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Communications biology 2022年第1期5卷 315页

作者： Yuanhui Song Hitoshi Uchida Azmeer Sharipol Lindsay Piraino Jared A Mereness Matthew H Ingalls Jonathan Rebhahn Shawn D Newlands Lisa A DeLouise Catherine E Ovitt Danielle S W Benoit Department of Biomedical Engineering University of Rochester Rochester NY USA. Center for Oral Biology University of Rochester Medical Center Rochester NY USA. Department of Biomedical Genetics University of Rochester Medical Center Rochester NY USA. Department of Dermatology University of Rochester Medical Center Rochester NY USA. Department of Environmental Medicine University of Rochester Medical Center Rochester NY USA. David H. Smith Center for Vaccine Biology and Immunology University of Rochester Medical Center Rochester NY USA. Department of Otolaryngology University of Rochester Medical Center Rochester NY USA. Wilmot Cancer Institute University of Rochester Medical Center Rochester NY USA. Department of Neuroscience University of Rochester Medical Center Rochester NY USA. Materials Science Program University of Rochester Rochester NY USA. Department of Biomedical Engineering University of Rochester Rochester NY USA. benoit@bme.rochester.edu. Center for Oral Biology University of Rochester Medical Center Rochester NY USA. benoit@bme.rochester.edu. Department of Biomedical Genetics University of Rochester Medical Center Rochester NY USA. benoit@bme.rochester.edu. Department of Environmental Medicine University of Rochester Medical Center Rochester NY USA. benoit@bme.rochester.edu. Wilmot Cancer Institute University of Rochester Medical Center Rochester NY USA. benoit@bme.rochester.edu. Materials Science Program University of Rochester Rochester NY USA. benoit@bme.rochester.edu. Department of Chemical Engineering University of Rochester Rochester NY USA. benoit@bme.rochester.edu. Center for Musculoskeletal Research University of Rochester Medical Center Rochester NY USA. benoit@bme.rochester.edu.

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BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series

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Global Ecology and Biogeography 2025年第5期34卷

作者： Maria Dornelas Laura H. Antão Amanda E. Bates Viviana Brambilla Jonathan M. Chase Cher F. Y. Chow Ada Fontrodona-Eslava Anne E. Magurran Inês S. Martins Faye Moyes Alban Sagouis Samuel Adu-Acheampong Daniel Acquah-Lamptey Dušan Adam Penelope A. Ajani Aitor Albaina Pablo Almaraz Jeongseop An Roger Sigismund Anderson Madelaine Jean Robertson Anderson Alexsander Z. Antunes Ivan Arismendi Linda Armbrecht Pedro Aros-Mardones Sreejith Kalpuzha Ashtamoorthy Narayanan Ayyappan Gal Badihi Joseph J. Bailey Andrew H. Baird Mark Edward Baird Sreekumar Vadakkethil Balakrishnan José António L. Barão-Nóbrega Adi Barash Miguel Barbosa Jos Barlow Claus Bässler Matthieu Beaumont Natalie Beenaerts Tiago Octavio Begot Wallace Beiroz Ricardo Beldade David M. Bell Alecia Bellgrove Jonathan Belmaker Lisandro Benedetti-Cecchi Cassandra E. Benkwitt Pamela Medina-van Berkum Brandon T. Bestelmeyer Matthew G. Betts Maxwell Kelvin Billah Anne D. Bjorkman Magdalena Błażewicz Christopher P. Bloch Shane A. Blowes Antonio Bode Juliano A. Bogoni Thomas Bolger Timothy C. Bonebrake Erik Bonsdorff Roberta Bottarin Luke N. Brokensha Rob W. Brooker Andrew J. Brooks Helge Bruelheide Thiago Almeida Bueno Claire Laguionie Mariana Lopes Campagnoli James Cant Erica Pellegrini Caramaschi Alexandre Caron Tadhg Carroll Tancredi Caruso Juan Carvajal-Quintero Giuseppe Castaldelli Edward Castañeda-Moya Pedro V. Castilho Sonia Zanini Cechin Shahar Chaikin Uchangi Manjunatha Chandrashekara Tory J. Chase Chaolun Allen Chen Jorge José Cherem Sei-Woong Choi Erica M. Christensen Alexander V. Christianini Jackson Wing Four Chu Peter Coad Carl Van Colen Lise Comte Elisabeth J. Cooper J. Hans C. Cornelissen Eddy Cosson Unai Cotano Luc Crevecoeur Shannan Kyle Crow Graeme S. Cumming Vanessa S. Daga Gabriella Damasceno Gergana N. Daskalova Claire H. Davies Robert A. Davis Frank P. Day Sussy De-La-Zerda Amy Elizabeth Deacon Indradatta de Castro-Arrazola Steven Degraer Kharran Deonarinesingh Juan C. Diaz-Ricaurte Christopher R. Dickman Tara Dirilgen Ciaran John Dolan J. Emmet Centre for Biological Diversity School of Biology University of St Andrews Fife UK MARE—Centro de Ciências do Mar e do Ambiente Faculdade de Ciências Universidade de Lisboa Lisboa Portugal Research Centre for Ecological Change Organismal and Evolutionary Biology Research Programme Faculty of Biological and Environmental Sciences University of Helsinki Helsinki Finland Department of Biology University of Victoria Victoria British Columbia Canada German Centre for Integrative Biodiversity Research (iDiv) Halle-Jena-Leipzig Leipzig Germany Department of Computer Science Martin Luther University Halle-Wittenberg Halle (Saale) Germany Leverhulme Centre for Anthropocene Biodiversity Department of Biology University of York York UK Department of Animal Biology and Conservation Science University of Ghana Accra Ghana Philipps Universität Marburg Marburg Germany Department of Forest Ecology Silva Tarouca Research Institute Brno Czech Republic School of Life Sciences University of Technology Sydney Sydney New South Wales Australia Zoology and Animal Cell Biology Department University of the Basque Country (UPV/EHU) Leioa Spain Grupo de Oceanografía de Ecosistemas Instituto de Ciencias Marinas de Andalucía CSIC Campus Universitario de Puerto Real Puerto Real Spain National Institute of Ecology Seocheon Republic of Korea African Regional Postgraduate Programme in Insect Science University of Ghana Accra Ghana Département de Biologie Université de Sherbrooke Sherbrooke Quebec Canada Núcleo de Conservação da Biodiversidade Instituto de Pesquisas Ambientais Secretaria de Meio Ambiente Infraestrutura e Logística do Estado de São Paulo São Paulo Brazil Department of Fisheries Wildlife and Conservation Sciences Oregon State University Corvallis Oregon USA Institute for Marine and Antarctic Studies Ecology & Biodiversity Centre University of Tasmania Hobart Tasmania Australia Graduate Program in Oceanography Department of Oceanography Faculty of Natural Scienc

Motivation Here, we make available a second version of the BioTIME database, which compiles records of abundance estimates for species in sample events of ecological assemblages through time. The updated version expands version 1.0 of the database by doubling the number of studies and includes substantial additional curation to the taxonomic accuracy of the records, as well as the metadata. Moreover, we now provide an R package (BioTIMEr) to facilitate use of the database. Main Types of Variables Included The database is composed of one main data table containing the abundance records and 11 metadata tables. The data are organised in a hierarchy of scales where 11,989,233 records are nested in 1,603,067 sample events, from 553,253 sampling locations, which are nested in 708 studies. A study is defined as a sampling methodology applied to an assemblage for a minimum of 2 years. Spatial Location and Grain Sampling locations in BioTIME are distributed across the planet, including marine, terrestrial and freshwater realms. Spatial grain size and extent vary across studies depending on sampling methodology. We recommend gridding of sampling locations into areas of consistent size. Time Period and Grain The earliest time series in BioTIME start in 1874, and the most recent records are from 2023. Temporal grain and duration vary across studies. We recommend doing sample-level rarefaction to ensure consistent sampling effort through time before calculating any diversity metric. Major Taxa and Level of Measurement The database includes any eukaryotic taxa, with a combined total of 56,400 taxa. Software Format csv and. SQL.

关键词： assemblage biodiversity community database ecoinformatics species taxa time

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The influence of micro plastic to Chlorella growth in difference aquatic systems

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AIP Conference Proceedings 2020年第1期2197卷

作者： Mohammad Muslihuddin Hadiyanto Fuad Muhammad Adian Khoironi Norma Afiati 1Center of Biomass and Renewable Energy Chemical Engineering Department Diponegoro University Indonesia 2Master Program of Environmental Sciences School of Postgraduate Studies Diponegoro University Indonesia 3Biology Department Faculty of Science and Mathematics Diponegoro University Indonesia 4Faculty of Fisheries and Marines Sciences Diponegoro University Indonesia

Plastic waste is harmful to human health and became climacteric problem for our environment. In year 2010, 275 million metric tons (MT) of plastic waste was emerge in 192 coastal countries. Micro plastic with size range around 1-5mm also affecting microorganism such as microalgae, Chlorella Pyrenoidosa which one of many species of microalgae is no exception. This microalga commonly used for foodstuff as the source of protein and lipid, also can be used as materials to make biodiesel since it also rich with lipid and can be processed with either esterification, trans-esterification or both. 500mg micro plastic of polyethylene terephthalate (PET) is added in 25ml Chlorella Pyrenoidosa on peak of its growth. Additional amount of diluted nutrients in 250ml freshwater and brackish also being added as controls with different salinity. Since control experiment also being made without the presence of PET micro plastic, the growth rate shown in Chlorella Pyrenoidosa which being add with PET micro plastic is more than the growth rate Chlorella Pyrenoidosa without micro plastic. This difference could be due utilization of micro plastic as carbon source by Chlorella Pyrenoidosa.

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Author Correction: Wiskott-Aldrich syndrome protein forms nuclear condensates and regulates alternative splicing

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Nature communications 2022年第1期13卷 5291页

作者： Baolei Yuan Xuan Zhou Keiichiro Suzuki Gerardo Ramos-Mandujano Mengge Wang Muhammad Tehseen Lorena V Cortés-Medina James J Moresco Sarah Dunn Reyna Hernandez-Benitez Tomoaki Hishida Na Young Kim Manal M Andijani Chongwei Bi Manching Ku Yuta Takahashi Jinna Xu Jinsong Qiu Ling Huang Christopher Benner Emi Aizawa Jing Qu Guang-Hui Liu Zhongwei Li Fei Yi Yanal Ghosheh Changwei Shao Maxim Shokhirev Patrizia Comoli Francesco Frassoni John R Yates Xiang-Dong Fu Concepcion Rodriguez Esteban Samir Hamdan Juan Carlos Izpisua Belmonte Mo Li Bioscience Program Biological and Environmental Science and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Kingdom of Saudi Arabia. Gene Expression Laboratory Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Institute for Advanced Co-Creation Studies Graduate School of Engineering Science Osaka University Osaka Japan. Department of Cell Biology Scripps Research Institute La Jolla CA 92037 USA. The Waitt Advanced Biophotonics Core Facility Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Altos Labs Inc. 5510 Morehouse Drive Suite 300 San Diego CA 92121 USA. Laboratory of Biological Chemistry School of Pharmaceutical Sciences Wakayama Medical University 25-1 Shitibancho Wakayama Wakayama 640-8156 Japan. Next-generation sequencing core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. Life Science Center Tsukuba Advanced Research Alliance University of Tsukuba 1-1-1 Tennoudai Tsukuba Ibaraki 305-8577 Japan. Department of Cellular & Molecular Medicine University of California at San Diego La Jolla CA 92093 USA. Integrative Genomics and Bioinformatics Core Salk Institute for Biological Studies 10010 North Torrey Pines Road La Jolla CA 92037 USA. State Key Laboratory of Membrane Biology Institute of Zoology Chinese Academy of Sciences Beijing 100101 China. University of Southern California 1333 San Pablo Street MMR 618 Los Angeles CA 90033 USA. Ambys Medicines 131 Oyster Point Blvd. Suite 200 South San Francisco CA 94080 USA. Pediatric Hematology/Oncology and Cell Factory Fondazione IRCCS Policlinico San Matteo Pavia Italy. Department of Research Laboratories and Director of Center for Stem Cell and Cell Therapy Instituto G. Gaslini Children Hospital Scientific Institute 16147 Genova Italy. Bioscience Program Biological and Environmental Science and Engineering

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ELIMÄKI Locus Is Required for Vertical Proprioceptive Response in Birch Trees

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Current biology 2020年第4期30卷 589-599.e5页

作者： Alonso-Serra, Juan Shi, Xueping Peaucelle, Alexis Rastas, Pasi Bourdon, Matthieu Immanen, Juha Takahashi, Junko Koivula, Hanna Eswaran, Gugan Muranen, Sampo Help, Hanna Smolander, Olli-Pekka Su, Chang Safronov, Omid Gerber, Lorenz Salojärvi, Jarkko Hagqvist, Risto Mähönen, Ari Pekka Helariutta, Ykä Nieminen, Kaisa Organismal and Evolutionary Biology Research Program Faculty of Biological and Environmental Sciences Viikki Plant Science Centre University of Helsinki Helsinki 00014 Finland Institute of Biotechnology HiLIFE University of Helsinki Helsinki 00014 Finland Key Laboratory of Horticultural Plant Biology of Ministry of Education College of Horticulture and Forestry Sciences Huazhong Agricultural University Wuhan 430070 China Sainsbury Laboratory University of Cambridge Cambridge CB2 1LR United Kingdom Institut Jean-Pierre Bourgin INRA AgroParisTech CNRS Université Paris-Saclay Versailles 78000 France Production Systems Natural Resources Institute Finland (Luke) Helsinki 00790 Finland Umeå Plant Science Center Department of Forest Genetics and Plant Physiology Swedish University of Agricultural Sciences Umeå 901 83 Sweden Department of Food and Nutrition Faculty of Agriculture and Forestry University of Helsinki Helsinki 00014 Finland Department of Physics Division of Materials Sciences X-ray Laboratory University of Helsinki Helsinki 00014 Finland Department of Chemistry and Biotechnology School of Science Tallinn University of Technology Tallinn Estonia Genome Institute of Singapore Singapore 138672 Singapore Singapore Centre for Environmental Life Sciences Engineering Nanyang Technological University Singapore 63755 Singapore

Tree architecture has evolved to support a top-heavy above-ground biomass, but this integral feature poses a weight-induced challenge to trunk stability. Maintaining an upright stem is expected to require vertical proprioception through feedback between sensing stem weight and responding with radial growth. Despite its apparent importance, the principle by which plant stems respond to vertical loading forces remains largely unknown. Here, by manipulating the stem weight of downy birch (Betula pubescens) trees, we show that cambial development is modulated systemically along the stem. We carried out a genetic study on the underlying regulation by combining an accelerated birch flowering program with a recessive mutation at the ELIMÄKI locus (EKI), which causes a mechanically defective response to weight stimulus resulting in stem collapse after just 3 months. We observed delayed wood morphogenesis in eki compared with WT, along with a more mechanically elastic cambial zone and radial compression of xylem cell size, indicating that rapid tissue differentiation is critical for cambial growth under mechanical stress. Furthermore, the touch-induced mechanosensory pathway was transcriptionally misregulated in eki, indicating that the ELIMÄKI locus is required to integrate the weight-growth feedback regulation. By studying this birch mutant, we were able to dissect vertical proprioception from the gravitropic response associated with reaction wood formation. Our study provides evidence for both local and systemic responses to mechanical stimuli during secondary plant development. Alonso-Serra et al. use birch trees to explore vertical proprioception, the growth response of stems to changes in aerial body weight. They identify a genetic locus, which is required for this developmental response, and study the consequences of cambial growth under mechanical stress. © 2019 Elsevier Ltd

关键词： Betula forward genetics mechanosensing proprioception radial growth trees wood formation

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Combination of curcumin or chitosan with photodynamic therapy as an effective alternative therapy for overcoming wound infection associated with multidrug-resistant Acinetobacter baumannii

The Microbe

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The Microbe 2025年 7卷

作者： Manta Yonpiam Dhammika Leshan Wannigama Aye Mya Sithu Shein Tingting Liao Cameron Hurst Peter N. Monk Mohan Amarasiri Phatthranit Phattharapornjaroen Puey Ounjai Thammakorn Saethang Vishnu Nayak Badavath Sirirat Luk-in Sumanee Nilgate Ubolrat Rirerm Sukrit Srisakul Natharin Ngamwongsatit Asada Leelahavanichkul Naveen Kumar Devanga Ragupathi Talerngsak Kanjanabuch Phurin Narkban Tanittha Chatsuwan Department of Microbiology Faculty of Medicine Chulalongkorn University King Chulalongkorn Memorial Hospital Thai Red Cross Society Bangkok Thailand Center of Excellence in Antimicrobial Resistance and Stewardship Research Faculty of Medicine Chulalongkorn University Bangkok Thailand Dual degree Medical Science program Faculty of Medicine Chulalongkorn University Bangkok 10330 Thailand Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan School of Medicine Faculty of Health and Medical Sciences The University of Western Australia Nedlands Western Australia Australia Biofilms and Antimicrobial Resistance Consortium of ODA receiving countries The University of Sheffield Sheffield United Kingdom Pathogen Hunter's Research Team Department of Infectious Diseases and Infection Control Yamagata Prefectural Central Hospital Yamagata Japan Department of Infectious Diseases Faculty of Medicine Yamagata University Yamagata Japan Department of Clinical Epidemiology Faculty of Medicine Thammasat University Rangsit 10120 Thailand Department of Infection Immunity & Cardiovascular Disease University of Sheffield Medical School United Kingdom Center of Excellence in Applied Epidemiology Thammasat University Rangsit 10120 Thailand Department of Civil and Environmental Engineering Graduate School of Engineering Tohoku University Miyagi Japan Faculty of Health Science Technology Chulabhorn Royal Academy Bangkok 10210 Thailand HRH Princess Chulabhorn Disaster and Emergency Medicine Center Chulabhorn Royal Academy Bangkok 10210 Thailand Department of Biology Faculty of Science Mahidol University Bangkok Thailand Department of Computer Science Faculty of Science Kasetsart University Bangkok Thailand School of Pharmacy & Technology Management SVKM's Narsee Monjee Institute of Management Studies (NMIMS) Hyderabad 509301 India Department of Clinical Microbiology and Applied Technology Faculty of Medical Technology Mahi

The increasing prevalence of multidrug-resistant Acinetobacter baumannii as an opportunistic pathogen in wound infections raises significant concerns due to its antibiotic resistance and biofilm-mediated antibiotic tolerance. This underscores the urgent need to explore an alternative approach to effectively managing wound infections caused by MDR A. baumannii . In this study, combining subinhibitory concentrations of curcumin (25 µg/ml) or chitosan (156 µg/ml) with photodynamic therapy-PDT (10 J/cm 2 ) resulted in a significant reduction of planktonic viabilities and biofilm biovolume of MDR A. baumannii clinical isolates in vitro . In murine A. baumannii- associated wound infection, a combination of curcumin (25 µg/ml) or chitosan (156 µg/ml) with PDT (10 J/cm 2 ) resulted in complete bacterial eradication with wound healing at Day 15 of post-treatments with these combination therapies. Our study demonstrated that combining curcumin or chitosan with PDT at their subinhibitory concentrations represents a promising alternative strategy as localized therapy for effectively managing A. baumannii -associated wound infection.

关键词： Acinetobacter baumannii Multidrug-resistant (MDR) Photodynamic therapy (PDT) Curcumin Chitosan Biofilm eradication Wound infection Alternative therapy

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Metallo-Helicoid with Double Rims: Polymerization Followed by Folding by Intramolecular Coordination

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Angewandte Chemie 2020年第3期133卷

作者： Dr. Guang-Qiang Yin Sneha Kandapal Chung-Hao Liu Dr. Heng Wang Dr. Jianxiang Huang Shu-Ting Jiang Tan Ji Yu Yan Sandra Khalife Dr. Ruhong Zhou Dr. Libin Ye Dr. Bingqian Xu Dr. Hai-Bo Yang Dr. Mu-Ping Nieh Dr. Xiaopeng Li College of Chemistry and Environmental Engineering Shenzhen University Shenzhen Guangdong 518055 China Single Molecule Study Laboratory College of Engineering and Nanoscale Science and Engineering Center University of Georgia Athens GA 30602 USA Department of Chemical and Biomolecular Engineering University of Connecticut Storrs CT 06269 USA Institute of Quantitative Biology Zhejiang University Hangzhou Zhejiang 310027 China Shanghai Key Laboratory of Green Chemistry and Chemical Processes Department of Chemistry East China Normal University Shanghai 200062 China Department of Chemistry University of South Florida Tampa FL 33620 USA Department of Cell Biology Microbiology and Molecular Biology University of South Florida Tampa FL 33620 USA Polymer Program Institute of Material Science University of Connecticut Storrs CT 06269 USA

In this study, we established a feasible strategy to construct a new type of metallo-polymer with helicoidal structure through the combination of covalent polymerization and intramolecular coordination-driven self-assembly. In the design, a tetratopic monomer ( M ) was prepared with two terminal alkynes in the outer rim for polymerization, and two terpyridines (TPYs) in the inner rim for subsequent folding by selective intramolecular coordination. Then, the linear covalent polymer ( P ) was synthesized by polymerization of M via Glaser-Hay homocoupling reaction. Finally, intramolecular coordination interactions between TPYs and Zn(II) folded the backbone of P into a right- or left-handed metallo-helicoid ( H ) with double rims. Owing to multiple positive charges on the inner rim of helicoid, double-stranded DNA molecules (dsDNA) could interact with H through electrostatic interactions. Remarkably, dsDNA allowed exclusive formation of H with right handedness by means of chiral induction.

关键词： coordination-driven self-assembly helicoid metallo-polymers terpyridine tetraphenylethylene

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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Development of solid waste of tofu industry immobilized on silica surface as adsorbent for the adsorption of Cd (II) using method of continuous flow column

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IOP Conference Series: Earth and environmental science 2019年第1期259卷

作者： H Darmokoesoemo E P Kuncoro G Supriyanto W Manuhara A L Wijaya Department of Chemistry Faculty of Science and Technology Universitas Airlangga Surabaya Indonesia Study Program of Environmental Engineering Faculty of Science and Technology Universitas Airlangga Surabaya Indonesia Department of Biology Faculty of Science and Technology Universitas Airlangga Surabaya Indonesia

The aim of this research is to determine the removal efficiency of Cd (II) based on the pH variation and the optimum pH on the batch method, the adsorbent height variation and flow rate in continuous flow column which using tofu solid waste industry which was immobilized silica as adsorbent, also to characterize and to identify functional groups of the absorbent using the FTIR analysis. The pH variation used was 2,3,4,5, and 6. Adsorbent height variation used was 2 cm and 4 cm. Then, variation of flow rate used was 5 ml/min and 10 ml/min. Determination of pH optimum was done using One-Way Anova analysis and continued with Duncan test and descriptive analysis based on the table and graphic. The analysis data of the removal efficiency of Cd (II) in continuous flow column was explained by the descriptive analysis. The pHPCZ was 8.4. The pH optimum was 6 with the removal efficiency 48.14%. The removal efficiency of Cd (II) in continuous flow column for the adsorbent height variation 2 cm and 4 cm which were 38,22% and 43,42% respectively. The removal efficiency of Cd (II) in continuous flow column for the flow rate 5ml/min and 10ml/min each by 38.22% and 39.01%. The result of FTIR analysis of the adsorbent conducted before the adsorption shown that there were functional groups of C=O (vibrate at 1651.07 cm-1), Si-O-Si (462.92 cm-1 and 1095.6 cm-1), O-H (3425.58 cm-1), and N-H (3749.62 cm-1). While, the result of the FTIR analysis after the adsorption shown that there were Si-O-Cd (956.72 cm-1) and Cd-N (412.78 cm-1).

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Author Correction: The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics

npj biodiversity

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npj biodiversity 2024年第1期3卷 31页

作者： Ann M Mc Cartney Giulio Formenti Alice Mouton Diego De Panis Luísa S Marins Henrique G Leitão Genevieve Diedericks Joseph Kirangwa Marco Morselli Judit Salces-Ortiz Nuria Escudero Alessio Iannucci Chiara Natali Hannes Svardal Rosa Fernández Tim De Pooter Geert Joris Mojca Strazisar Jonathan M D Wood Katie E Herron Ole Seehausen Phillip C Watts Felix Shaw Robert P Davey Alice Minotto José M Fernández Astrid Böhne Carla Alegria Tyler Alioto Paulo C Alves Isabel R Amorim Jean-Marc Aury Niclas Backstrom Petr Baldrian Laima Baltrunaite Endre Barta Bertrand BedHom Caroline Belser Johannes Bergsten Laurie Bertrand Helena Bilandija Mahesh Binzer-Panchal Iliana Bista Mark Blaxter Paulo A V Borges Guilherme Borges Dias Mirte Bosse Tom Brown Rémy Bruggmann Elena Buena-Atienza Josephine Burgin Elena Buzan Alessia Cariani Nicolas Casadei Matteo Chiara Sergio Chozas Fedor Čiampor Angelica Crottini Corinne Cruaud Fernando Cruz Love Dalen Alessio De Biase Javier Del Campo Teo Delic Alice B Dennis Martijn F L Derks Maria Angela Diroma Mihajla Djan Simone Duprat Klara Eleftheriadi Philine G D Feulner Jean-François Flot Giobbe Forni Bruno Fosso Pascal Fournier Christine Fournier-Chambrillon Toni Gabaldon Shilpa Garg Carmela Gissi Luca Giupponi Jessica Gomez-Garrido Josefa González Miguel L Grilo Björn Grüning Thomas Guerin Nadege Guiglielmoni Marta Gut Marcel P Haesler Christoph Hahn Balint Halpern Peter W Harrison Julia Heintz Maris Hindrikson Jacob Höglund Kerstin Howe Graham M Hughes Benjamin Istace Mark J Cock Franc Janžekovič Zophonias O Jonsson Sagane Joye-Dind Janne J Koskimäki Boris Krystufek Justyna Kubacka Heiner Kuhl Szilvia Kusza Karine Labadie Meri Lähteenaro Henrik Lantz Anton Lavrinienko Lucas Leclère Ricardo Jorge Lopes Ole Madsen Ghislaine Magdelenat Giulia Magoga Tereza Manousaki Tapio Mappes Joao Pedro Marques Gemma I Martinez Redondo Florian Maumus Shane A McCarthy Hendrik-Jan Megens Jose Melo-Ferreira Sofia L Mendes Matteo Montagna Joao Moreno Mai-Britt Mosbech Mónica Moura Zuzana Musilova Eugene Myers Will J N Genomics Institute University of California Santa Cruz CA USA. anmmccar@ucsc.edu. The Vertebrate Genome Laboratory The Rockefeller University New York NY USA. Department of Biology University of Florence Sesto Fiorentino Italy. InBios-Conservation Genetics Laboratory University of Liege Liege Belgium. Leibniz Institut für Zoo und Wildtierforschung Berlin Germany. Berlin Center for Genomics in Biodiversity Research Berlin Germany. Department of Biology University of Antwerp Antwerp Belgium. Institute of Zoology University of Cologne Cologne Germany. Department of Chemistry Life Sciences and Environmental Sustainability University of Parma Parma Italy. Institute of Evolutionary Biology (CSIC-Universitat Pompeu Fabra) Barcelona Spain. Naturalis Biodiversity Center Leiden The Netherlands. Neuromics Support Facility VIB Center for Molecular Neurology VIB Antwerp Belgium. Neuromics Support Facility Department of Biomedical Sciences University of Antwerp Antwerp Belgium. Tree of Life Wellcome Sanger Institute Hinxton Cambridge UK. School of Biology and Environmental Science University College Dublin Belfield Ireland. Aquatic Ecology & Evolution Institute of Ecology & Evolution University of Bern Bern Switzerland. Department of Fish Ecology & Evolution Eawag Kastanienbaum Switzerland. Department of Biological and Environmental Science University of Jyvaskyla Jyvaskyla Finland. The Earlham Institute Norwich Research Park Norwich UK. Digital Science London UK. Barcelona Supercomputing Center Spanish National Bioinformatics Institute ELIXIR Spain Getafe Spain. Leibniz Institute for the Analysis of Biodiversity Change Museum Koenig Bonn Bonn Germany. CE3C-Centre for Ecology Evolution and Environmental Changes & CHANGE-Global Change and Sustainability Institute Faculdade de Ciências Universidade de Lisboa Campo Grande Lisboa Portugal. Centro Nacional de Análisis Genómico (CNAG) Barcelona Spain. Universitat de Barcelona (UB) Barcelona Spain. CIBIO C

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