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20th Ibero-American Conference on Software engineering, CIbSE 2017

作者： Ribeiro, Talita Vieira Travassos, Guilherme Horta PESC/COPPE/UFRJ - Systems Engineering and Computer Science Program Centro de Tecnologia Federal University of Rio de Janeiro Cidade Universitária Bloco H Sala 319 Rio de Janeiro RJ Brazil

ISBN: (纸本)9789873806988

Context: Several code guidelines aim at providing a common perspective on the readability and comprehensibility of source code. However, in many cases, they are contradictory on how to improve these quality characteristics. Objective: To analyze the influence of three contradictory source code attributes - indentation spacing, identifier length and code size - on the source code reada-bility and comprehensibility, interpreting whether programming experience and domain knowledge can support explaining these contradictions. Method: To per-form an empirical study with software developers collecting quantitative (Likert scale) and qualitative data to assess the readability and comprehensibility of de-velopers regarding Python snippets. To observe eventual perceptions contradic-tions and whether their levels of experience and knowledge have something to do with such contrary results. Results: Regardless their programming experience, 4-spaces indentation dominated the readability preference of participants. While the readability and comprehensibility preferences towards long and complete-word identifiers were mostly true for both novice/experts, developers with more experience and low domain knowledge level seemed to be more affected by the length of identifiers. Furthermore, while all participants showed more positive comprehensibility perceptions for Pythin snippets with more lines of code, their readability perceptions regardnig code size were contradictory since the less experienced participants preferred more lines of code and the more experienced ones prefer fewer lines. Conclusion: The results presented in the technical literature seemed to be caused by the interchangeable use of the readability and comprehensibility concepts. Further investigation is still needed to observe whether other confounding factors might support the explanation of such contrary results.

关键词： Codes (symbols)

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Sherlock: Capturing Probe Requests for Automatic Presence Detection

Sherlock: Capturing Probe Requests for Automatic Presence De...

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International Conference on Computer Supported Cooperative Work in Design

作者： Luiz Oliveira João Henrique Daniel Schneider Jano de Souza Sérgio Rodriques Weiming Sherr IFRJ Federal Institute of Rio de Janeiro Brazil Systems Engineering and Computer Science Program/COPPE Federal University of Rio de Janeiro Brazil Tércio Pacitti Institute of Computer Applications and Research (NCE) Federal University of Rio de Janeiro Brazil National Research Council Canada Constructicn Research Centre Canada

The ubiquity of smartphones creates great opportunities for participatory sensing, where people can implicitly contribute observations about their local environments through sensors such as cameras and accelerometers. The collected data can then be aggregated and used to benefit the crowd in some way. In this paper, we report on the current development of Sherlock, a device capable of automatically detecting the presence of people in localities through evidences left by smartphones called probe requests, without any user intervention. To validate the proposed mechanism implemented in the device, we performed an experiment with ten participants in six rounds where it was possible to automatically detect 41 presence events, of which 66% could be detected within less than 30s. The implicit crowdsourcing mechanism behind this approach may allow real-time monitoring of people flows in public environments, which can enable, among other things, energy systems to be automatically orchestrated according to demand, reducing associated costs.

关键词： Probes Wireless fidelity Smart phones Wireless networks Monitoring Prototypes

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A multi-protease, multi-dissociation, bottom-up-to-top-down proteomic view of the Loxosceles intermedia venom

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Scientific Data 2017年第1期4卷 170090-170096页

作者： Trevisan-Silva, Dilza Bednaski, Aline V. Fischer, Juliana S.G. Veiga, Silvio S. Bandeira, Nuno Guthals, Adrian Marchini, Fabricio K. Leprevost, Felipe V. Barbosa, Valmir C. Senff-Ribeiro, Andrea Carvalho, Paulo C. Department of Cell Biology Federal University of Paraná Curitiba 81531-980 Brazil Computational Mass Spectrometry and Proteomics Group Carlos Chagas Institute Fiocruz Curitiba 81.350-010 Brazil Center for Computational Mass Spectrometry University of California San Diego 92093-0404 United States Functional Genomics Laboratory Carlos Chagas Institute Fiocruz Curitiba 81.350-010 Brazil Mass Spectrometry Facility RPT02H Carlos Chagas Institute Fiocruz Curitiba 81.350-010 Brazil Systems Engineering and Computer Science Program COPPE Federal University of Rio de Janeiro Rio de Janeiro 21941-914 Brazil Laboratory of Toxinology Fiocruz Rio de Janeiro 21040-900 Brazil

Venoms are a rich source for the discovery of molecules with biotechnological applications, but their analysis is challenging even for state-of-the-art proteomics. Here we report on a large-scale proteomic assessment of the venom of Loxosceles intermedia, the so-called brown spider. Venom was extracted from 200 spiders and fractioned into two aliquots relative to a 10 kDa cutoff mass. Each of these was further fractioned and digested with trypsin (4 h), trypsin (18 h), pepsin (18 h), and chymotrypsin (18 h), then analyzed by MudPIT on an LTQ-Orbitrap XL ETD mass spectrometer fragmenting precursors by CID, HCD, and ETD. Aliquots of undigested samples were also analyzed. Our experimental design allowed us to apply spectral networks, thus enabling us to obtain meta-contig assemblies, and consequently de novo sequencing of practically complete proteins, culminating in a deep proteome assessment of the venom. Data are available via ProteomeXchange, with identifier PXD005523.

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Corrigendum: A review of trends and drivers of greenhouse gas emissions by sector from 1990 to 2018 (2021 Environ. Res. Lett. 16 073005)

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Environmental Research Letters 2022年第4期17卷 049502-049502页

作者： William F Lamb Thomas Wiedmann Julia Pongratz Robbie Andrew Monica Crippa Jos G J Olivier Dominik Wiedenhofer Giulio Mattioli Alaa Al Khourdajie Jo House Shonali Pachauri Maria Figueroa Yamina Saheb Raphael Slade Klaus Hubacek Laixiang Sun Suzana Kahn Ribeiro Smail Khennas Stephane de la Rue du Can Lazarus Chapungu Steven J Davis Igor Bashmakov Hancheng Dai Shobhakar Dhakal Xianchun Tan Yong Geng Baihe Gu Jan Minx Mercator Research Institute on Global Commons and Climate Change Torgauer Straße 12–15 4 EUREF Campus #19 10829 Berlin Germany School of Earth and Environment University of Leeds LS2 9JT Leeds United Kingdom Sustainability Assessment Program School of Civil and Environmental Engineering UNSW Sydney Sydney Australia Max Planck Institute for Meteorology Bundesstrasse 53 20146 Hamburg Germany Department of Geography Ludwig-Maximilians-Universität Munich Luisenstrasse 37 80333 Munich Germany CICERO Center for International Climate Research Oslo Norway European Commission Joint Research Centre Ispra VA Italy PBL Netherlands Environmental Assessment Agency Den Haag The Netherlands Institute of Social Ecology University of Natural Resources and Life Sciences Schottenfeldgasse 29 1070 Vienna Austria Department of Transport Planning TU Dortmund University August-Schmidt-Straße 10 44227 Dortmund Germany Centre for Environmental Policy Imperial College London London United Kingdom School of Geographical Sciences University of Bristol University Road BS8 1SS Bristol United Kingdom International Institute for Applied Systems Analysis (IIASA) Schlossplatz 1 2361 Laxenburg Austria Department of Management Society and Communication Copenhagen Business School Copenhagen Denmark Openexp 17 Bd Lefebvre 75015 Paris France Integrated Research for Energy Environment and Society University of Groningen 9747AG Groningen The Netherlands Department of Geographical Sciences University of Maryland College Park MD 20742 United States of America School of Finance and Management SOAS University of London WC1H 0XG London United Kingdom Institute of Blue and Green Development Weihai Institute of Interdisciplinary Research Shandong University Weihai 264209 People’s Republic of China Federal University of Rio de Janeiro (Universidade Federal do Rio de Janeiro—UFRJ) Transport Engineering Programme (Programa de Engenharia de Transportes—PET) COPPE-UFRJ Rio de Janeiro Brazil Energy

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Information Extraction to Improve Link Prediction in Scientific Social Networks

Information Extraction to Improve Link Prediction in Scienti...

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IEEE International Conference on Computer Supported Cooperative Work in Design

作者： Victor Stroele Fernanda Campos Crystiam K. Pereira Geraldo Zimbrao Jano M. Souza PGCC - Postgraduate Program in Computer Science UFJF - Federal University of Juiz de Fora COPPE - Systems Engineering and Computer Program UFRJ - Federal University of Rio de Janeiro

ISBN: (纸本)9781509019168

Link Prediction is a classic social networks analysis problem. Knowing in advance future actions in social network can help, for example, agents decision. Link Prediction techniques are based on metrics that have different approaches. In this paper, we model a multi-relational scientific social network to assess the impact of content extraction on topological metrics. Thus, a metric composed of topological and semantic approach is proposed to solve link prediction problem. The results were compared with those presented by Katz metric.

关键词： Information Extraction Link Prediction Scientific Social Network

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Assembling a Network out of Ambiguous Patches

Assembling a Network out of Ambiguous Patches

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Annual Allerton Conference on Communication, Control, and Computing

作者： Lyudmila Yartseva Jefferson Elbert Sim?es Matthias Grossglauser School of Computer and Communication Sciences école Polytechnique Fédérale de Lausanne (EPFL) Switzerland Systems Engineering and Computer Science Program COPPE Federal University of Rio de Janeiro Brazil

ISBN: (纸本)9781509045518

Many graph mining and network analysis problems rely on the availability of the full network over a set of nodes. But inferring a full network is sometimes non-trivial if the raw data is in the form of many small patches or subgraphs, of the true network, and if there are ambiguities in the identities of nodes or edges in these patches. This may happen because of noise or because of the nature of data;for instance, in social networks, names are typically not unique. Graph assembly refers to the problem of reconstructing a graph from these many, possibly noisy, partial observations. Prior work suggests that graph assembly is essentially impossible in regimes of interest when the true graph is Erdos-Rényi. The purpose of the present paper is to show that a modest amount of clustering is sufficient to assemble even very large graphs. We introduce the G(n,p;q) random graph model, which is the random closure over all open triangles of a G(n,p) Erdos-Rényi, and show that this model exhibits higher clustering than an equivalent Erdos-Rényi . We focus on an extreme case of graph assembly: the patches are small (1-hop egonets) and are unlabeled. We show that in realistic regimes, graph assembly is fundamentally feasible, because we can identify, for every edge e, a subgraph induced by its neighbors that is unique and present in every patch containing e. Using this result, we build a practical algorithm that uses canonical labeling to reconstruct the original graph from noiseless patches. We also provide an achievability result for noisy patches, which are obtained by edge-sampling the original egonets.

关键词： mining network analysis

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An information visualization feature model for supporting the selection of software visualizations 22

An information visualization feature model for supporting th...

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22nd International Conference on program Comprehension, ICPC 2014

作者： Vasconcelos, Renan Schots, Marcelo Werner, Cláudia Systems Engineering and Computer Science Program COPPE/UFRJ PO Box 68511 Rio de Janeiro RJCEP21945-970 Brazil

ISBN: (纸本)9781450328791

Software development comprises the execution of a variety of tasks, such as bug discovery, finding reusable assets, dependency analysis etc. A better understanding of the task at hand and its surroundings can improve the development performance in general. Software visualizations can support such understanding by addressing different issues according to the necessity of stakeholders. However, knowing which visualizations better fit a given task in progress is not a trivial skill. In this sense, a feature model, intended for organizing the knowledge of a given domain and allowing the reuse of components, can support the identification, categorization and selection of information visualization elements. This work presents an ongoing domain analysis performed for building an information visualization feature model, whose goal is to support the process of choosing and building proper, suitable software visualizations. Copyright © 2014 ACM.

关键词： Visualization

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An interpolation-free and fitting-less sub-sample time-delay estimation algorithm

An interpolation-free and fitting-less sub-sample time-delay...

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International Conference on Health Informatics, ICHI 2013

作者： Teixeira, César A. Ruano, M. Graça Pereira, W.C.A. Centre for Informatics and Systems University of Coimbra Coimbra Portugal University of Algarve Faro Portugal Biomedical Engineering Program - COPPE Federal University of Rio de Janeiro-UFRJ Rio de Janeiro Brazil

ISBN: (纸本)9783319030043

In this paper we propose a new algorithm for sub-sample time-delay estimation between two discrete-time signals. The new algorithm operates just over the discrete-time signals without the need for interpolation or fitting. The proposed method is compared with a method based on spline fitting, and that is referred to outperform other methods over a broader set of conditions (Viola&Walker, 2005). The new approach, besides presenting a low computational cost (70% less), seemed to outperforms the spline approach in situations of high noise levels (typically signal-to noise ratios smaller than 20dB). © 2014, Springer International Publishing Switzerland.

关键词： Interpolation

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Extracting Semantic Information from Patent Claims Using Phrasal Structure Annotations

Extracting Semantic Information from Patent Claims Using Phr...

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Brazilian Conference on Intelligent systems (BRACIS)

作者： Danilo Silva de Carvalho Felipe Maia Galvão França Priscila Machado Vieira Lima Systems Engineering and Computer Science Program-COPPE Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil Instituto Tércio Pacitti (NCE) Universidade Federal do Rio de Janeiro Rio de Janeiro Brazil

The rapid change of trading values from tangible assets to Intelectual Property has put both businesses and academia in a race to acquire and protect the rights to exploit such property. This is mainly accomplished in the form of patent issuing by the governments, being time consuming and complicated due to the vast amount of documents that need to be analyzed in order to assert the novelty or validity of a patent application. Patent information retrieval research is thus growing quickly to support document analysis across multiple domains and information systems. One of the big challenges in patent analysis is the identification of the elements of innovation (concepts, processes, materials) and the relations between them, in the patent text. This paper presents a method for extracting semantic information from patent claims by using semantic annotations on phrasal structures, abstracting domain ontology information and outputting ontology-friendly structures to achieve generalization. An extraction system built upon the method is briefly evaluated on a document sample from INPI, the Brazilian patent office, a challenging information source.

关键词： Semantics Patents Syntactics Data mining Training Ontologies Testing

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A reconfigurable ray-tracing Multi-Processor SoC with hardware replication-aware instruction set extension

A reconfigurable ray-tracing Multi-Processor SoC with hardwa...

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13th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP 2013

作者： Nery, Alexandre S. Nedjah, Nadia França, Felipe M.G. Jozwiak, Lech Corporaal, Henk LAM - Computer Architecture and Microeletronics Laboratory Systems Engineering and Computer Science Program COPPE Federal University of Rio de Janeiro Brazil Department of Electronics Engineering and Telecommunications Faculty of Engineering State University of Rio de Janeiro Brazil Department of Electrical Engineering - Electronic Systems Eindhoven University of Technology Netherlands

ISBN: (纸本)9783319038582

Application code and processor parallelization, together with instruction set customization, are the most common and effective ways to enhance the performance and efficiency of application-specific processors (ASIPs). Both the effective code parallelization and data/task parallelism exploitation, as well as effective instruction set customization, enable an ASIP to achieve a significant performance improvement using limited extra hardware resources. However, a naive parallelization or instruction set customization may not result in the required performance improvement, leading to a waste of computing and energy resources. Therefore, when performing parallelization or custom instruction selection, complex tradeoffs between processing speed, circuit area and power consumption must be closely observed. In this paper, we propose and discuss an efficient ASIP-based Multi-Processor System-on-a-Chip (MPSoC) design for ray-tracing, exploiting application parallelism and hardware replication-aware instruction set customization. Without hardware sharing among the custom instructions units, the proposed parallel ray-tracer MPSoC design with custom instructions achieves 77% speed up in comparison to a single microprocessor design with the default instruction set. However, with the replication-aware instruction set customization, the speed up increases to 81%. © Springer International Publishing Switzerland 2013.

关键词： Integrated circuit design

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