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Learning discriminative foreground-and-background features for few-shot segmentation

Multimedia Tools and Applications 2024年第18期83卷 55999-56019页

作者： Jiang, Cong Zhou, Yange Liu, Zhaoshuo Feng, Chaolu Li, Wei Yang, Jinzhu School of Computer Science and Engineering Northeastern University Liaoning Shenyang110819 China College of Science Northeastern University Liaoning Shenyang110819 China Key Laboratory of Intelligent Computing in Medical Image Ministry of Education Liaoning Shenyang110819 China National Frontiers Science Center for Industrial Intelligence and Systems Optimization Liaoning Shenyang110819 China

Few-shot Semantic Segmentation (FSS) endeavors to segment novel categories in a query image by referring to a support set comprising only a few annotated examples. Presently, many existing FSS methodologies primarily embrace the prototype learning paradigm and concentrate on optimizing the matching mechanism. However, these approaches tend to overlook the discrimination between the features of foreground background. Consequently, the segmentation results are often imprecise when it comes to capturing intricate structures, such as boundaries and small objects. In this study, we introduce the Discriminative Foreground-and-Background feature learning Network (DFBNet) to enhance the distinguishability of bilateral features. DFBNet comprises three major modules: a multi-level self-matching module (MSM), a feature separation module (FSM), and a semantic alignment module (SAM). The MSM generates prior masks separately for the foreground and background, employing a self-matching strategy across different feature levels. These prior masks are subsequently used as scaling factors within the FSM, where the features of the query’s foreground and background are independently scaled up and then concatenated along the channel dimension. Furthermore, we incorporate a two-layer Transformer encoder-based semantic alignment module (SAM) in DFBNet to refine the features, thereby creating a greater distinction between the foreground and background features. The performance of DFBNet is evaluated on the PASCAL-5i and COCO-20i benchmarks, demonstrating its superiority over existing solutions and establishing new state-of-the-art results in the field of few-shot semantic segmentation. The codes will be released if this paper is accepted. © The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature 2023.

关键词： Semantic Segmentation

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Continuous-Time Prediction of Industrial Paste Thickener System With Differential ODE-Net

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IEEE/CAA Journal of Automatica Sinica 2022年第4期9卷 686-698页

作者： Zhaolin Yuan Xiaorui Li Di Wu Xiaojuan Ban Nai-Qi Wu Hong-Ning Dai Hao Wang the Beijing Advanced Innovation Center for Materials Genome Engineering Institute of Artificial IntelligenceBeijing Key Laboratory of Knowledge Engineering for Materials ScienceSchool of Computer and Communication EngineeringUniversity of Science and Technology Beijing the Department of ICT and Natural Science Norwegian University of Science and Technology IEEE the Institute of Systems Engineering and Collaborative Laboratory for Intelligent Science and SystemsMacao University of Science and Technology the Department of Computing and Decision Sciences Lingnan University the Department of Computer Science Norwegian University of Science and Technology

It is crucial to predict the outputs of a thickening system,including the underflow concentration(UC)and mud pressure,for optimal control of the *** proliferation of industrial sensors and the availability of thickening-system data make this ***,the unique properties of thickening systems,such as the non-linearities,long-time delays,partially observed data,and continuous time evolution pose challenges on building data-driven predictive *** address the above challenges,we establish an integrated,deep-learning,continuous time network structure that consists of a sequential encoder,a state decoder,and a derivative module to learn the deterministic state space model from thickening *** a case study,we examine our methods with a tailing thickener manufactured by the FLSmidth installed with massive sensors and obtain extensive experimental *** results demonstrate that the proposed continuous-time model with the sequential encoder achieves better prediction performances than the existing discrete-time models and reduces the negative effects from long time delays by extracting features from historical system *** proposed method also demonstrates outstanding performances for both short and long term prediction tasks with the two proposed derivative types.

关键词： Industrial 24 paste thickener ordinary differential equation(ODE)-net recurrent neural network time series prediction

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GeneCompass:deciphering universal gene regulatory mechanisms with a knowledge-informed cross-species foundation model

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细胞研究（英文版） 2024年第12期34卷 830-845页

作者： Xiaodong Yang Guole Liu Guihai Feng Dechao Bu Pengfei Wang Jie Jiang Shubai Chen Qinmeng Yang Hefan Miao Yiyang Zhang Zhenpeng Man Zhongming Liang Zichen Wang Yaning Li Zheng Li Yana Liu Yao Tian Wenhao Liu Cong Li Ao Li Jingxi Dong Zhilong Hu Chen Fang Lina Cui Zixu Deng Haiping Jiang Wentao Cui Jiahao Zhang Zhaohui Yang Handong Li Xingjian He Liqun Zhong Jiaheng Zhou Zijian Wang Qingqing Long Ping Xu The X-Compass Consortiudm Hongmei Wang Zhen Meng Xuezhi Wang Yangang Wang Yong Wang Shihua Zhang Jingtao Guo Yi Zhao Yuanchun Zhou Fei Li Jing Liu Yiqiang Chen Ge Yang Xin Li Baoyang Hu Wei Li Fei Gao Leqian Yu Qi Gu Weiwei Zhai Zhengting Zou Jingqi Yu Wenhui Wu Xinxin Lin Yu Zou Yongshun Ren Fan Li Yixiao Zhao Yike Xin Longfei Han Shuyang Jiang Kai Ma Qicheng Chen Haoyuan Wang Huanhuan Wu Chaofan He Yilong Hu Shuyu Guo Yiyun Li Zaitian Wang Huimin He Shan Zong Jiajia Wang Yan Chen Chunyang Zhang Chengrui Wang Ran Zhang Meng Xiao Yining Wang Xin Qin Jiaxin Qin Chenhao Li Zhufeng Xu Zeyuan Zhang Xiaoning Qi Wuliang Huang Yaoru Luo Qinxuan Luo Ziwen Liu Teng Wang Yiming Huang Shirui Li Kangning Dong Qunlun Shen State Key Laboratory of Stem Cell and Reproductive Biology Institute of ZoologyChinese Academy of SciencesBeijingChina Beijing Key Laboratory of Mobile Computing and Pervasive Device Institute of Computing TechnologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina State Key Laboratory of Multimodal Artificial Intelligence Systems Institute of AutomationChinese Academy of SciencesBeijingChina School of Artificial Intelligence University of Chinese Academy of SciencesBeijingChina State Key Laboratory of Stem Cell and Reproductive Biology Institute of ZoologyChinese Academy of SciencesBeijingChina Institute for Stem Cell and Regenerative Medicine Chinese Academy of SciencesBeijingChina Beijing Institute for Stem Cell and Regenerative Medicine BeijingChina Beijing Key Laboratory of Mobile Computing and Pervasive Device Institute of Computing TechnologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina Research Center for Ubiquitous Computing Systems Institute of Computing TechnologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina Computer Network Information Center Chinese Academy of SciencesBeijingChina Institute of Automation Chinese Academy of SciencesBeijingChina Beijing Key Laboratory of Mobile Computing and Pervasive Device Institute of Computing TechnologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina Computer Network Information Center Chinese Academy of SciencesBeijingChina State Key Laboratory of Stem Cell and Reproductive Biology Institute of ZoologyChinese Academy of SciencesBeijingChina University of Chinese Academy of Sciences BeijingChina University of Chinese Academy of Sciences BeijingChina CEMS NCMISHCMSMDISRCSDSAcademy of Mathematics and Systems ScienceChinese Academy of SciencesBeijingChina State Key Laboratory of Stem Cell and Reproductive Biology Institute of Zoology

Deciphering universal gene regulatory mechanisms in diverse organisms holds great potential for advancing our knowledge of fundamental life processes and facilitating clinical ***,the traditional research paradigm primarily focuses on individual model organisms and does not integrate various cell types across *** breakthroughs in single-cell sequencing and deep learning techniques present an unprecedented opportunity to address this *** this study,we built an extensive dataset of over 120 million human and mouse single-cell *** data preprocessing,we obtained 101,768,420 single-cell transcriptomes and developed a knowledge-informed cross-species foundation model,named *** pre-training,GeneCompass effectively integrated four types of prior biological knowledge to enhance our understanding of gene regulatory mechanisms in a self-supervised *** fine-tuning for multiple downstream tasks,GeneCompass outperformed state-of-the-art models in diverse applications for a single species and unlocked new realms of cross-species biological *** also employed GeneCompass to search for key factors associated with cell fate transition and showed that the predicted candidate genes could successfully induce the differentiation of human embryonic stem cells into the gonadal ***,GeneCompass demonstrates the advantages of using artificial intelligence technology to decipher universal gene regulatory mechanisms and shows tremendous potential for accelerating the discovery of critical cell fate regulators and candidate drug targets.

关键词： knowledge model with cross-species deciphering foundation genecompass informed mechanisms regulatory

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BECNN: Bias Field Estimation CNN Trained with a Dual Route Implicit Supervised Learning Strategy

BECNN: Bias Field Estimation CNN Trained with a Dual Route I...

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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Chen, Shuaizheng Feng, Chaolu Li, Wei Yang, Jinzhu Zhao, Dazhe Northeastern University School of Computer Science And Engineering Shenyang China Ministry of Education Northeastern University Key Laboratory of Intelligent Computing in Medical Image Shenyang China Northeastern University National Frontiers Science Center for Industrial Intelligence and Systems Optimization Shenyang China

ISBN: (纸本)9798350386226

Bias fields adversely affect various automatic analysis technologies. Therefore, bias field correction is essential. However, deep learning based methods encounter challenges in obtaining ground truth. Although existing methods attempt to address this problem by using training-free techniques or constructing datasets with approximations of the ground truth, the lack of task-oriented guidance, training instability, and inappropriate use of approximations still impact performance. Additionally, different approaches for bias field correction, i.e., estimating bias fields versus directly restoring clean images, exhibit different performances. However, there is no consensus on the best way, resulting in limited performance in some cases. To address these problems, we propose a bias field generation method to construct the dataset and provide task-oriented information. We then propose the concept of Equivalent of Residual Mapping (ERM) to analyze the advantages of estimating bias fields. According to ERM, we propose the Bias field Estimation Convolutional Neural Network (BECNN). Finally, we propose the Dual Route Implicit Supervised Learning (DRISL) strategy to balance the guidance derived from approximations of the ground truth with over-dependence on them. The proposed method is compared qualitatively and quantitatively with the correlated methods. Experiment results demonstrate that the proposed method performs effectively both on bias field estimation and correction. © 2024 IEEE.

关键词： Self-supervised learning

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Management of Scientific Agricultural Digital Ecosystems Based on Ecosystem Classification 16

Management of Scientific Agricultural Digital Ecosystems Bas...

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16th International Conference Management of Large-Scale System Development, MLSD 2023

作者： Kulba, Vladimir Medennikov, Viktor V.A. Trapeznikov Institute of Control Sciences of the Russian Academy of Sciences Laboratory of Modular Data Processing and Control Systems Moscow Russia Federal Research Center 'Computer Science and Control' of the Russian Academy of Sciences Information and Computing Systems Department Moscow Russia

ISBN: (纸本)9798350337907

The paper considers a mathematical model for managing a scientific digital ecosystem exemplified by the agriculture case;the model enables assessing the impact science exerts on the regions' socioeconomic position in order to build an adequate response to the advanced economies' regime of severe sanctions against Russia. For these purposes, a systemic analysis of the subject identification and classification of ecosystems was conducted to address the critical issue of determining the basic concepts and terms of the country's digitalization. © 2023 IEEE.

关键词： Agriculture

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Tumor type classification and candidate cancer-specific biomarkers discovery via semi-supervised learning

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Biophysics Reports 2023年第2期9卷 57-66页

作者： Peng Chen Zhenlei Li Zhaolin Hong Haoran Zheng Rong Zeng School of Computer Science and Technology University of Science and Technology of China Anhui Key Laboratory of Software Engineering in Computing and Communication University of Science and Technology of China Department of Systems Biology University of Science and Technology of China CAS Key Laboratory of Systems Biology Shanghai Institute of Biochemistry and Cell Biology Center for Excellence in Molecular Cell Science Chinese Academy of Sciences School of Life Science and Technology ShanghaiTech University

Identifying cancer-related differentially expressed genes provides significant information for diagnosing tumors, predicting prognoses, and effective treatments. Recently, deep learning methods have been used to perform gene differential expression analysis using microarray-based high-throughput gene profiling and have achieved good results. In this study, we proposed a new robust multiple-datasetsbased semi-supervised learning model, MSSL, to perform tumor type classification and candidate cancer-specific biomarkers discovery across multiple tumor types and multiple datasets, which addressed the following long-lasting obstacles:(1) the data volume of the existing single dataset is not enough to fully exert the advantages of deep learning;(2) a large number of datasets from different research institutions cannot be effectively used due to inconsistent internal variances and low quality;(3) relatively uncommon cancers have limited effects on deep learning methods. In our article, we applied MSSL to The Cancer Genome Atlas(TCGA) and the Gene Expression Comprehensive Database(GEO) pan-cancer normalized-level3 RNA-seq data and got 97.6% final classification accuracy, which had a significant performance leap compared with previous approaches. Finally, we got the ranking of the importance of the corresponding genes for each cancer type based on classification results and validated that the top genes selected in this way were biologically meaningful for corresponding tumors and some of them had been used as biomarkers, which showed the efficacy of our method.

关键词： Tumor type classification Cancer-specific biomarkers MSSL Deep learning

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Reversible Data Hiding With Secret Encrypted Image Sharing and Adaptive Coding

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IEEE Internet of Things Journal 2025年第13期12卷 23933-23945页

作者： Fang, Guangtian Wang, Feng Zhao, Chenbin Qin, Chuan Chang, Ching-Chun Chang, Chin-Chen Fujian University of Technology College of Computer Science and Mathematics Fuzhou350118 China Fujian University of Technology College of Computer Science and Mathematics Key Laboratory of Big Data Mining and Applications Fuzhou350118 China Monash University Faculty of IT Department of Software Systems and Cybersecurity VIC3800 Australia Ministry of Education School of Cyber Science and Engineering Key Laboratory of Aerospace Information Security and Trusted Computing Wuhan430072 China University of Shanghai for Science and Technology School of Optical-Electrical and Computer Engineering Shanghai200093 China Feng Chia University Information and Communication Security Research Center Taichuang 40724 Taiwan Feng Chia University Department of Information Engineering and Computer Science Taichung40724 Taiwan

To ensure the security of image information and facilitate efficient management in the cloud, the utilization of reversible data hiding in encrypted images (RDHEI) has emerged as pivotal. However, most existing RDHEI schemes suffer from lower security and limited embedding capacity. To tackle these challenges, we propose a reversible data hiding with secret encrypted image sharing and adaptive coding scheme. Specifically, in the encryption phase, we introduce an improved secret sharing (SS) encryption method based on the chinese remainder theorem for polynomials (CRTP). This method not only improves the security of encrypted images but also vacates a larger room for embedding. In the embedding phase, we introduce an adaptive coding embedding approach using XOR preservation (XORP) and huffman coding, which provides high embedding capacity. Experimental results and security analysis demonstrate that our proposed encryption method achieves optimal values in security indicators for encrypted images, such as information entropy, histograms, NPCR and UACI. The proposed embedding method is superior to some state-of-the-art schemes in terms of embedding capacity. Furthermore, in datasets BOSSBase and BOWS2, the average embedding rates of the proposed embedding approach can reach 2.1745 bpp and 2.0656 bpp, respectively. © 2025 IEEE.

关键词： Cryptography Encryption Security Data mining Adaptive coding Correlation Cloud computing Polynomials Image coding Streaming media

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Medical image registration and its application in retinal images:a review

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Visual computing for Industry,Biomedicine,and Art 2024年第1期7卷 142-164页

作者： Qiushi Nie Xiaoqing Zhang Yan Hu Mingdao Gong Jiang Liu Research Institute of Trustworthy Autonomous Systems and Department of Computer Science and Engineering Southern University of Science and TechnologyShenzhen 518055China Center for High Performance Computing and Shenzhen Key Laboratory of Intelligent Bioinformatics Shenzhen Institute of Advanced TechnologyChinese Academy of SciencesShenzhen 518055China Singapore Eye Research Institute Singapore 169856Singapore State Key Laboratory of Ophthalmology Optometry and Visual ScienceEye HospitalWenzhou Medical UniversityWenzhou 325027China

Medical image registration is vital for disease diagnosis and treatment with its ability to merge diverse informa-tion of images,which may be captured under different times,angles,or *** several surveys have reviewed the development of medical image registration,they have not systematically summarized the existing med-ical image registration *** this end,a comprehensive review of these methods is provided from traditional and deep-learning-based perspectives,aiming to help audiences quickly understand the development of medical image *** particular,we review recent advances in retinal image registration,which has not attracted much *** addition,current challenges in retinal image registration are discussed and insights and prospects for future research provided.

关键词： computer-aided diagnosis Medical image registration Deep learning Generative model Transformer Retina

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OUTLIER SYNTHESIS VIA HAMILTONIAN MONTE CARLO FOR OUT-OF-DISTRIBUTION DETECTION

arXiv

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arXiv 2025年

作者： Li, Hengzhuang Zhang, Teng National Engineering Research Center for Big Data Technology and System Service Computing Technology and Systems Laboratory Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China

Out-of-distribution (OOD) detection is crucial for developing trustworthy and reliable machine learning systems. Recent advances in training with auxiliary OOD data demonstrate efficacy in enhancing detection capabilities. Nonetheless, these methods heavily rely on acquiring a large pool of high-quality natural outliers. Some prior methods try to alleviate this problem by synthesizing virtual outliers but suffer from either poor quality or high cost due to the monotonous sampling strategy and the heavy-parameterized generative models. In this paper, we overcome all these problems by proposing the Hamiltonian Monte Carlo Outlier Synthesis (HamOS) framework, which views the synthesis process as sampling from Markov chains. Based solely on the in-distribution data, the Markov chains can extensively traverse the feature space and generate diverse and representative outliers, hence exposing the model to miscellaneous potential OOD scenarios. The Hamiltonian Monte Carlo with sampling acceptance rate almost close to 1 also makes our framework enjoy great efficiency. By empirically competing with SOTA baselines on both standard and large-scale benchmarks, we verify the efficacy and efficiency of our proposed HamOS. Our code is available at: https://***/Fir-lat/HamOS_OOD. © 2025, CC BY.

关键词： Markov chains

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Progress in research on ultrasound radiomics for predicting the prognosis of breast cancer

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Cancer Innovation 2023年第4期2卷 283-289页

作者： Xuantong Gong Xuefeng Liu Xiaozheng Xie Yong Wang Department of Ultrasound National Cancer Center/National Clinical Research Center for Cancer/Cancer HospitalChinese Academy of Medical Sciences and Peking Union Medical CollegeBijingChina State Key Laboratory of Virtual Reality Technology and Systems School of Computer Science and EngineeringBejjing Advanced Innovation Center for Big Data and Brain Computing(BDBC)Beihang UniversityBeijingChina School of Computer and Communication Engi neering.University of Science and Technology Beijing BeijingChina

Breast cancer is the most common malignant tumor and the leading cause of cancer-related deaths in women *** means of predicting the prognosis of breast cancer are very helpful in guiding treatment and improving patients'*** extracted by radiomics reflect the genetic and molecular characteristics of a tumor and are related to its biological behavior and the patient's ***,radiomics provides a new approach to noninvasive assessment of breast cancer *** is one of the commonest clinical means of examining breast *** recent years,some results of research into ultrasound radiomics for diagnosing breast cancer,predicting lymph node status,treatment response,recurrence and survival times,and other aspects,have been *** this article,we review the current research status and technical challenges of ultrasound radiomics for predicting breast cancer *** aim to provide a reference for radiomics researchers,promote the development of ultrasound radiomics,and advance its clinical application.

关键词： breast cancer deeplearning prognosisprediction radiomics ultrasound

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