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arXiv 2021年

作者： George, Ashish B. Korolev, Kirill S. Department of Physics Boston University BostonMA02215 United States Biological Design Center Boston University BostonMA02215 United States Carl R. Woese Institute for Genomic Biology Department of Plant Biology University of Illinois at Urbana-Champaign UrbanaIL61801 United States Graduate Program in Bioinformatics Boston University BostonMA02215 United States

Assembling optimal microbial communities is key for various applications in biofuel production, agriculture, and human health. Finding the optimal community is challenging because the number of possible communities grows exponentially with the number of species, and so an exhaustive search cannot be performed even for a dozen species. A heuristic search that improves community function by adding or removing one species at a time is more practical, but it is unknown whether this strategy can discover an optimal or nearly optimal community. Using consumer-resource models with and without cross-feeding, we investigate how the efficacy of search depends on the distribution of resources, niche overlap, cross-feeding, and other aspects of community ecology. We show that search efficacy is determined by the ruggedness of the appropriately-defined ecological landscape. We identify specific ruggedness measures that are both predictive of search performance and robust to noise and low sampling density. The feasibility of our approach is demonstrated using experimental data from a soil microbial community. Overall, our results establish the conditions necessary for the success of the heuristic search and provide concrete design principles for building high-performing microbial consortia. © 2021, CC BY-NC-ND.

关键词： Microorganisms

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Accurate de novo design of membrane-traversing macrocycles

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四川生理科学杂志 2022年第8期44卷 1474-1474页

作者： Gaurav Bhardwaj Institute for Protein Design University of Washington Seattle WA 98195 USA Department of Medicinal Chemistry University of Washington Seattle WA 98195 USA Biological Physics Structure and Design program University of Washington Seattle WA 98195 USA Department of Biochemistry University of Washington Seattle WA 98195 USA Molecular Cell and Biology program University of Washington Seattle WA 98195 USA Institute for Molecular Bioscience Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science The University of Queensland Brisbane QLD 4072 Australia Department of Chemistry and Chemical Biology and Center for Biotechnology and Interdisciplinary Sciences Rensselaer Polytechnic Institute Troy NY 12180 USA Molecular Engineering and Sciences Program University of Washington Seattle WA 98195 USA Departamento de Quίmica Fίsica Universidad de Valencia Avenida Dr. Moliner 50 Burjassot 46100 Valencia Spain Department of Medicine Division of Allergy and Infectious Disease University of Washington Seattle WA USA Department of Chemistry and Biochemistry University of California-Los Angeles Los Angeles CA USA Takeda Pharmaceuticals Inc. Cambridge MA USA Howard Hughes Medical Institute University of Washington Seattle WA 98195 USA

We use computational design coupled with experimental characterization to systematically investigate the design principles for macrocycle membrane permeability and oral *** designed 1846-12 residue macrocycles with a wide range of predicted structures containing noncanonical backbone modifications and experimentally determined structures of 35;29 are very close to the computational *** such control,we show that membrane permeability can be systematically achieved by ensuring all amide(NH)groups are engaged in internal hydrogen bonding interactions.84 designs over the 6-12 residue size range cross membranes with an apparent permeability greater than 1×10^(-6)cm/s.

关键词： residue cycles backbone

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Publisher Correction: Multistate and functional protein design using RoseTTAFold sequence space diffusion

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Nature biotechnology 2024年 2024 Oct 7页

作者： Sidney Lyayuga Lisanza Jacob Merle Gershon Samuel W K Tipps Jeremiah Nelson Sims Lucas Arnoldt Samuel J Hendel Miriam K Simma Ge Liu Muna Yase Hongwei Wu Claire D Tharp Xinting Li Alex Kang Evans Brackenbrough Asim K Bera Stacey Gerben Bruce J Wittmann Andrew C McShan David Baker Department of Biochemistry University of Washington Seattle WA USA. Institute for Protein Design University of Washington Seattle WA USA. Graduate Program in Biological Physics Structure and Design University of Washington Seattle WA USA. Department of Molecular Engineering University of Washington Seattle WA USA. Molecular & Cellular Biology Medical Scientist Training Program University of Washington Seattle WA USA. Faculty of Engineering Sciences Heidelberg University Heidelberg Germany. School of Chemistry and Biochemistry Georgia Institute of Technology Atlanta GA USA. Office of the Chief Scientific Officer Microsoft Redmond WA USA. Department of Biochemistry University of Washington Seattle WA USA. dabaker@uw.edu. Institute for Protein Design University of Washington Seattle WA USA. dabaker@uw.edu. Howard Hughes Medical Institute University of Washington Seattle WA USA. dabaker@uw.edu.

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Publisher Correction: Modular and tunable biological feedback control using a de novo protein switch

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Nature 2020年第7798期579卷 E8页

作者： Andrew H Ng Taylor H Nguyen Mariana Gómez-Schiavon Galen Dods Robert A Langan Scott E Boyken Jennifer A Samson Lucas M Waldburger John E Dueber David Baker Hana El-Samad Department of Biochemistry and Biophysics University of California San Francisco San Francisco CA USA. Department of Bioengineering University of California Berkeley Berkeley CA USA. The UC Berkeley-UCSF Graduate Program in Bioengineering UC Berkeley Berkeley CA USA. Cell Design Initiative University of California San Francisco CA USA. Department of Biochemistry University of Washington Seattle WA USA. Institute for Protein Design University of Washington Seattle WA USA. Graduate Program in Biological Physics Structure and Design University of Washington Seattle WA USA. Howard Hughes Medical Institute University of Washington Seattle WA USA. Department of Biochemistry and Biophysics University of California San Francisco San Francisco CA USA. hana.el-samad@ucsf.edu. Cell Design Initiative University of California San Francisco CA USA. hana.el-samad@ucsf.edu. Chan-Zuckerberg Biohub San Francisco CA USA. hana.el-samad@ucsf.edu.

An amendment to this paper has been published and can be accessed via a link at the top of the paper.

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CACHE Challenge #2: Targeting the RNA Site of the SARS-CoV-2 Helicase Nsp13

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Journal of chemical information and modeling 2025年

作者： Oleksandra Herasymenko Madhushika Silva Abd Al-Aziz A Abu-Saleh Ayaz Ahmad Jesus Alvarado-Huayhuaz Oscar E A Arce Roly J Armstrong Cheryl Arrowsmith Kelly E Bachta Hartmut Beck Denes Berta Mateusz K Bieniek Vincent Blay Albina Bolotokova Philip E Bourne Marko Breznik Peter J Brown Aaron D G Campbell Emanuele Carosati Irene Chau Daniel J Cole Ben Cree Wim Dehaen Katrin Denzinger Karina Dos Santos Machado Ian Dunn Prasannavenkatesh Durai Kristina Edfeldt Aled Edwards Darren Fayne Daniel Felfoldi Kallie Friston Pegah Ghiabi Elisa Gibson Judith Günther Anders Gunnarsson Alexander Hillisch Douglas R Houston Jan Halborg Jensen Rachel J Harding Kate S Harris Laurent Hoffer Anders Hogner Joshua T Horton Scott Houliston Judd F Hultquist Ashley Hutchinson John J Irwin Marko Jukič Shubhangi Kandwal Andrea Karlova Vittorio L Katis Ryan P Kich Dmitri Kireev David Koes Nicole L Inniss Uta Lessel Sijie Liu Peter Loppnau Wei Lu Sam Martino Miles McGibbon Jens Meiler Akhila Mettu Sam Money-Kyrle Rocco Moretti Yurii S Moroz Charuvaka Muvva Joseph A Newman Leon Obendorf Brooks Paige Amit Pandit Keunwan Park Sumera Perveen Rachael Pirie Gennady Poda Mykola Protopopov Vera Pütter Federico Ricci Natalie J Roper Edina Rosta Margarita Rzhetskaya Yogesh Sabnis Karla J F Satchell Frederico Schmitt Kremer Thomas Scott Almagul Seitova Casper Steinmann Valerij Talagayev Olga O Tarkhanova Natalie J Tatum Dakota Treleaven Adriano Velasque Werhli W Patrick Walters Xiaowen Wang Jude Wells Geoffrey Wells Yvonne Westermaier Gerhard Wolber Lars Wortmann Jixian Zhang Zheng Zhao Shuangjia Zheng Matthieu Schapira Structural Genomics Consortium University of Toronto Toronto Ontario M5G 1L7 Canada. School of Natural and Environmental Sciences Newcastle University Newcastle Upon Tyne NE1 7RU United Kingdom. Center for Computational Sciences Universidade Federal do Rio Grande - FURG Rio Grande 96201-900 Brazil. Department of Medical Biophysics University of Toronto Toronto Ontario M5G 1L7 Canada. Princess Margaret Cancer Centre University Health Network Toronto Ontario M5G 2C4 Canada. Division of Infectious Diseases Department of Medicine Northwestern University Feinberg School of Medicine Chicago Illinois 60611 United States. Bayer AG Drug Discovery Sciences Wuppertal 42096 Germany. Department of Physics and Astronomy University College London London WC1E 6BS United Kingdom. Department of Microbiology and Environmental Toxicology University of California Santa Cruz Santa Cruz California 95064 United States. School of Data Science University of Virginia Charlottesville Virginia 22904 United States of America. Computational Molecular Design Institute of Pharmacy Freie Universität Berlin Königin-Luisestr. 2 + 4 Berlin 14195 Germany. UNC Eshelman School of Pharmacy University of North Carolina at Chapel Hill Chapel Hill North Carolina 27599 United States. Department of Chemistry and Pharmaceutical Sciences University of Trieste Trieste 34127 Italy. Department of Organic Chemistry Faculty of Chemical Technology University of Chemistry and Technology Prague Technická 5 Prague 6 166 28 Czech Republic. Department of Informatics and Chemistry Faculty of Chemical Technology University of Chemistry and Technology Prague Technická 5 Prague 6 166 28 Czech Republic. Department of Computational and Systems Biology University of Pittsburgh Pittsburgh Pennsylvania 15261 United States. Korea Institute of Science and Technology Seongbuk-gu Seoul 02792 Republic of Korea. Structural Genomics Consortium Department of Medicine Karolinska University Hospital and Karolinska Institu

A critical assessment of computational hit-finding experiments (CACHE) challenge was conducted to predict ligands for the SARS-CoV-2 Nsp13 helicase RNA binding site, a highly conserved COVID-19 target. Twenty-three participating teams comprised of computational chemists and data scientists used protein structure and data from fragment-screening paired with advanced computational and machine learning methods to each predict up to 100 inhibitory ligands. Across all teams, 1957 compounds were predicted and were subsequently procured from commercial catalogs for biophysical assays. Of these compounds, 0.7% were confirmed to bind to Nsp13 in a surface plasmon resonance assay. The six best-performing computational workflows used fragment growing, active learning, or conventional virtual screening with and without complementary deep-learning scoring functions. Follow-up functional assays resulted in identification of two compound scaffolds that bound Nsp13 with a below 10 μM and inhibited helicase activity. Overall, CACHE #2 participants were successful in identifying hit compound scaffolds targeting Nsp13, a central component of the coronavirus replication-transcription complex. Computational design strategies recurrently successful across the first two CACHE challenges include linking or growing docked or crystallized fragments and docking small and diverse libraries to train ultrafast machine-learning models. The CACHE #2 competition reveals how crowd-sourcing ligand prediction efforts using a distinct array of approaches followed with critical biophysical assays can result in novel lead compounds to advance drug discovery efforts.

关键词： Lead compounds

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Complementary Approaches to Dissecting Mechanisms of Protein-mediated Membrane Fusion

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Microscopy and Microanalysis 2015年第S3期21卷 1279-1280页

作者： Long Gui Natalie K. Garcia Miklos Guttman Jamie L. Ebner Kelly K. Lee Department of Medicinal Chemistry University of Washington Seattle WA USA Biological Physics Structure and Design Program University of Washington Seattle WA USA

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Erratum for Gui et al., Electron Tomography Imaging of Surface Glycoproteins on Human Parainfluenza Virus 3: Association of Receptor Binding and Fusion Proteins before Receptor Engagement

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mBio 2016年第1期7卷 e01928-15页

作者： Long Gui Eric Jurgens Jamie L Ebner Matteo Porotto Anne Moscona Kelly K Lee Department of Medicinal Chemistry University of Washington Seattle Washington USA Biological Physics Structure and Design Graduate Program University of Washington Seattle Washington USA. Department of Pediatrics Weill Medical College of Cornell University New York New York USA. Department of Medicinal Chemistry University of Washington Seattle Washington USA. Department of Pediatrics Weill Medical College of Cornell University New York New York USA kklee@uw.edu Anm2047@med.cornell.edu Map2028@med.cornell.edu. Department of Pediatrics Weill Medical College of Cornell University New York New York USA Department of Microbiology and Immunology Weill Medical College of Cornell University New York New York USA kklee@uw.edu Anm2047@med.cornell.edu Map2028@med.cornell.edu. Department of Medicinal Chemistry University of Washington Seattle Washington USA Biological Physics Structure and Design Graduate Program University of Washington Seattle Washington USA Department of Microbiology University of Washington Seattle Washington USA kklee@uw.edu Anm2047@med.cornell.edu Map2028@med.cornell.edu.

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Changing life expectancy in European countries 1990–2021: a subanalysis of causes and risk factors from the Global Burden of Disease Study 2021

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The Lancet Public Health 2025年第3期10卷 e172-e188页

作者： Steel, Nicholas Bauer-Staeb, Clarissa Maria Mercedes Ford, John A. Abbafati, Cristiana Abdalla, Mohammed Altigani Abdelkader, Atef Abdi, Parsa Zuñiga, Roberto Ariel Abeldaño Abiodun, Olugbenga Olusola Abolhassani, Hassan Abu-Gharbieh, Eman Abukhadijah, Hana J. Abu-Zaid, Ahmed Addo, Isaac Yeboah Addolorato, Giovanni Adekanmbi, Victor Adetunji, Juliana Bunmi Adeyeoluwa, Temitayo Esther Agardh, Emilie E. Agyemang-Duah, Williams Ahmad, Danish Ahmed, Ayman Ahmed, Syed Anees Akinosoglou, Karolina Akkaif, Mohammed Ahmed Al Awaidy, Salah Al Hasan, Syed Mahfuz Al Zaabi, Omar Ali Mohammed Aldridge, Robert W. Algammal, Abdelazeem M. Al-Gheethi, Adel Ali Saeed Ali, Abid Ali, Mohammed Usman Ali, Syed Shujait Ali, Waad Alicandro, Gianfranco Alif, Sheikh Mohammad Al-Jumaily, Adel Allebeck, Peter Alrawashdeh, Ahmad Al-Rifai, Rami H Alsabri, Mohammed A. Alshahrani, Najim Z. Aluh, Deborah Oyine Al-Wardat, Mohammad Al-Zyoud, Walid A Amiri, Sohrab Anderlini, Deanna Andrei, Catalina Liliana Anil, Abhishek Anvari, Saeid Anyasodor, Anayochukwu Edward Appiah, Seth Christopher Yaw Aquilano, Michele Arabloo, Jalal Arafat, Mosab Areda, Demelash Aremu, Abdulfatai Armani, Keivan Armocida, Benedetta Ärnlöv, Johan Asaduzzaman, Muhammad Astell-Burt, Thomas Aujayeb, Avinash Ausloos, Marcel Azadnajafabad, Sina Aziz, Shahkaar Azzam, Ahmed Y. Babu, Giridhara Rathnaiah Badache, Andreea Corina Badiye, Ashish D. Bahramian, Saeed Baig, Atif Amin Baker, Jennifer L. Bansal, Hansi Bärnighausen, Till Winfried Barone, Mark Thomaz Ugliara Barrow, Amadou Barteit, Sandra Bashir, Shahid Bashiru, Hameed Akande Basso, João Diogo Bastan, Mohammad-Mahdi Basu, Sanjay Batra, Kavita Bauckneht, Matteo Baune, Bernhard T. Beghi, Massimiliano Beiranvand, Maryam Béjot, Yannick Bell, Michelle L. Bello, Olorunjuwon Omolaja Belo, Luis Beloukas, Apostolos Beneke, Alice A. Bettencourt, Paulo J G Bhagavathula, Akshaya Srikanth Bhala, Neeraj Bhaskar, Sonu Bisulli, Francesca Bjørge, Tone Bodunrin, Aadam Olalekan Carvajal, Alejandro Botero Bouaoud, Souad Brayne, Carol Brenner, Herm Department of Primary Care and Public Health University of East Anglia Norwich United Kingdom Office for Health Improvement and Disparity Department of Health and Social Care London United Kingdom Office for Health Improvement and Disparities Department of Health and Social Care London United Kingdom Department of Legal and Economic Studies La Sapienza University Rome Italy Rome Italy Hull York Medical School University of Hull Hull United Kingdom Department of Mathematics and Sciences Ajman University Ajman United Arab Emirates Department of Medicine Memorial University St. John's NL Canada Postgraduate Department University of Sierrasur Miahuatlan de Porfirio Diaz Mexico Yhteiskuntadatatieteen Keskus University of Helsinki Helsinki Finland Department of Internal Medicine Federal Medical Centre Abuja Nigeria Research Center for Immunodeficiencies Tehran University of Medical Sciences Tehran Iran Department of Medical Biochemistry and Biophysics Stockholm Sweden Department of Clinical Sciences University of Sharjah Sharjah United Arab Emirates Department of Biopharmaceutics and Clinical Pharmacy University of Jordan Amman Jordan Medical Research Center Hamad Medical Corporation Doha Qatar Department of Biochemistry and Molecular Medicine Alfaisal University Riyadh Saudi Arabia College of Graduate Health Sciences University of Tennessee Memphis TN United States School of Medicine University of Sydney Sydney NSW Australia Centre for Social Research in Health University of New South Wales Sydney NSW Australia Internal Medicine and Alcohol Related Disease Unit Fondazione Policlinico Universitario A. Gemelli IRCCS Rome Italy Department of Medical and Surgical Sciences Università Cattolica di Roma (Catholic University of Rome) Rome Italy Department of Obstetrics and Gynecology University of Texas Medical Branch Galveston TX United States Department of Biochemistry Osun State University Osogbo Nigeria Department of Pharmacology and Therapeutics U

Background: Decades of steady improvements in life expectancy in Europe slowed down from around 2011, well before the COVID-19 pandemic, for reasons which remain disputed. We aimed to assess how changes in risk factors and cause-specific death rates in different European countries related to changes in life expectancy in those countries before and during the COVID-19 pandemic. Methods: We used data and methods from the Global Burden of Diseases, Injuries, and Risk Factors Study 2021 to compare changes in life expectancy at birth, causes of death, and population exposure to risk factors in 16 European Economic Area countries (Austria, Belgium, Denmark, Finland, France, Germany, Greece, Iceland, Ireland, Italy, Luxembourg, the Netherlands, Norway, Portugal, Spain, and Sweden) and the four UK nations (England, Northern Ireland, Scotland, and Wales) for three time periods: 1990–2011, 2011–19, and 2019–21. Changes in life expectancy and causes of death were estimated with an established life expectancy cause-specific decomposition method, and compared with summary exposure values of risk factors for the major causes of death influencing life expectancy. Findings: All countries showed mean annual improvements in life expectancy in both 1990–2011 (overall mean 0·23 years [95% uncertainty interval [UI] 0·23 to 0·24]) and 2011–19 (overall mean 0·15 years [0·13 to 0·16]). The rate of improvement was lower in 2011–19 than in 1990–2011 in all countries except for Norway, where the mean annual increase in life expectancy rose from 0·21 years (95% UI 0·20 to 0·22) in 1990–2011 to 0·23 years (0·21 to 0·26) in 2011–19 (difference of 0·03 years). In other countries, the difference in mean annual improvement between these periods ranged from –0·01 years in Iceland (0·19 years [95% UI 0·16 to 0·21] vs 0·18 years [0·09 to 0·26]), to –0·18 years in England (0·25 years [0·24 to 0·25] vs 0·07 years [0·06 to 0·08]). In 2019–21, there was an overall decrease in mean annual life expectancy a

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Abstracts from the 20th International Symposium on Signal Transduction at the Blood-Brain Barriers Abstracts

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FLUIDS AND BARRIERS OF THE CNS 2017年第SUPPL 2期14卷 27-27页

作者： [Anonymous] The Jerzy Kukuczka Academy of Physical Education Katowice Poland The Institute of Animal Physiology and Food Research Polish Academy of Sciences Olsztyn Poland University of Miami Miami FL USA Institute of Pharmaceutical Science King’s College London London United Kingdom Department of Ophthalmology and Molecular and Integrative Physiology The University of Michigan Ann Arbor MI USA Department of Internal Medicine and Cardiology The University of Michigan Ann Arbor MI USA School of Medicine Department of Cellular and Molecular Medicine Koc University Istanbul Turkey Department of Cellular and Molecular Medicine Medical Faculty Koc University Istanbul Turkey Department of Neuroscience School of Medicine Koc University Istanbul Turkey Department of Neuroscience Medical Faculty Koc University Istanbul Turkey Department of Laboratory Animals Science Aziz Sancar Experimental Medicine Research Institute Istanbul University Istanbul Turkey Department of Neuroscience Aziz Sancar Experimental Medicine Research Institute Istanbul University Istanbul Turkey School of Medicine Koc University Istanbul Turkey Department of Forensic Science Istanbul Faculty of Medicine Istanbul University Istanbul Turkey Department of Histology and Embryology School of Medicine Koc University Istanbul Turkey Department of Histology and Embryology Istanbul Faculty of Medicine Istanbul University Istanbul Turkey Department of Physiology School of Medicine Koc University Istanbul Turkey Theodor Kocher Institute University of Bern Bern Switzerland Institute of Veterinary Physiology Vetsuisse Faculty University of Zurich Zurich Switzerland Zurich Center for Integrative Human Physiology University of Zurich Zurich Switzerland Zurich Center of Integrative Human Physiology University of Zurich Zurich Switzerland Institute for Veterinary Physiology and Zurich Center for Integrative Human Physiology University of Zurich Zurich Switzerland Institute of Veterinary Physiology Univer

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Author Correction: The FLUXNET2015 dataset and the ONEFlux processing pipeline for eddy covariance data

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Scientific data 2021年第1期8卷 72页

作者： Gilberto Pastorello Carlo Trotta Eleonora Canfora Housen Chu Danielle Christianson You-Wei Cheah Cristina Poindexter Jiquan Chen Abdelrahman Elbashandy Marty Humphrey Peter Isaac Diego Polidori Markus Reichstein Alessio Ribeca Catharine van Ingen Nicolas Vuichard Leiming Zhang Brian Amiro Christof Ammann M Altaf Arain Jonas Ardö Timothy Arkebauer Stefan K Arndt Nicola Arriga Marc Aubinet Mika Aurela Dennis Baldocchi Alan Barr Eric Beamesderfer Luca Belelli Marchesini Onil Bergeron Jason Beringer Christian Bernhofer Daniel Berveiller Dave Billesbach Thomas Andrew Black Peter D Blanken Gil Bohrer Julia Boike Paul V Bolstad Damien Bonal Jean-Marc Bonnefond David R Bowling Rosvel Bracho Jason Brodeur Christian Brümmer Nina Buchmann Benoit Burban Sean P Burns Pauline Buysse Peter Cale Mauro Cavagna Pierre Cellier Shiping Chen Isaac Chini Torben R Christensen James Cleverly Alessio Collalti Claudia Consalvo Bruce D Cook David Cook Carole Coursolle Edoardo Cremonese Peter S Curtis Ettore D'Andrea Humberto da Rocha Xiaoqin Dai Kenneth J Davis Bruno De Cinti Agnes de Grandcourt Anne De Ligne Raimundo C De Oliveira Nicolas Delpierre Ankur R Desai Carlos Marcelo Di Bella Paul di Tommasi Han Dolman Francisco Domingo Gang Dong Sabina Dore Pierpaolo Duce Eric Dufrêne Allison Dunn Jiří Dušek Derek Eamus Uwe Eichelmann Hatim Abdalla M ElKhidir Werner Eugster Cacilia M Ewenz Brent Ewers Daniela Famulari Silvano Fares Iris Feigenwinter Andrew Feitz Rasmus Fensholt Gianluca Filippa Marc Fischer John Frank Marta Galvagno Mana Gharun Damiano Gianelle Bert Gielen Beniamino Gioli Anatoly Gitelson Ignacio Goded Mathias Goeckede Allen H Goldstein Christopher M Gough Michael L Goulden Alexander Graf Anne Griebel Carsten Gruening Thomas Grünwald Albin Hammerle Shijie Han Xingguo Han Birger Ulf Hansen Chad Hanson Juha Hatakka Yongtao He Markus Hehn Bernard Heinesch Nina Hinko-Najera Lukas Hörtnagl Lindsay Hutley Andreas Ibrom Hiroki Ikawa Marcin Jackowicz-Korczynski Dalibor Janouš Wilma Jans Rachhpal Jassal Shicheng Jiang Tomomichi Kato Myr Computational Research Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA. gzpastorello@lbl.gov. DIBAF University of Tuscia Viterbo 01100 Italy. Euro-Mediterranean Centre on Climate Change Foundation (CMCC) Lecce 73100 Italy. Climate & Ecosystem Sciences Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA. Computational Research Division Lawrence Berkeley National Laboratory Berkeley CA 94720 USA. Department of Civil Engineering California State University Sacramento CA 95819 USA. Department of Geography Environment and Spatial Sciences Michigan State University East Lansing MI 48823 USA. Department of Computer Science University of Virginia Charlottesville VA 22904 USA. TERN Ecosystem Processes Menzies Creek VIC3159 Australia. Max Planck Institute for Biogeochemistry Jena 07701 Germany. Laboratoire des Sciences du Climat et de l'Environnement (LSCE) CEA CNRS UVSQ UPSACLAY Gif sur Yvette 91190 France. Key Laboratory of Ecosystem Network Observation and Modeling Institute of Geographic Sciences and Natural Resources Research Chinese Academy of Sciences Beijing 100101 China. Department of Soil Science University of Manitoba Winnipeg MB R3T2N2 Canada. Department of Agroecology and Environment Agroscope Research Institute Zürich 8046 Switzerland. School of Geography and Earth Sciences McMaster University L8S4K1 Hamilton ON Canada. Department of Physical Geography and Ecosystem Science Lund University Lund 22362 Sweden. Department of Agronomy and Horticulture University of Nebraska-Lincoln Lincoln NE 68583 USA. School of Ecosystem and Forest Sciences The University of Melbourne Richmond VIC3121 Australia. Department of Biology Research Group PLECO University of Antwerp Antwerp 2610 Belgium. Joint Research Centre European Commission Ispra 21027 Italy. TERRA Teaching and Research Center University of Liege Gembloux B-5030 Belgium. Finnish Meteorological Institute Helsinki 00560 Finland. ES

A Correction to this paper has been published: https://***/10.1038/s41597-021-00851-9.

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