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Context-Aware Feature Attention Model for Coreference Resolution on Biomedical Texts

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Research Square

Research Square 2021年

作者： Li, Yufei Zhou, Xiangyu Ma, Jie Ma, Xiaoyong Li, Chen School of Computer Science and Technology Xi’an Jiaotong University Shaanxi Xi’an China National Engineering Lab for Big Data Analytics Xi’an Jiaotong University Shaanxi Xi’an China Shaanxi Province Key Laboratory of Satellite and Terrestrial Network Technology Research and Development Xi’an Jiaotong University Shaanxi Xi’an China

Background: Bio-entity Coreference resolution is an important task to gain a complete understanding of biomedical texts automatically. Previous neural network-based studies on this topic are domain system based methods which rely on some domain-specific information integration. However, for the identical mentions, this may lead to misleading information, as the model tends to get similar or even identical representations, which further leads to wrongful predictions. Results: we propose a new context-aware Feature Attention model to distinguish identical mentions effectively to better resolve coreference. The new model can represent identical mentions based on different contexts by adaptively exploiting features effectively. The proposed model substantially outperforms the state-of-the-art baselines on the BioNLP dataset with a 64.0% F1 score and further demonstrates superior performance on the differential representation and coreferential link of identical mentions. Conclusion: The context-aware Feature Attention model adaptively exploit features and represent identical mentions according to different contexts, which significantly makes the system obtain semantic information effectively and make more accurate predictions. Considering that this approach is still limited when context information is insufficient, we expect to utilize such information more fine-grained with the help of the external knowledge base in coreference resolution. © 2021, CC BY.

关键词： Semantics

Dynamics and Resonance Fluorescence from a Superconducting Artificial Atom Doubly Driven by Quantized and Classical Fields

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arXiv 2024年

作者： Ruan, Xinhui Wang, Jia-Heng He, Dong Song, Pengtao Li, Shengyong Zhao, Qianchuan Kuang, L.M. Tsai, Jaw-Shen Zou, Chang-Ling Zhang, Jing Zheng, Dongning Astafiev, O.V. Liu, Yu-Xi Peng, Zhihui Department of Automation Tsinghua University Beijing100084 China Key Laboratory of Low-Dimensional Quantum Structures and Quantum Control of Ministry of Education Department of Physics and Synergetic Innovation Center of Quantum Effects and Applications Hunan Normal University Changsha410081 China School of Integrated Circuits Tsinghua University Beijing100084 China Institute of Physics Chinese Academy of Sciences Beijing100190 China School of Physical Sciences University of Chinese Academy of Sciences Beijing100190 China Center for Quantum Computing RIKEN Saitama351-0198 Japan Graduate School of Science Tokyo University of Science 1-3 Kagurazaka Shinjuku Tokyo162-0825 Japan CAS Key Laboratory of Quantum Information University of Science and Technology of China Hefei Anhui230026 China Hefei National Laboratory Hefei230088 China School of Automation Science and Engineering Xi'an Jiaotong University Xi’an710049 China MOE Key Lab for Intelligent Networks and Network Security Xi'an Jiaotong University Xi’an710049 China Skolkovo Institute of Science and Technology Nobel str. 3 Moscow143026 Russia Moscow Institute of Physics and Technology Institutskiy Pereulok 9 Dolgoprudny141701 Russia Royal Holloway University of London Surrey EghamTW20 0EX United Kingdom

We report an experimental demonstration of resonance fluorescence in a two-level superconducting artificial atom under two driving fields coupled to a detuned cavity. One of the fields is classical and the other is varied from quantum (vacuum fluctuations) to classical one by controlling the photon number inside the cavity. The device consists of a transmon qubit strongly coupled to a one-dimensional transmission line and a coplanar waveguide resonator. We observe a sideband anti-crossing and asymmetry in the emission spectra of the system through a one-dimensional transmission line, which is fundamentally different from the weak coupling case. By changing the photon number inside the cavity, the emission spectrum of our doubly driven system approaches to the case when the atom is driven by two classical bichromatic fields. We also measure the dynamical evolution of the system through the transmission line and study the properties of the first-order correlation function, Rabi oscillations and energy relaxation in the system. The study of resonance fluorescence from an atom driven by two fields promotes understanding decoherence in superconducting quantum circuits and may find applications in superconducting quantum computing and quantum networks. Copyright © 2024, The Authors. All rights reserved.

关键词： Electric lines

BCS-Net: Boundary, Context and Semantic for Automatic COVID-19 Lung Infection Segmentation from CT Images

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arXiv 2022年

作者： Cong, Runmin Yang, Haowei Jiang, Qiuping Gao, Wei Li, Haisheng Wang, Cong Zhao, Yao Kwong, Sam The Institute of Information Science Beijing Jiaotong University Beijing100044 China Beijing Key Laboratory of Big Data Technology for Food Safety Beijing Technology and Business University Beijing100048 China The Department of Computer Science City University of Hong Kong Hong Kong The Beijing Key Laboratory of Advanced Information Science and Network Technology Beijing100044 China The School of Information Science and Engineering Ningbo University Ningbo315211 China The School of Electronic and Computer Engineering Peking University Shenzhen Graduate School Shenzhen518055 China Peng Cheng Laboratory Shenzhen518055 China The Distributed and Parallel Software Lab Huawei Technologies Shenzhen518129 China The City University of Hong Kong Shenzhen Research Institute Shenzhen51800 China

The spread of COVID-19 has brought a huge disaster to the world, and the automatic segmentation of infection regions can help doctors to make diagnosis quickly and reduce workload. However, there are several challenges for the accurate and complete segmentation, such as the scattered infection area distribution, complex background noises, and blurred segmentation boundaries. To this end, in this paper, we propose a novel network for automatic COVID-19 lung infection segmentation from CT images, named BCS-Net, which considers the boundary, context, and semantic attributes. The BCS-Net follows an encoder-decoder architecture, and more designs focus on the decoder stage that includes three progressively Boundary-Context-Semantic Reconstruction (BCSR) blocks. In each BCSR block, the attention-guided global context (AGGC) module is designed to learn the most valuable encoder features for decoder by highlighting the important spatial and boundary locations and modeling the global context dependence. Besides, a semantic guidance (SG) unit generates the semantic guidance map to refine the decoder features by aggregating multi-scale high-level features at the intermediate resolution. Extensive experiments demonstrate that our proposed framework outperforms the existing competitors both qualitatively and quantitatively. © 2022, CC BY-NC-SA.

关键词： COVID-19

Mamba-Sea: A Mamba-based Framework with Global-to-Local Sequence Augmentation for Generalizable Medical Image Segmentation

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arXiv 2025年

作者： Cheng, Zihan Guo, Jintao Zhang, Jian Qi, Lei Zhou, Luping Shi, Yinghuan Gao, Yang Shanghai Jiao Tong University School of Medicine Shanghai200025 China National Institute of Healthcare Data Science Nanjing University Jiangsu Nanjing210093 China State Key Laboratory for Novel Software Technology the National Institute of Healthcare Data Science Nanjing University Jiangsu Nanjing210093 China School of Computer Science and Engineering Key Lab of Computer Network and Information Integration Southeast University Jiangsu Nanjing211189 China School of Electrical and Information Engineering The University of Sydney SydneyNSW2006 Australia

To segment medical images with distribution shifts, domain generalization (DG) has emerged as a promising setting to train models on source domains that can generalize to unseen target domains. Existing DG methods are mainly based on CNN or ViT architectures. Recently, advanced state space models, represented by Mamba, have shown promising results in various supervised medical image segmentation. The success of Mamba is primarily owing to its ability to capture long-range dependencies while keeping linear complexity with input sequence length, making it a promising alternative to CNNs and ViTs. Inspired by the success, in the paper, we explore the potential of the Mamba architecture to address distribution shifts in DG for medical image segmentation. Specifically, we propose a novel Mamba-based framework, Mamba-Sea, incorporating global-to-local sequence augmentation to improve the model’s generalizability under domain shift issues. Our Mamba-Sea introduces a global augmentation mechanism designed to simulate potential variations in appearance across different sites, aiming to suppress the model’s learning of domain-specific information. At the local level, we propose a sequence-wise augmentation along input sequences, which perturbs the style of tokens within random continuous sub-sequences by modeling and resampling style statistics associated with domain shifts. To our best knowledge, Mamba-Sea is the first work to explore the generalization of Mamba for medical image segmentation, providing an advanced and promising Mamba-based architecture with strong robustness to domain shifts. Remarkably, our proposed method is the first to surpass a Dice coefficient of 90% on the Prostate dataset, which exceeds previous SOTA of 88.61%. The code is available at https://***/orange-czh/Mamba-Sea. Copyright © 2025, The Authors. All rights reserved.

关键词： Image segmentation

Weakly supervised learning for textbook question answering

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TechRxiv

TechRxiv 2021年

作者： Ma, Jie Chai, Qi Huang, Jingyue Liu, Jun You, Yang Zheng, Qinghua National Engineering Lab for Big Data Analytics School of Computer Science and Technology Xi’an Jiaotong University Shaanxi Xi’an710049 China Shaanxi Province Key Laboratory of Satellite and Terrestrial Network Tech. R&D School of Computer Science and Technology Xi’an Jiaotong University Shaanxi Xi’an710049 China The High Performance Computing for Artificial intelligence Lab Department of Computer Science National University of Singapore 117417 Singapore

Textbook Question Answering (TQA) is the task of answering diagram and non-diagram questions given large multimodal contexts consisting of abundant text and diagrams. Deep text understandings and effective learning of diagram semantics are important for this task due to its specificity. In this paper, we propose a Weakly Supervised learning method for TQA (WSTQ), which regards the incompletely accurate results of essential intermediate procedures for this task as supervision to develop Text Matching (TM) and Relation Detection (RD) tasks and then employs the tasks to motivate itself to learn strong text comprehension and excellent diagram semantics respectively. Specifically, we apply the result of text retrieval to build positive as well as negative text pairs. In order to learn deep text understandings, we first pre-train the text understanding module of WSTQ on TM and then fine-tune it on TQA. We build positive as well as negative relation pairs by checking whether there is any overlap between the items/regions detected from diagrams using object detection. The RD task forces our method to learn the relationships between regions, which are crucial to express the diagram semantics. We train WSTQ on RD and TQA simultaneously, i.e., multitask learning, to obtain effective diagram semantics and then improve the TQA performance. Extensive experiments are carried out on CK12-QA and AI2D to verify the effectiveness of WSTQ. Experimental results show that our method achieves significant accuracy improvements of 5.02% and 4.12% on test splits of the above datasets respectively than the current state-of-the-art baseline. We have released our code on https://***/dr-majie/WSTQ. © 2021, CC BY.

关键词： Semantics

Transformation driven visual reasoning

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arXiv 2020年

作者： Hong, Xin Lan, Yanyan Pang, Liang Guo, Jiafeng Cheng, Xueqi CAS Key Laboratory of Network Data Science and Technology Institute of Computing Technology Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China Institute for AI Industry Research Tsinghua University Beijing China

This paper defines a new visual reasoning paradigm by introducing an important factor, i.e. transformation. The motivation comes from the fact that most existing visual reasoning tasks, such as CLEVR in VQA, are solely defined to test how well the machine understands the concepts and relations within static settings, like one image. We argue that this kind of state driven visual reasoning approach has limitations in reflecting whether the machine has the ability to infer the dynamics between different states, which has been shown as important as state-level reasoning for human cognition in Piaget’s theory. To tackle this problem, we propose a novel transformation driven visual reasoning task. Given both the initial and final states, the target is to infer the corresponding single-step or multi-step transformation, represented as a triplet (object, attribute, value) or a sequence of triplets, respectively. Following this definition, a new dataset namely TRANCE is constructed on the basis of CLEVR, including three levels of settings, i.e. Basic (single-step transformation), Event (multi-step transformation), and View (multi-step transformation with variant views). Experimental results show that the state-of-the-art visual reasoning models perform well on Basic, but are still far from human-level intelligence on Event and View. We believe the proposed new paradigm will boost the development of machine visual reasoning. More advanced methods and real data need to be investigated in this direction. The resource of TVR is available at https://***/TVR. Copyright © 2020, The Authors. All rights reserved.

关键词： Machine learning

Video Anomaly Detection Using Open data Filter and Domain Adaptation

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Video Anomaly Detection Using Open Data Filter and Domain Ad...

IEEE Visual Communications and Image Processing (VCIP)

作者： Chen Zhang Guorong Li Li Su Weigang Zhang Qingming Huang School of Computer Science and Technology UCAS Beijing China Key Lab of Big Data Mining and Knowledge Management UCAS Beijing China Harbin Institute of Technology Weihai China Key Lab of Intelligent Information Processing ICT CAS Beijing China

ISBN: (数字)9781728180687

ISBN: (纸本)9781728180694

Video anomaly detection is a very challenging task because of the rarity, openness, and the definition of the anomalies. Researchers pay more attention to the characteristics of anomalies and have proposed a variety of anomaly detection models. However, most existing methods only use normal events to construct anomaly detection models and ignore the diversity and openness of normal events. Actually, because real-world video data often have an open-ended distribution, some normal patterns hardly ever appeared in the training data. In addition, analogous to human experience in identifying anomalies, rare abnormal events can play a certain role in the detection of similar abnormal events in the dataset. Therefore, assuming that a small number of abnormal events are known, we propose a novel supervised anomaly detection model which explicitly detects open normal events and open abnormal events in the dataset and treats open data and seen data with different classifiers. First, we use the training video to train an imbalanced classifier as the seen data classifier. Then, during the testing phase, an open data filter module isused to divide the test data into seen data and open data. Finally, we directly use the seen data classifier to generate anomaly scores for the seen test data. For the open test data, we adopt a domain adaptation method to reduce the distribution difference between it and the training data and train a new classifier to score for it. Extensive experimental results prove the effectiveness of our model.

关键词： Training Training data Anomaly detection Feature extraction data models Testing Adaptation models

Design of Target Behavior Intelligent Analysis System Based on Distributed Computing

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Design of Target Behavior Intelligent Analysis System Based ...

2019 IEEE International Conference on Signal, Information and data Processing, ICSIDP 2019

作者： Pan, Xinlong Cheng, Xueqi Yao, Libo Zhu, Zhenqiu DIng, Biao Tang, Tiantian Li, Minbo Liu, Chuanhui Institute of Information Fusion Naval Aviation University Yantai China CAS Key Laboratory of Network Data Science Technology Inistitute of Computing Technology Chinese Academy of Sciences Beijing China School of Software Fudan University Shanghai China

ISBN: (纸本)9781728123455

Through the fusion processing of target data obtained by radar, electronic reconnaissance, space reconnaissance, technical reconnaissance and civil cooperative system in early warning and surveillance system, multidimensional target data including explicit state information such as target attributes, type, position, speed and course could be obtained. The latent potential information, such as regular behavior, intention and threat degree, need to be mastered by human intelligence and experience analysis. It is urgent to use big data mining technology to realize intelligent analysis of target behavior. Based on the analysis of big data related technologies, this paper designs an intelligent target behavior analysis system based on distributed computing, which provides theoretical and technical support for intelligent upgrading of intelligence processing systems and command decision systems. © 2019 IEEE.

关键词： data mining

Boosting Connectivity in Retinal Vessel Segmentation via a Recursive Semantics-Guided network 23rd

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Boosting Connectivity in Retinal Vessel Segmentation via a R...

23rd International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2020

作者： Xu, Rui Liu, Tiantian Ye, Xinchen Lin, Lin Chen, Yen-Wei DUT-RU International School of Information Science and Engineering Dalian University of Technology Dalian China DUT-RU Co-Research Center of Advanced ICT for Active Life Dalian China Key Laboratory for Ubiquitous Network and Service Software of Liaoning Province Dalian China College of Software Dalian University of Technology Dalian China College of Information Science and Engineering Ritsumeikan University Kusatsu Japan Research Center of Healthcare Data Science Zhejiang Lab Hangzhou China

ISBN: (纸本)9783030597214

Many deep learning based methods have been proposed for retinal vessel segmentation, however few of them focus on the connectivity of segmented vessels, which is quite important for a practical computer-aided diagnosis system on retinal images. In this paper, we propose an efficient network to address this problem. A U-shape network is enhanced by introducing a semantics-guided module, which integrates the enriched semantics information to shallow layers for guiding the network to explore more powerful features. Besides, a recursive refinement iteratively applies the same network over the previous segmentation results for progressively boosting the performance while increasing no extra network parameters. The carefully designed recursive semantics-guided network has been extensively evaluated on several public datasets. Experimental results have shown the efficiency of the proposed method. © 2020, Springer Nature Switzerland AG.

关键词： Semantics