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检索条件"机构=Cancer Data Science Program"
250 条 记 录,以下是81-90 订阅
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Deep learning-based frozen section to FFPE translation
arXiv
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arXiv 2021年
作者: Ozyoruk, Kutsev Bengisu Can, Sermet Gokceler, Guliz Irem Başak, Kayhan Demir, Derya Serin, Gurdeniz Hacisalihoglu, Uguray Payam Kurtuluş, Emirhan Darbaz, Berkan Lu, Ming Y. Chen, Tiffany Y. Williamson, Drew F.K. Yilmaz, Funda Mahmood, Faisal Turan, Mehmet Institute of Biomedical Engineering Bogazici University Istanbul Turkey Uk Biocentre Tilbrook United Kingdom Department of Pathology Brigham and Women's Hospital Harvard Medical School BostonMA United States Cancer Data Science Program Dana-Farber Cancer Institute BostonMA United States Cancer Program Broad Institute of Harvard and Mit CambradgeMA United States Saǧlik Bilimleri University Kartal Dr.Lütfi Kirdar City Hospital Department of Pathology Istanbul Turkey Faculty of Medicine Department of Pathology Ege University Izmir Turkey Istanbul Yeni Yuzyil University Medical Faculty Gaziosmanpasa Hospital Pathology Department Turkey
Frozen sectioning (FS) is the preparation method of choice for microscopic evaluation of tissues during surgical operations. The high speed of procedure allows pathologists to rapidly assess the key microscopic featur... 详细信息
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Author Correction: Deciphering colorectal cancer genetics through multi-omic analysis of 100,204 cases and 154,587 controls of European and east Asian ancestries
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Nature genetics 2023年 第3期55卷 519-520页
作者: Ceres Fernandez-Rozadilla Maria Timofeeva Zhishan Chen Philip Law Minta Thomas Stephanie Schmit Virginia Díez-Obrero Li Hsu Juan Fernandez-Tajes Claire Palles Kitty Sherwood Sarah Briggs Victoria Svinti Kevin Donnelly Susan Farrington James Blackmur Peter Vaughan-Shaw Xiao-Ou Shu Jirong Long Qiuyin Cai Xingyi Guo Yingchang Lu Peter Broderick James Studd Jeroen Huyghe Tabitha Harrison David Conti Christopher Dampier Mathew Devall Fredrick Schumacher Marilena Melas Gad Rennert Mireia Obón-Santacana Vicente Martín-Sánchez Ferran Moratalla-Navarro Jae Hwan Oh Jeongseon Kim Sun Ha Jee Keum Ji Jung Sun-Seog Kweon Min-Ho Shin Aesun Shin Yoon-Ok Ahn Dong-Hyun Kim Isao Oze Wanqing Wen Keitaro Matsuo Koichi Matsuda Chizu Tanikawa Zefang Ren Yu-Tang Gao Wei-Hua Jia John Hopper Mark Jenkins Aung Ko Win Rish Pai Jane Figueiredo Robert Haile Steven Gallinger Michael Woods Polly Newcomb David Duggan Jeremy Cheadle Richard Kaplan Timothy Maughan Rachel Kerr David Kerr Iva Kirac Jan Böhm Lukka-Pekka Mecklin Pekka Jousilahti Paul Knekt Lauri Aaltonen Harri Rissanen Eero Pukkala Johan Eriksson Tatiana Cajuso Ulrika Hänninen Johanna Kondelin Kimmo Palin Tomas Tanskanen Laura Renkonen-Sinisalo Brent Zanke Satu Männistö Demetrius Albanes Stephanie Weinstein Edward Ruiz-Narvaez Julie Palmer Daniel Buchanan Elizabeth Platz Kala Visvanathan Cornelia Ulrich Erin Siegel Stefanie Brezina Andrea Gsur Peter Campbell Jenny Chang-Claude Michael Hoffmeister Hermann Brenner Martha Slattery John Potter Konstantinos Tsilidis Matthias Schulze Marc Gunter Neil Murphy Antoni Castells Sergi Castellví-Bel Leticia Moreira Volker Arndt Anna Shcherbina Mariana Stern Bens Pardamean Timothy Bishop Graham Giles Melissa Southey Gregory Idos Kevin McDonnell Zomoroda Abu-Ful Joel Greenson Katerina Shulman Flavio Lejbkowicz Kenneth Offit Yu-Ru Su Robert Steinfelder Temitope Keku Bethany van Guelpen Thomas Hudson Heather Hampel Rachel Pearlman Sonja Berndt Richard Hayes Marie Elena Martinez Sushma Thomas Douglas Corley Paul Pharoah Susanna Larsson Yun Yen Heinz-Jo Edinburgh Cancer Research Centre Institute of Genomics and Cancer University of Edinburgh Edinburgh UK. Genomic Medicine Group Instituto de Investigacion Sanitaria de Santiago Santiago de Compostela Spain. Colon Cancer Genetics Group Medical Research Council Human Genetics Unit Institute of Genetics and Cancer University of Edinburgh Edinburgh UK. Danish Institute for Advanced Study Department of Public Health University of Southern Denmark Odense Denmark. Division of Epidemiology Department of Medicine Vanderbilt-Ingram Cancer Center Vanderbilt Epidemiology Center Vanderbilt University Medical Center Nashville TN USA. Division of Genetics and Epidemiology Institute of Cancer Research London UK. Public Health Sciences Division Fred Hutchinson Cancer Research Center Seattle WA USA. Genomic Medicine Institute Cleveland Clinic Cleveland OH USA. Population and Cancer Prevention Program Case Comprehensive Cancer Center Cleveland OH USA. Colorectal Cancer Group ONCOBELL Program Bellvitge Biomedical Research Institute Barcelona Spain. Oncology Data Analytics Program Catalan Institute of Oncology Barcelona Spain. Consortium for Biomedical Research in Epidemiology and Public Health Madrid Madrid Spain. Department of Clinical Sciences Faculty of Medicine University of Barcelona Barcelona Spain. Department of Biostatistics School of Public Health University of Washington Seattle WA USA. Institute of Cancer and Genomic Sciences College of Medical and Dental Sciences University of Birmingham Birmingham UK. Department of Public Health Richard Doll Building University of Oxford Oxford UK. Department of Biomedical Informatics Vanderbilt University School of Medicine Nashville TN USA. Department of Preventive Medicine USC Norris Comprehensive Cancer Center Keck School of Medicine University of Southern California Los Angeles CA USA. Center for Public Health Genomics Department of Public Health Sciences University of Virginia Charlottesville VA USA. De
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The power of specialty palliative care: moving towards a systems perspective
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The Lancet Haematology 2021年 第5期8卷 e376-e381页
作者: Barnato, Amber E Khayal, Inas S The Dartmouth Institute for Health Policy and Clinical Practice Geisel School of Medicine at Dartmouth Lebanon NH United States Department of Biomedical Data Science Geisel School of Medicine at Dartmouth Lebanon NH United States Section of Palliative Care Department of Medicine Dartmouth-Hitchcock Medical Center Lebanon NH United States Department of Computer Science Dartmouth College Hanover NH United States Cancer Population Sciences Program Norris Cotton Cancer Center Lebanon NH United States
Three palliative care clinical trials were presented at the 2020 American Society for Clinical Oncology Annual Meeting. The heterogeneity in populations, models of care, study design, and assessment of clinical outcom...
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Core variables for real-world clinicogenomic data collection in precision oncology
ESMO Real World Data and Digital Oncology
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ESMO Real World data and Digital Oncology 2025年 7卷 100117-100117页
作者: R. Dienstmann A. Hackshaw J.-Y. Blay C. Le Tourneau OC Precision Medicina Oncoclínicas & Co São Paulo Brazil PhD Program Doctoral School University of Vic—Central University of Catalonia Barcelona Spain Oncology Data Science Vall d’Hebron Institute of Oncology Barcelona Spain Cancer Research UK and UCL Cancer Trials Centre University College London London UK Centre Léon Bérard and Université Claude Bernard Lyon France Institut Curie Department of Drug Development and Innovation (D3i) Paris-Saclay University Paris France
Background Precision oncology evidence gaps may be bridged using real-world clinicogenomic data; however, current limitations compromise real-world data collection and evidence generation. We aimed to define a set of ... 详细信息
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Categorization and analysis of 14 computational methods for estimating cell potency from single-cell RNA-seq data
arXiv
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arXiv 2023年
作者: Wang, Qingyang Zhai, Zhiqian Lian, Qiuyu Song, Dongyuan Li, Jingyi Jessica Department of Statistics and Data Science University of California Los AngelesCA90095-1554 United States Wellcome Trust Cancer Research UK Gurdon Institute University of Cambridge Cambridgeshire CambridgeCB2 1QN United Kingdom Bioinformatics Interdepartmental Ph.D. Program University of California Los AngelesCA90095-7246 United States Department of Human Genetics University of California Los AngelesCA90095-7088 United States Department of Computational Medicine University of California Los AngelesCA90095-1766 United States Department of Biostatistics University of California Los AngelesCA90095-1772 United States Radcliffe Institute for Advanced Study Harvard University CambridgeMA02138 United States
In single-cell RNA sequencing (scRNA-seq) data analysis, a critical challenge is to infer hidden cellular dynamic processes from measured static cell snapshots. To tackle this challenge, many computational methods hav... 详细信息
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data efficient and weakly supervised computational pathology on whole slide images
arXiv
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arXiv 2020年
作者: Lu, Ming Y. Williamson, Drew F.K. Chen, Tiffany Y. Chen, Richard J. Barbieri, Matteo Mahmood, Faisal Department of Pathology Brigham and Women’s Hospital Harvard Medical School BostonMA United States Cancer Program Broad Institute of Harvard and MIT CambridgeMA United States Cancer Data Science Dana-Farber Cancer Institute BostonMA United States Department of Biomedical Informatics Harvard Medical School BostonMA United States
The rapidly emerging field of computational pathology has the potential to enable objective diagnosis, therapeutic response prediction and identification of new morphological features of clinical relevance. However, d... 详细信息
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Machine-learned molecular mechanics force field for the simulation of protein-ligand systems and beyond
arXiv
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arXiv 2023年
作者: Takaba, Kenichiro Pulido, Iván Behara, Pavan Kumar Cavender, Chapin E. Friedman, Anika J. Henry, Michael M. MacDermott-Opeskin, Hugo Iacovella, Christopher R. Nagle, Arnav M. Payne, Alexander Matthew Shirts, Michael R. Mobley, David L. Chodera, John D. Wang, Yuanqing Computational and Systems Biology Program Sloan Kettering Institute Memorial Sloan Kettering Cancer Center New YorkNY10065 United States Pharmaceuticals Research Center Advanced Drug Discovery Asahi Kasei Pharma Corporation Shizuoka410-2321 Japan Center for Neurotherapeutics Department of Pathology and Laboratory Medicine University of California IrvineCA92697 United States Skaggs School of Pharmacy and Pharmaceutical Sciences University of California 9500 Gilman Drive La Jolla San DiegoCA92093 United States Department of Chemical and Biological Engineering University of Colorado Boulder BoulderCO80309 United States Open Molecular Software Foundation DavisCA95618 United States Department of Bioengineering University of California Berkeley BerkeleyCA94720 United States Department of Pharmaceutical Sciences University of California IrvineCA92697 United States Tri-Institutional Ph.D. Program in Chemical Biology Memorial Sloan Kettering Cancer Center New YorkNY10065 United States Simons Center for Computational Physical Chemistry Center for Data Science New York University New YorkNY10004 United States
The development of reliable and extensible molecular mechanics (MM) force fields—fast, empirical models characterizing the potential energy surface of molecular systems—is indispensable for biomolecular simulation a... 详细信息
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MULTIMODAL AI-BASED ASSESSMENT OF RENAL ALLOGRAFT BIOPSIES
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Journal of Pathology Informatics 2022年 13卷 100059-100059页
作者: Sahai, Sharifa Chen, Richard J. Lipkova, Jana Chen, Kuan Chen, Tiffany Y. Williamson, Drew Wang, Judy J. Weins, Astrid Mahmood, Faisal Department of Pathology Brigham and Women's Hospital Harvard Medical School Boston MA United States Broad Institute of Harvard and MIT Cambridge MA United States Data Science Program Dana-Farber Cancer Institute Boston MA United States
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The CLL-1100 Project: Towards Complete Genomic Characterization and Improved Prognostics for CLL
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BLOOD 2020年 136卷 3-4页
作者: Knisbacher, Binyamin A. Lin, Ziao Hahn, Cynthia K. Nadeu, Ferran Duran-Ferrer, Marti Stevenson, Kristen E. Tausch, Eugen Barbera-Mourelle, Alex Dunford, Andrew Anand, Shankara Delgado, Julio Hess, Julian M. Taylor-Weiner, Amaro Kretzmer, Helene Munoz, Pablo Bousquets Shaughnessy, Conner J. Fernandes, Stacey M. Sivina, Mariela Rassenti, Laura Z. Meissner, Alexander Wiestner, Adrian Burger, Jan A. Kipps, Thomas J. Brown, Jennifer R. Hallek, Michael Aguet, Francois Neuberg, Donna S. Puente, Xose S. Stewart, Chip Martin-Subero, Jose I. Stilgenbauer, Stephan Wu, Catherine J. Campo, Elias Getz, Gad Broad Institute of MIT and Harvard Cambridge MA Harvard Medical School Boston MA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA Institut d’Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS) Barcelona Spain Centro de Investigación Biomédica en Red de Cáncer (CIBERONC) Madrid Spain Department of Data Science Dana-Farber Cancer Institute Boston MA Department of Internal Medicine III Ulm University Ulm Germany Center for Cancer Research Massachusetts General Hospital Boston MA Servicio de Hematología Hospital Clínic IDIBAPS Barcelona Spain Department of Genome Regulation Max Planck Institute for Molecular Genetics Berlin Germany Departamento de Bioquímica y Biología Molecular Instituto Universitario de Oncología Universidad de Oviedo Oviedo Spain Dana-Farber Cancer Institute Boston MA Cancer Program Broad Institute of MIT and Harvard Cambridge MA Department of Leukemia UT M.D. Anderson Cancer Center Houston TX Moores Cancer Center University of California San Diego La Jolla CA Department of Stem Cell and Regenerative Biology Harvard University Cambridge MA Department of Pathology Massachusetts General Hospital Boston MA
Although chronic lymphocytic leukemia (CLL) has been consistently at the forefront of genomic discovery, complete characterization of its genomic landscape has been limited by sample size and cohort diversity. To addr...
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Learn-Morph-Infer: a new way of solving the inverse problem for brain tumor modeling
arXiv
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arXiv 2021年
作者: Ezhov, Ivan Scibilia, Kevin Franitza, Katharina Steinbauer, Felix Shit, Suprosanna Zimmer, Lucas Lipkova, Jana Kofler, Florian Paetzold, Johannes Canalini, Luca Waldmannstetter, Diana Menten, Martin J. Metz, Marie Wiestler, Benedikt Menze, Bjoern Department of Informatics TUM Munich Germany TranslaTUM - Central Institute for Translational Cancer Research TUM Munich Germany Department of Mechanical Engineering TUM Munich Germany Department of Quantitative Biomedicine UZH Zurich Switzerland Department of Pathology Brigham and Women’s Hospital Harvard Medical School BostonMA United States Broad Institute of Harvard MIT CambridgeMA United States Data Science Program Dana-Farber Cancer Institute BostonMA United States Fraunhofer MEVIS Bremen Germany Neuroradiology Department of Klinikum Rechts der Isar TUM Munich Germany
Current treatment planning of patients diagnosed with a brain tumor, such as glioma, could significantly benefit by accessing the spatial distribution of tumor cell concentration. Existing diagnostic modalities, e.g. ... 详细信息
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