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Pathogenesis, symptomatology, and transmission of SARS-CoV-2 through analysis of viral genomics and structure

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arXiv 2021年

作者： Rando, Halie M. MacLean, Adam L. Lee, Alexandra J. Lordan, Ronan Ray, Sandipan Bansal, Vikas Skelly, Ashwin N. Sell, Elizabeth Dziak, John J. Shinholster, Lamonica D'Agostino McGowan, Lucy Guebila, Marouen Ben Wellhausen, Nils Knyazev, Sergey Boca, Simina M. Capone, Stephen Qi, Yanjun Park, Yoson Sun, Yuchen Mai, David Boerckel, Joel D. Brueffer, Christian Byrd, James Brian Kamil, Jeremy P. Wang, Jinhui Velazquez, Ryan Szeto, Gregory L. Barton, John P. Goel, Rishi Raj Mangul, Serghei Lubiana, Tiago Gitter, Anthony Greene, Casey S. Department of Systems Pharmacology and Translational Therapeutics University of Pennsylvania PhiladelphiaPA United States Department of Biochemistry and Molecular Genetics University of Colorado School of Medicine AuroraCO United States University of Colorado School of Medicine AuroraCO United States Department of Quantitative and Computational Biology University of Southern California Los AngelesCA United States Institute for Translational Medicine and Therapeutics Perelman School of Medicine University of Pennsylvania PhiladelphiaPA19104-5158 United States Department of Biotechnology Indian Institute of Technology Hyderabad Kandi Sangareddy Telangana 502285 India Biomedical Data Science and Machine Learning Group German Center for Neurodegenerative Diseases Tubingen72076 Germany Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Immunology University of Pennsylvania Perelman School of Medicine Philadelphia United States Edna Bennett Pierce Prevention Research Center The Pennsylvania State University University ParkPA United States LSH2126 Mercer University MaconGA United States Department of Mathematics and Statistics Wake Forest University Winston-SalemNC United States Department of Biostatistics Harvard School of Public Health BostonMA United States Georgia State University AtlantaGA United States Innovation Center for Biomedical Informatics Georgetown University Medical Center WashingtonDC United States St. George's University School of Medicine Saint George's Grenada Department of Computer Science University of Virginia CharlottesvilleVA United States Department of Bioengineering University of Pennsylvania PhiladelphiaPA United States Department of Orthopaedic Surgery Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Bioengineering University of Pennsylvania Philadelphia PhiladelphiaPA United States Department of Clinical Sciences L

The novel coronavirus SARS-CoV-2, which emerged in late 2019, has since spread around the world and infected hundreds of millions of people with coronavirus disease 2019 (COVID-19). While this viral species was unknown prior to January 2020, its similarity to other coronaviruses that infect humans has allowed for rapid insight into the mechanisms that it uses to infect human hosts, as well as the ways in which the human immune system can respond. Here, we contextualize SARS-CoV-2 among other coronaviruses and identify what is known and what can be inferred about its behavior once inside a human host. Because the genomic content of coronaviruses, which specifies the virus's structure, is highly conserved, early genomic analysis provided a significant head start in predicting viral pathogenesis and in understanding potential differences among variants. The pathogenesis of the virus offers insights into symptomatology, transmission, and individual susceptibility. Additionally, prior research into interactions between the human immune system and coronaviruses has identified how these viruses can evade the immune system's protective mechanisms. We also explore systems-level research into the regulatory and proteomic effects of SARS-CoV-2 infection and the immune response. Understanding the structure and behavior of the virus serves to contextualize the many facets of the COVID-19 pandemic and can influence efforts to control the virus and treat the disease. © 2021, CC BY.

关键词： Coronavirus

Patterns of somatic structural variation in human cancer genomes (vol 578, pg 112, 2020)

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NATURE 2023年第7948期614卷 E38-E38页

作者： Li, Yilong Roberts, Nicola D. Wala, Jeremiah A. Shapira, Ofer Schumacher, Steven E. Kumar, Kiran Khurana, Ekta Waszak, Sebastian Korbel, Jan O. Haber, James E. Imielinski, Marcin Weischenfeldt, Joachim Beroukhim, Rameen Campbell, Peter J. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK Totient Inc Cambridge MA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Haematology University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Korea Advanced Institute of Science and Technology Daejeon South Korea Department of Zoology Genetics and Physical Anthropology University of Santiago de Compostela Santiago de Compostela Spain Centre for Research in Molecular Medicine and Chronic Diseases (CIMUS) University of Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) University of Vigo Vigo Spain Centre for Research in Molecular Medicine and Chronic Diseases (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain Department of Zoology Genetics and Physical Anthropology (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) Universidade de Vigo Vigo Spain The Broad Institute of Harvard and MIT Cambridge MA USA Bioinformatics and Integrative Genomics Harvard University Cambridge MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Harvard Medical School Boston MA USA Massachusetts General Hospital Center for Cancer Research Charlestown MA USA Dana-Farber Cancer Institute Boston MA USA Department of Biostatistics and Computational Biology Dana-Farber Cancer Institute and Harvard Medical School Boston MA USA Weill Cornell Medical College New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine Ne

A universal language for finding mass spectrometry data patterns

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Nature Methods 2025年 1-8页

作者： Damiani, Tito Jarmusch, Alan K. Aron, Allegra T. Petras, Daniel Phelan, Vanessa V. Zhao, Haoqi Nina Bittremieux, Wout Acharya, Deepa D. Ahmed, Mohammed M. A. Bauermeister, Anelize Bertin, Matthew J. Boudreau, Paul D. Borges, Ricardo M. Bowen, Benjamin P. Brown, Christopher J. Chagas, Fernanda O. Clevenger, Kenneth D. Correia, Mario S. P. Crandall, William J. Crüsemann, Max Fahy, Eoin Fiehn, Oliver Garg, Neha Gerwick, William H. Gilbert, Jeffrey R. Globisch, Daniel Gomes, Paulo Wender P. Heuckeroth, Steffen James, C. Andrew Jarmusch, Scott A. Kakhkhorov, Sarvar A. Kang, Kyo Bin Kessler, Nikolas Kersten, Roland D. Kim, Hyunwoo Kirk, Riley D. Kohlbacher, Oliver Kontou, Eftychia E. Liu, Ken Lizama-Chamu, Itzel Luu, Gordon T. Luzzatto Knaan, Tal Mannochio-Russo, Helena Marty, Michael T. Matsuzawa, Yuki McAvoy, Andrew C. McCall, Laura-Isobel Mohamed, Osama G. Nahor, Omri Neuweger, Heiko Niedermeyer, Timo H. J. Nishida, Kozo Northen, Trent R. Overdahl, Kirsten E. Rainer, Johannes Reher, Raphael Rodriguez, Elys Sachsenberg, Timo T. Sanchez, Laura M. Schmid, Robin Stevens, Cole Subramaniam, Shankar Tian, Zhenyu Tripathi, Ashootosh Tsugawa, Hiroshi van der Hooft, Justin J. J. Vicini, Andrea Walter, Axel Weber, Tilmann Xiong, Quanbo Xu, Tao Pluskal, Tomáš Dorrestein, Pieter C. Wang, Mingxun Institute of Organic Chemistry and Biochemistry of the Czech Academy of Sciences Prague Czech Republic Metabolomics Core Facility Immunity Inflammation and Disease Laboratory Division of Intramural Research National Institute of Environmental Health Sciences National Institutes of Health Research Triangle Park NC United States Department of Chemistry and Biochemistry University of Denver Denver CO United States Functional Metabolomics Lab CMFI Cluster of Excellence University of Tuebingen Tuebingen Germany Department of Biochemistry University of California Riverside Riverside CA United States Department of Pharmaceutical Sciences Skaggs School of Pharmacy and Pharmaceutical Sciences University of Colorado Anschutz Medical Campus Aurora CO United States Collaborative Mass Spectrometry Innovation Center Skaggs School of Pharmacy and Pharmaceutical Sciences University of California San Diego La Jolla CA United States Biologicals and Natural Products Discovery Crop Protection R & D Corteva Agrisciences Indianapolis IN United States BioMolecular Sciences School of Pharmacy University of Mississippi Oxford MS United States Pharmacognosy Faculty of Pharmacy Al-Azhar University Nasr City Egypt Department of Fundamental Chemistry Institute of Chemistry University of São Paulo São Paulo Brazil Department of Chemistry Case Western Reserve University Cleveland OH United States Walter Mors Institute of Research on Natural Products Federal University of Rio de Janeiro Rio de Janeiro Brazil Environmental Genomics and Systems Biology Division Lawrence Berkeley National Lab Berkeley CA United States The Joint Genome Institute Lawrence Berkeley National Lab Berkeley CA United States Mass Spectrometry Center of Expertise Regulatory and Stewardship Corteva Agrisciences Indianapolis IN United States Biologicals and Natural Products Crop Protection R & D Corteva Agrisciences Indianapolis IN United States Department of Chemistry – BMC Science for Life Laborat

Despite being information rich, the vast majority of untargeted mass spectrometry data are underutilized;most analytes are not used for downstream interpretation or reanalysis after publication. The inability to dive into these rich raw mass spectrometry datasets is due to the limited flexibility and scalability of existing software tools. Here we introduce a new language, the Mass Spectrometry Query Language (MassQL), and an accompanying software ecosystem that addresses these issues by enabling the community to directly query mass spectrometry data with an expressive set of user-defined mass spectrometry patterns. Illustrated by real-world examples, MassQL provides a data-driven definition of chemical diversity by enabling the reanalysis of all public untargeted metabolomics data, empowering scientists across many disciplines to make new discoveries. MassQL has been widely implemented in multiple open-source and commercial mass spectrometry analysis tools, which enhances the ability, interoperability and reproducibility of mining of mass spectrometry data for the research community. © The Author(s), under exclusive licence to Springer Nature America, Inc. 2025.

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Robust frequent directions with application in online learning

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The Journal of Machine Learning Research

The Journal of Machine Learning Research 2019年第1期20卷

作者： Luo Luo Cheng Chen Zhihua Zhang Wu-Jun Li Tong Zhang Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai China National Engineering Lab for Big Data Analysis and Applications School of Mathematical Sciences Peking University Beijing China National Key Laboratory for Novel Software Technology Collaborative Innovation Center of Novel Software Technology and Industrialization Department of Computer Science and Technology Nanjing University Nanjing China Computer Science & Mathematics Hong Kong University of Science and Technology Hong Kong

The frequent directions (FD) technique is a deterministic approach for online sketching that has many applications in machine learning. The conventional FD is a heuristic procedure that often outputs rank deficient matrices. To overcome the rank deficiency problem, we propose a new sketching strategy called robust frequent directions (RFD) by introducing a regularization term. RFD can be derived from an optimization problem. It updates the sketch matrix and the regularization term adaptively and jointly. RFD reduces the approximation error of FD without increasing the computational cost. We also apply RFD to online learning and propose an effective hyperparameter-free online Newton algorithm. We derive a regret bound for our online Newton algorithm based on RFD, which guarantees the robustness of the algorithm. The experimental studies demonstrate that the proposed method outperforms state-of-the-art second order online learning algorithms.

关键词： frequent directions matrix approximation online Newton algorithm online convex optimization sketching

Smart radio environments

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arXiv 2021年

作者： Gradoni, Gabriele Renzo, Marco Di Díaz-Rubio, Ana Tretyakov, Sergei A. Caloz, Christophe Gradoni, Gabriele Peng, Zhen Alu, Andrea Lerosey, Geoffroy Fink, Mathias Galdi, Vincenzo Cui, Tie Jun Frazier, Benjamin W. Anlage, Steven M. Salucci, Marco Massa, Andrea Cheng, Qiang Wang, Jinghe Jin, Shi Dardari, Davide Decarli, Nicoló Yurduseven, Okan Matthaiou, Michail Kenney, Mitchell Gordon, George Georgiou, Orestis Nguyen, Cam Ly Martini, Enrica Maci, Stefano Wakatsuchi, Hiroki Phang, Sendy School of Mathematical Sciences Department of Electrical and Electronic Engineering University of Nottingham Nottingham United Kingdom Laboratoire des Signaux et Systémes CNRS CentraleSupélec Université Paris-Saclay Gif-sur-Yvette Paris France Department of of Electronics and Nanoengineering Aalto University Espoo Finland META Research Group KU Leuven Belgium School of Mathematical Sciences Department of Electrical and Electronic Engineering University of Nottingham University Park NG72RD United Kingdom Department of Electrical and Computer Engineering University of Illinois at Urbana-Champaign IL United States Advanced Science Research Center City University of New York United States Greenerwave 6 rue Jean Calvin Paris75005 France Institut Langevin 1 rue Jussieu Paris75005 France Fields & Waves Lab Department of Engineering University of Sannio Benevento Italy State Key Laboratory of Millimeter Waves Southeast University Nanjing China Applied Physics Laboratory Johns Hopkins University LaurelMD20723 United States Department of Electrical and Computer Engineering Department of Physics Quantum Materials Center University of Maryland College ParkMD20742 United States Trento Italy Chengdu China Beijing China Institute of Electromagnetic Space State Key Laboratory of Millimeter Waves Southeast University Nanjing210096 China National Mobile Communications Research Laboratory Southeast University Nanjing China University of Bologna Bologna Italy Bologna Italy Centre for Wireless Innovation Institute of Electronics Communications and Information Technology Queen’s University Belfast Belfast United Kingdom Department of Electrical and Electronic Engineering University of Nottingham Nottingham United Kingdom Department of Electrical and Computer Engineering University of Cyprus Nicosia Cyprus Wireless System Laboratory Corporate Research & Development Center Toshiba Corporation Kawasaki Japan Department of Information Engineering an

This Roadmap takes the reader on a journey through the research in electromagnetic wave propagation control via reconfigurable intelligent surfaces. Meta-surface modelling and design methods are reviewed along with physical realisation techniques. Several wireless applications are discussed, including beam-forming, focusing, imaging, localisation, and sensing, some rooted in novel architectures for future mobile communications networks towards 6G. © 2021, CC BY.

关键词： Electromagnetic wave propagation

A privacy-aware two-factor authentication protocol based on elliptic curve cryptography for wireless sensor networks

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A privacy-aware two-factor authentication protocol based on ...

作者： Jiang, Qi Kumar, Neeraj Ma, Jianfeng Shen, Jian He, Debiao Chilamkurti, Naveen School of Cyber Engineering Xidian University Xi'an China Co-innovation Center for Information Supply and Assurance Technology Anhui University Hefei China Department of Computer Science and Engineering Thapar University Patiala India School of Computer and Software Nanjing University of Information Science and Technology Nanjing China State Key Lab of Software Engineering Computer School Wuhan University Wuhan China Department of Computer Systems and Computer Science La Trobe University Melbourne Australia

As one of the enabling components of Internet of things (IoT), wireless sensor networks (WSNs) have found applications in a wide range of fields, in which outside users need to directly interact with sensors to obtain sensed data. However, WSNs are vulnerable to various attacks over wireless links, such as eavesdropping and tampering. How to ensure that sensitive or critical information is only available to legal users becomes a challenging issue. Two-factor authentication combining password and smart card perfectly matches this requirement because of its practicality. However, a dozen of two-factor authentication protocols have been suggested in recent years. Owing to the challenging mission of reconciling efficiency and security requirements, it is still challenging to propose a privacy-aware two-factor protocol that is capable of providing various security features while maintaining acceptable efficiency. In this paper, we put forward a privacy-aware two-factor authentication protocol based on elliptic curve cryptography for WSNs. Our new protocol accomplishes various security features necessary for real-life application environments while maintaining acceptable efficiency. We prove that the new protocol fulfills mutual authentication in the Burrows–Abadi–Needham logic. Additionally, by way of informal security analysis, we show that the new protocol can withstand a variety of attacks and provide desirable security features. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd.

关键词： Wireless sensor networks

Taking the pulse of COVID-19: A spatiotemporal perspective

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arXiv 2020年

作者： Yang, Chaowei Sha, Dexuan Liu, Qian Li, Yun Lan, Hai Guan, Weihe Wendy Hu, Tao Li, Zhenlong Zhang, Zhiran Thompson, John Hoot Wang, Zifu Wong, David Ruan, Shiyang Yu, Manzhu Richardson, Douglas Zhang, Luyao Hou, Ruizhi Zhou, You Zhong, Cheng Tian, Yifei Beaini, Fayez Carte, Kyla Flynn, Colin Liu, Wei Pfoser, Dieter Bao, Shuming Li, Mei Zhang, Haoyuan Liu, Chunbo Jiang, Jie Du, Shihong Zhao, Liang Lu, Mingyue Li, Lin Zhou, Huan NSF Spatiotemporal Innovation Center George Mason Univ. FairfaxVA22030 United States Department of Geography and GeoInformation Science George Mason Univ. FairfaxVA22030 United States Department of Geographical Sciences University of Maryland College ParkMD20742 United States Center for Geographic Analysis Harvard University CambridgeMA02138 United States Geoinformation and Big Data Research Lab Department of Geography University of South Carolina ColumbiaSC29208 United States Chinese Academy of Surveying and Mapping Beijing China Cloud Compute and Storage Operations Information Technology Services George Mason University FairfaxVA22030 United States Department of Geography Pennsylvania State University State CollegePA16801 United States School of Business Management East China Normal University Zhongshanbei Road Shanghai3663 China School of Mathematical Sciences East China Normal University Zhongshanbei Road Shanghai3663 China Department of Psychology George Mason University FairfaxVA22030 United States Department of Computer Science George Mason University FairfaxVA22030 United States Department of Information Technology George Mason University FairfaxVA22030 United States Department of Biology George Mason University FairfaxVA22030 United States College of Land Science and Technology China Agricultural University Beijing100083 China China Data Institute Ann ArborMI United States Institute of Remote Sensing and GIS Peking University Beijing100871 China Aerospace Information Research Institute Chinese Academy of Sciences Beijing100190 China School of Geomatics and Urban Spatial Informatics Beijing University of Civil Engineering and Architecture Beijing100044 China School of Geographical Sciences Nanjing University of Information Science & Technology 219 Ningliu Road Nanjing Jiangsu210044 China School of Resource and Environmental Sciences Wuhan University 129 Luoyu Rd Wuhan Hubei430079 China School of Geodesy a

The sudden outbreak of the Coronavirus disease (COVID-19) swept across the world in early 2020, triggering the lockdowns of several billion people across many countries, including China, Spain, India, the U.K., Italy, France, Germany, and most states of the U.S. The transmission of the virus accelerated rapidly with the most confirmed cases in the U.S., and New York City became an epicenter of the pandemic by the end of March. In response to this national and global emergency, the NSF Spatiotemporal innovation Center brought together a taskforce of international researchers and assembled implemented strategies to rapidly respond to this crisis, for supporting research, saving lives, and protecting the health of global citizens. This perspective paper presents our collective view on the global health emergency and our effort in collecting, analyzing, and sharing relevant data on global policy and government responses, geospatial indicators of the outbreak and evolving forecasts;in developing research capabilities and mitigation measures with global scientists, promoting collaborative research on outbreak dynamics, and reflecting on the dynamic responses from human societies. Copyright © 2020, The Authors. All rights reserved.

关键词： Coronavirus

Hierarchical feature fusion framework for frequency recognition in SSVEP-based BCIs

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arXiv 2018年

作者： Zhang, Yangsong Yin, Erwei Li, Fali Zhang, Yu Guo, Daqing Yao, Dezhong Xu, Peng School of Computer Science and Technology Southwest University of Science and Technology Mianyang621010 China National Institute of Defense Technology Innovation Academy of Military Sciences China Beijing100081 China Tianjin300450 China Clinical Hospital of Chengdu Brain Science Institute MOE Key Lab for Neuroinformation University of Electronic Science and Technology of China Chengdu610054 China Department of Psychiatry and Behavior Sciences Stanford University StanfordCA94305 United States School of life Science and technology Center for information in medicine University of Electronic Science and Technology of China Chengdu611731 China

Effective frequency recognition algorithms are critical in steady-state visual evoked potential (SSVEP) based brain-computer interfaces (BCIs). In this study, we present a hierarchical feature fusion framework which can be used to design high-performance frequency recognition methods. The proposed framework includes two primary technique for fusing features: spatial dimension fusion (SD) and frequency dimension fusion (FD). Both SD and FD fusions are obtained using a weighted strategy with a nonlinear function. To assess our novel methods, we used the correlated component analysis (CORRCA) method to investigate the efficiency and effectiveness of the proposed framework. Experimental results were obtained from a benchmark dataset of thirty-five subjects and indicate that the extended CORRCA method used within the framework significantly outperforms the original CORCCA method. Accordingly, the proposed framework holds promise to enhance the performance of frequency recognition methods in SSVEP-based BCIs. Copyright © 2018, The Authors. All rights reserved.

关键词： Brain computer interface

The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles