Biswal N. Sukumar J. K. Mohana Rao A. Johnson Vasantha Pattabhi S. Sri Krishna Mira Sastri H. S. Savithri M. R. N. Murthy Bindu Pillai Kannan M. V. Hosur Mukesh Kumar Swati Patwardhan K. K. Kannan B. Padmanabhaa S. Sasaki-Sugio M. Nukaga T. Matsuzaki S. Karthikevan S. Sharma A. K. Sharma M. Paramasivam P. Kumar J. A. Khan S. Yadav A. Srinivasan T. P. Singh S. Gourinath Neelima Alam A. Srintvasan Vikas Chandra Punit Kaur Ch. Betzel S. Ghosh A. K. Bera S. Bhattacharya S. Chakraborty A. K. Pal B. P. Mukhopadhyay I. Dey U. Haldar Asok Baneriee Jozef Sevcik Adriana Solovicova K. Sekar M. Sundaralingam N. Genov Dong-cai Liang Tao Jiang Ji-ping Zhang Wen-rui Chang Wolfgang Jahnke Marcel Blommers S. C. Panchal R. V. Hosur Bindu Pillay Puniti Mathur S. Srivatsun Ratan Mani Joshi N. R. Jaganathan V. S. Chauhan H. S. Atreya S. C. Sahu K. V. R. Chary Girjesh Govil Elisabeth Adjadj Éric Quinjou Nadia Izadi-Pruneyre Yves Blouquit Joël Mispelter Bernadette Heyd Guilhem Lerat Philippe Milnard Michel Desmadreil Y. Lin B. D. Nageswara Rao Vidva Raghunathan Mei H. Chau Prashant Pesais Sudha Srivastava Evans Coutinho Anil Saran Leizl F. Sapico Jayson Gesme Herbert Lijima Raymond Paxton Thamarapu Srikrishnan C. R. Grace G. Nagenagowda A. M. Lynn Sudha M. Cowsik Sarata C. Sahu S. Chauhan A. Bhattacharya G. Govil Anil Kumar Maurizio Pellecchia Erik R. P. Zuiderweg Keiichi Kawano Tomoyasu Aizawa Naoki Fujitani Yoichi Hayakawa Atsushi Ohnishi Tadayasu Ohkubo Yasuhiro Kumaki Kunio Hikichi Katsutoshi Nitta V. Rani Parvathy R. M. Kini Takumi Koshiba Yoshihiro Kobashigawa Min Yao Makoto Demura Astushi Nakagawa Isao Tanaka Kunihiro Kuwajima Jens Linge Seán O. Donoghue Michael Nilges G. Chakshusmathi Girish S. Ratnaparkhi P. K. Madhu R. Varadarajan C. Tetreau Molecular Biophysics Unit Indian Institute of Science Bangalore India Austrian Academy of Sciences Institute of Biophysics and X-ray Structure Research Graz Austria Faculty of Biology University of Konstanz Germany Institute of Medical Biochemistry University of Graz Austria Howard Huges Medical Institute Department of Chemistry & Biochemistry University of California La Jolla USA Department of Chemistry & Biochemistry University of California San Diego La Jolla USA Molecular Biophysics Unit India Department of Microbiology &Cell Biology Indian Institute of Science Bangalore India Macromolecular Structure Laboratory NCI - Frederick Cancer Research and Development Center ABL - Basic Research Program Frederick USA Department of Crystallography and Biophysics University of Madras Chennai Biochemistry Department Indian Institute of Science Bangalore India Condensed Matter Physics Division B.A.R.C. Trombay Mumbai Condensed Matter Physics Division Bhabha Atomic Research Centre Trombay Mumbai IMCB The University of Tokyo Tokyo Japan Mitsubishi Chemical Corporation Yokohama Research Center Yokohama Japan Faculty of Pharmaceutical Sciences Chiba University Chiba Japan Department of Biophysics All India Institute of Medical Sciences New Delhi India Department of Biophysics All India Institute of Medical sciences New Delhi India Institüt Physiologische Chemie Hamburg Germany Biophysics Department Bose Institute Calcutta India Slovak Academy of Sciences Institute of Molecular Biology Bratislava Slovakia Indian Institute of Science Bioinformatics Centre Bangalore Departments of Chemistry and Biochemistry Biological Macromolecular Structure Center USA Bulgarian Academy of Sciences Institute of Organic Chemistry Sofia Bulgaria Chinese Academy of Sciences Institute of Biophysics Beijing China Novartis Pharma AG Preclinical Research Basel Switzerland Department of Chemical Sciences Tata Institute of Fundamental Research Mumbai India Solid State Physics Div
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Graph Artificial Intelligence in Medicine
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Biomedical Data Science 1000年 第1期7卷 345-368页
作者: Ruth Johnson Michelle M. Li Ayush Noori Owen Queen Marinka Zitnik 1Department of Biomedical Informatics Harvard Medical School Boston Massachusetts USA email: marinka@hms.harvard.edu 2Berkowitz Family Living Laboratory Harvard Medical School Boston Massachusetts USA 3Bioinformatics and Integrative Genomics Program Harvard Medical School Boston Massachusetts USA 4Department of Computer Science Harvard John A. Paulson School of Engineering and Applied Sciences Allston Massachusetts USA 5Broad Institute of MIT and Harvard Cambridge Massachusetts USA 7Kempner Institute for the Study of Natural and Artificial Intelligence Harvard University Allston Massachusetts USA 6Harvard Data Science Initiative Cambridge Massachusetts USA
In clinical artificial intelligence (AI), graph representation learning, mainly through graph neural networks and graph transformer architectures, stands out for its capability to capture intricate relationships and s...
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