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Linearity assessment between lower limb joint angles and angular accelerations at standard maximum vertical jumps with long-short and no countermovement

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Gait & Posture 2023年 106卷 S174-S175页

作者： Rodrigues, Carlos Correia, Miguel Abrantes, João Benedetti, Marco Nadal, Jurandir Faculty of Engineering- University of Porto Biomedical Engineering Program Porto Portugal INESC TEC - Institute for Systems and Computer Engineering- Technology and Science C-BER - Centre for Biomedical Engineering Research Porto Portugal Faculty of Engineering- University of Porto Department of Electrical and Computer Engineering Porto Portugal CICANT - Centre for Research in Applied Communication- Culture and New Technologies MovLab - Laboratory of Technologies for Interactions and Interfaces Lisbon Portugal Federal University of Pernambuco Department of Electronic and Systems Recife Brazil Federal University of Rio de Janeiro Biomedical Engineering Program Rio de Janeiro Brazil

IntroductionStandard maximum vertical jump (MVJ) has been applied to assess lower limb long countermovement (CM) on countermovement jump (CMJ) and short CM on drop jump (DJ) for comparison to squat jump (SJ) without CM [1,2]. Research questionNevertheless, the ability for lower limb joint accelerations depending on lower limb joint angles at long, short and no CM remains an open issue [3,4], in particular linearity assessment of these relations at long, short and no CM in association with MVJ whole-body impulsion. MethodsFor this reason, we applied piecewise linear detection of segmented subphases on lower limb joint angles ( θ)-angular acceleration ( α) diagrams for the hip (H), knee (K) and ankle (A) during impulse phases on CMJ, DJ and SJ. Selected sample corresponds to best MVJ trials based on higher flight-time of 3 CMJ, DJ and SJ repetitions for six healthy untrained subjects with ages (21.5±1.4) years, (76.7±9.3)kg mass and (1.79±0.06)m height. Adhesive reflective markers were applied at lower limb and torso, with sagittal hip, knee, and ankle θ, α obtained by inverse kinematics. H,K,A ( θ, α) diagrams were plotted and impulsion subphases segmented at selected instants of ∂ a/∂ q phase reversal with linear fit by the least-squares method, Fig. 1. Fig. 1. Hip, knee, ankle joint ( θ, α) diagrams at CMJ, DJ, SJ with segmented subphases time span(Δt), |∂α/∂θ| slope magnitudes and R² linear fit regression. ResultsSJ presented larger number of ( θ, α) subphases than DJ, both larger than CMJ with higher |∂ α/∂ θ| variation at DJ and SJ than CMJ, pointing to higher complexity of neuromuscular control and contributing to explain reduced SJ, DJ performance without CM (0.33±0.05)m and with short CM (0.27±0.03)m in relation to CMJ with long CM (0.36±0.04)m for untrained selected subjects, Fig. 1. Thus, despite the larger total time span Δt at CMJ (0.76±0.10)s in relation to SJ (0.36±0.08)s and DJ (0.23±0.05)s, CMJ presented lower number of subphases with longer time span

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Spatial atlas of the mouse central nervous system at molecular resolution (vol 622, pg 552, 2023)

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NATURE 2024年第7993期625卷 E6-E6页

作者： Shi, Hailing He, Yichun Zhou, Yiming Huang, Jiahao Maher, Kamal Wang, Brandon Tang, Zefang Luo, Shuchen Tan, Peng Wu, Morgan Lin, Zuwan Ren, Jingyi Thapa, Yaman Tang, Xin Chan, Ken Y. Deverman, Benjamin E. Shen, Hao Liu, Albert Liu, Jia Wang, Xiao Broad Institute of MIT and Harvard Cambridge MA USA Department of Chemistry Massachusetts Institute of Technology Cambridge MA USA John A. Paulson School of Engineering and Applied Sciences Harvard University Boston MA USA Computational and Systems Biology PhD Program Massachusetts Institute of Technology Cambridge MA USA Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology Cambridge MA USA Department of Biology Massachusetts Institute of Technology Cambridge MA USA Klarman Cell Observatory Broad Institute of MIT and Harvard Cambridge MA USA Department of Chemistry and Chemical Biology Harvard University Cambridge MA USA Stanley Center for Psychiatric Research Broad Institute of MIT and Harvard Cambridge MA USA

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Parallel 3D temperature image reconstruction using multi-color magnetic particle imaging (MPI)

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AIP Conference Proceedings 2024年第1期3230卷

作者： Klaus N. Quelhas Mark-Alexander Henn Ricardo Farias Weston L. Tew Solomon I. Woods National Institute of Standards and Technology (NIST) 100 Bureau Drive Gaithersburg MD USA Systems Engineering and Computer Science Program (PESC) Federal University of Rio de Janeiro Rio de Janeiro RJ Brazil College of Computer Mathematical & Natural Sciences University of Maryland 7998 Regents Dr College Park MD USA

Magnetic Particle Imaging (MPI) is a novel technique developed for remotely detecting magnetic nanoparticle (MNP) tracers, with great potential for biomedical imaging (as an alternative to traditional methods like MRI or CT), cell tracking, targeted drug delivery and magnetic hyperthermia. More recently, MPI has been studied as a potential method of non-contact temperature measurement. This work presents a simulation study of the multi-color MPI method tailored for 3D temperature imaging, discusses the feasibility of the method for 3D temperature measurements, and shows a parallel implementation of the multi-color T-MPI reconstruction algorithm in graphics processing unit (GPU). While the use of the parallel algorithm resulted in executions about 40x faster when compared to the serial implementation, the method exhibited serious limitations in accurately resolving particle temperatures between the calibration temperatures by interpolation.

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What we should learn from pandemic publishing

arXiv

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arXiv 2024年

作者： Sikdar, Satyaki Venturini, Sara Charpignon, Marie-Laure Kumar, Sagar Rinaldi, Francesco Tudisco, Francesco Fortunato, Santo Majumder, Maimuna S. Luddy School of Informatics Computing and Engineering Indiana University BloomingtonIN United States Department of Computer Science Loyola University Chicago ChicagoIL United States Senseable City Laboratory Massachusetts Institute of Technology CambridgeMA United States Department of Mathematics "Tullio Levi-Civita" University of Padova Padova Italy Institute for Data Systems and Society Massachusetts Institute of Technology CambridgeMA United States Network Science Institute Northeastern University BostonMA United States School of Mathematics The University of Edinburgh Edinburgh United Kingdom School of Mathematics Gran Sasso Science Institute L’Aquila Italy Department of Pediatrics Harvard Medical School BostonMA United States Computational Health Informatics Program Boston Children’s Hospital BostonMA United States

Since the emergence of COVID-19, discussions of ongoing pandemic-related research have accounted for an unprecedented share of media coverage and debate in the public sphere1. The urgency of the pandemic forced researchers to operate on an accelerated timeline, as both policymakers and the public relied on the most current evidence to guide their decisions and behaviors. With high demand for rapid pandemic-related insights and lower barriers to entry via preprint servers, the volume of COVID-19 articles skyrocketed2. The pressing need for research triggered the participation of many researchers with expertise in the science of infectious disease outbreaks (‘outbreak scientists’), who were joined by researchers from other disciplines (‘bellwethers’) and more junior researchers still in training (‘newcomers’) with the common goal of advancing the frontiers of pandemic science and informing policy decisions3. Please see Box 1 for details of this taxonomy. © 2024, CC BY-NC-ND.

关键词： COVID-19

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Autoencoders as Weight Initialization of Deep Classification Networks for Cancer versus Cancer Studies

arXiv

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arXiv 2020年

作者： Ferreira, Mafalda Falcão Camacho, Rui Teixeira, Luís F. Doctoral Program in Informatics Engineering Faculty of Engineering University of Porto INESC TEC - Institute for Systems and Computer Engineering Technology and Science Porto Portugal Department of Informatics Engineering Faculty of Engineering University of Porto Porto - Portugal

Cancer is still one of the most devastating diseases of our time. One way of automatically classifying tumor samples is by analyzing its derived molecular information (i.e., its genes expression signatures). In this work, we aim to distinguish three different types of cancer: thyroid, skin, and stomach. For that, we compare the performance of a Denoising Autoencoder (DAE) used as weight initialization of a deep neural network. Although we address a different domain problem in this work, we have adopted the same methodology of Ferreira et al.. In our experiments, we assess two different approaches when training the classification model: (a) fixing the weights, after pre-training the DAE, and (b) allowing fine-tuning of the entire classification network. Additionally, we apply two different strategies for embedding the DAE into the classification network: (1) by only importing the encoding layers, and (2) by inserting the complete autoencoder. Our best result was the combination of unsupervised feature learning through a DAE, followed by its full import into the classification network, and subsequent fine-tuning through supervised training, achieving an F1 score of 98.04% ± 1.09 when identifying cancerous thyroid samples. Copyright © 2020, The Authors. All rights reserved.

关键词： Classification (of information)

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Accurately predicting anticancer peptide using an ensemble of heterogeneously trained classifiers

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Informatics in Medicine Unlocked 2023年 42卷

作者： Azim, Sayed Mehedi Sabab, Noor Hossain Nuri Noshadi, Iman Alinejad-Rokny, Hamid Sharma, Alok Shatabda, Swakkhar Dehzangi, Iman Center for Computational and Integrative Biology Rutgers University Camden 08102 NJ United States Department of Computer Science and Engineering United International University Plot 2 United City Madani Avenue BaddaDhaka 1212 Bangladesh Department of Bioengineering University of California Riverside 92507 CA United States BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering The University of New South Wales (UNSW Sydney) Sydney NSW 2052 Australia UNSW Data Science Hub UNSW Sydney Sydney NSW 2052 Australia Health Data Analytics Program AI-enabled Processes Research Centre Macquarie University Sydney 2109 Australia Institute for Integrated and Intelligent Systems Griffith University Brisbane Australia Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama 230-0045 Japan Department of Computer Science Rutgers University Camden 08102 NJ United States

The use of therapeutic peptides for the treatment of cancer has received tremendous attention in recent years. Anticancer peptides (ACPs) are considered new anticancer drugs which have several advantages over chemistry-based drugs including high specificity, strong tumor penetration capacity, and low toxicity level for normal cells. Due to the rise of experimentally verified bioactive peptides, several in silico approaches became imperative for the investigation of the characteristics of ACPs. In this paper, we proposed a new machine learning tool named iACP-RF that uses a combination of several sequence-based features and an ensemble of three heterogeneously trained Random Forest classifiers to accurately predict anticancer peptides. Experimental results show that our proposed model achieves an accuracy of 75.9% which outperforms other state-of-the-art methods by a significant margin. We also achieve 0.52, 75.6%, and 76.2% in terms of Matthews Correlation Coefficient (MCC), Sensitivity, and Specificity, respectively. iACP-RF as a standalone tool and its source code are publicly available at: https://***/MLBC-lab/iACP-RF. © 2023 The Authors

关键词： Anticancer peptides Ensemble learning Feature extraction Heterogeneous classifiers Machine learning Random Forest

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Estimation of obesity levels based on computational intelligence

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Informatics in Medicine Unlocked 2020年 21卷

作者： Cervantes, Rodolfo Cañas Palacio, Ubaldo Martinez Department of Computer Science and Electronics Universidad de la Costa CUC. Faculty Teacher Systems Engineering Program Colombia

Obesity is a worldwide disease that affects people of all ages and gender;in consequence, researchers have made great efforts to identify factors that cause it early. In this study, an intelligent method is created, based on supervised and unsupervised techniques of data mining such as Simple K-Means, Decision Trees (DT), and Support Vector Machines (SVM) to detect obesity levels and help people and health professionals to have a healthier lifestyle against this global epidemic. In this research the primary source of collection was from students 18 and 25 years old at institutions in the countries of Colombia, Mexico, and Peru. The study takes a dataset relating to the main causes of obesity, based on the aim to reference high caloric intake, a decrease of energy expenditure due to the lack of physical activity, alimentary disorders, genetics, socioeconomic factors, and/or anxiety and depression. In the selected dataset, 178 students participated in the study, 81 male and 97 female. Using algorithms including Decision Tree, Support Vector Machine (SVM), and Simple K-Means, the results show a relevant tool to perform a comparative analysis among the mentioned algorithms. © 2020 The Authors

关键词： Decision trees Obesity Simple k-means Support vector machines

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3D-Printed electrochemical sensor-integrated transwell systems

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Microsystems & Nanoengineering 2020年第1期6卷 357-368页

作者： Pradeep Ramiah Rajasekaran Ashley Augustiny Chapin David N.Quan Jens Herberholz William E.Bentley Reza Ghodssi Institute for Systems Research University of MarylandCollege ParkMDUSA Fischell Department of Bioengineering University of MarylandCollege ParkMDUSA Department of Psychology and Neuroscience and Cognitive Science Program University of MarylandCollege ParkMDUSA Institute for Bioscience and Biotechnology Research University of MarylandCollege ParkMDUSA Robert E.Fischell Institute for Biomedical Devices University of MarylandCollege ParkMDUSA Department of Electrical and Computer Engineering University of MarylandCollege ParkMDUSA

This work presents a 3D-printed,modular,electrochemical sensor-integrated transwell system for monitoring cellular and molecular events in situ without sample extraction or microfluidics-assisted downstream *** additive manufacturing techniques such as 3D printing,shadow masking,and molding are used to fabricate this modular system,which is autoclavable,biocompatible,and designed to operate following standard operating protocols(SOPs)of cellular *** to the platform is a flexible porous membrane,which is used as a cell culture substrate similarly to a commercial transwell *** electrochemical sensors fabricated on the membrane allow direct access to cells and their products.A pair of gold electrodes on the top side of the membrane measures impedance over the course of cell attachment and growth,characterized by an exponential decrease(~160%at 10Hz)due to an increase in the double layer capacitance from secreted extracellular matrix(ECM)*** voltammetry(CV)sensor electrodes,fabricated on the bottom side of the membrane,enable sensing of molecular release at the site of cell culture without the need for downstream ***-time detection of ferrocene dimethanol injection across the membrane showed a three order-of-magnitude higher signal at the membrane than in the bulk media after reaching *** modular sensor-integrated transwell system allows unprecedented direct,real-time,and noninvasive access to physical and biochemical information,which cannot be obtained in a conventional transwell system.

关键词： transwell electrochemical culture

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FaSTrack: A modular framework for real-time motion planning and guaranteed safe tracking

arXiv

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arXiv 2021年

作者： Chen, Mo Herbert, Sylvia L. Hu, Haimin Pu, Ye Fisac, Jaime F. Bansal, Somil Han, SooJean Tomlin, Claire J. School of Computing Science Simon Fraser University Canada Department of Mechanical and Aerospace Engineering UC San Diego United States Department of Electrical Engineering Princeton University United States Department of Electrical and Electronic Engineering University of Melbourne Australia Department of Electrical Engineering and Computer Sciences UC Berkeley United States Control and Dynamical Systems Program California Institute of Technology United States

Real-time, guaranteed safe trajectory planning is vital for navigation in unknown environments. However, real-time navigation algorithms typically sacrifice robustness for computation speed. Alternatively, provably safe trajectory planning tends to be too computationally intensive for real-time replanning. We propose FaSTrack, Fast and Safe Tracking, a framework that achieves both real-time replanning and guaranteed safety. In this framework, real-time computation is achieved by allowing any trajectory planner to use a simplified planning model of the system. The plan is tracked by the system, represented by a more realistic, higher-dimensional tracking model. We precompute the tracking error bound (TEB) due to mismatch between the two models and due to external disturbances. We also obtain the corresponding tracking controller used to stay within the TEB. The precomputation does not require prior knowledge of the environment. We demonstrate FaSTrack using Hamilton-Jacobi reachability for precomputation and three different real-time trajectory planners with three different tracking-planning model pairs. Copyright © 2021, The Authors. All rights reserved.

关键词： Trajectories

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Drum-aware ensemble architecture for improved joint musical beat and downbeat tracking

arXiv

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arXiv 2021年

作者： Chiu, Ching-Yu Su, Alvin Wen-Yu Yang, Yi-Hsuan The Graduate Program of Multimedia Systems and Intelligent Computing National Cheng Kung University Academia Sinica Taiwan The Department of Computer Science and Information Engineering National Cheng Kung University Taiwan Yating Music Team Taiwan AI Labs Taiwan Research Center for IT Innovation Academia Sinica Taiwan

This paper presents a novel system architecture that integrates blind source separation with joint beat and downbeat tracking in musical audio signals. The source separation module segregates the percussive and non-percussive components of the input signal, over which beat and downbeat tracking are performed separately and then the results are aggregated with a learnable fusion mechanism. This way, the system can adaptively determine how much the tracking result for an input signal should depend on the input's percussive or non-percussive components. Evaluation on four testing sets that feature different levels of presence of drum sounds shows that the new architecture consistently outperforms the widely-adopted baseline architecture that does not employ source separation. Copyright © 2021, The Authors. All rights reserved.

关键词： Blind source separation

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