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arXiv 2022年

作者： Jiang, Junjie Huang, Zi-Gang Grebogi, Celso Lai, Ying-Cheng The Key Laboratory of Biomedical Information Engineering of Ministry of Education Institute of Health and Rehabilitation Science School of Life Science and Technology Research Center for Brain-inspired Intelligence Xi’an Jiaotong University The Key Laboratory of Neuro-informatics & Rehabilitation Engineering of Ministry of Civil Affairs Shaanxi Xi’an China School of Electrical Computer and Energy Engineering Arizona State University TempeAZ85287 United States Institute for Complex Systems and Mathematical Biology School of Natural and Computing Sciences King’s College University of Aberdeen AB24 3UE United Kingdom Department of Physics Arizona State University TempeAZ85287 United States

We develop a deep convolutional neural network (DCNN) based framework for model-free prediction of the occurrence of extreme events both in time ("when") and in space ("where") in nonlinear physical systems of spatial dimension two. The measurements or data are a set of two-dimensional snapshots or images. For a desired time horizon of prediction, a proper labeling scheme can be designated to enable successful training of the DCNN and subsequent prediction of extreme events in time. Given that an extreme event has been predicted to occur within the time horizon, a space-based labeling scheme can be applied to predict, within certain resolution, the location at which the event will occur. We use synthetic data from the 2D complex Ginzburg-Landau equation and empirical wind speed data of the North Atlantic ocean to demonstrate and validate our machine-learning based prediction framework. The trade-offs among the prediction horizon, spatial resolution, and accuracy are illustrated, and the detrimental effect of spatially biased occurrence of extreme event on prediction accuracy is discussed. The deep learning framework is viable for predicting extreme events in the real world. © 2022, CC BY.

关键词： Forecasting

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Perspectives for self-driving labs in synthetic biology

arXiv

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arXiv 2022年

作者： Martin, Hector Garcia Radivojevic, Tijana Zucker, Jeremy Bouchard, Kristofer Sustarich, Jess Peisert, Sean Arnold, Dan Hillson, Nathan Babnigg, Gyorgy Marti, Jose Manuel Mungall, Christopher J. Beckham, Gregg T. Waldburger, Lucas Carothers, James Sundaram, ShivShankar Agarwal, Deb Simmons, Blake A. Backman, Tyler Banerjee, Deepanwita Tanjore, Deepti Ramakrishnan, Lavanya Singh, Anup Lawrence Berkeley National Laboratory Biological Systems and Engineering Division BerkeleyCA United States Department of Energy Agile BioFoundry EmeryvilleCA United States Joint BioEnergy Institute EmeryvilleCA United States BCAM Basque Center for Applied Mathematics Bilbao Spain Lawrence Berkeley National Laboratory Scientific Data Division BerkeleyCA United States Helen Wills Neuroscience Institute Redwood Center for Theoretical Neuroscience BerkeleyCA United States Lawrence Berkeley National Laboratory Energy Storage and Distributed Resources Division BerkeleyCA United States University of California Davis Department of Computer Science DavisCA United States Global Security Computing Applications Division Lawrence Livermore National Laboratory LivermoreCA United States Engineering Directorate Lawrence Livermore National Laboratory LivermoreCA United States Center for Bioengineering Lawrence Livermore National Laboratory LivermoreCA United States Department of Chemical Engineering Molecular Engineering & Sciences Institute Center for Synthetic Biology University of Washington SeattleWA United States Biosciences Division Argonne National Laboratory ArgonneIL United States Advanced Biofuels and Bioproducts Process Development Unit Lawrence Berkeley National Laboratory BerkeleyCA United States Biomaterials and Biomanufacturing Division Sandia National Laboratories LivermoreCA United States Earth and Biological Sciences Division Pacific Northwest National Laboratories RichlandWA United States Resources and Enabling Sciences Center National Renewable Energy Laboratory GoldenCO80401 United States Department of Bioengineering University of California BerkeleyCA United States

Self-driving labs (SDLs) combine fully automated experiments with artificial intelligence (AI) that decides the next set of experiments. Taken to their ultimate expression, SDLs could usher a new paradigm of scientific research, where the world is probed, interpreted, and explained by machines for human benefit. While there are functioning SDLs in the fields of chemistry and materials science, we contend that synthetic biology provides a unique opportunity since the genome provides a single target for affecting the incredibly wide repertoire of biological cell behavior. However, the level of investment required for the creation of biological SDLs is only warranted if directed towards solving difficult and enabling biological questions. Here, we discuss challenges and opportunities in creating SDLs for synthetic biology. © 2022, CC BY.

关键词： Synthetic biology

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Towards 6G wireless communication networks:vision, enabling technologies, and new paradigm shifts

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Science China(Information Sciences) 2021年第1期64卷 5-78页

作者： Xiaohu YOU Cheng-Xiang WANG Jie HUANG Xiqi GAO Zaichen ZHANG Mao WANG Yongming HUANG Chuan ZHANG Yanxiang JIANG Jiaheng WANG Min ZHU Bin SHENG Dongming WANG Zhiwen PAN Pengcheng ZHU Yang YANG Zening LIU Ping ZHANG Xiaofeng TAO Shaoqian LI Zhi CHEN Xinying MA Chih-Lin I Shuangfeng HAN Ke LI Chengkang PAN Zhimin ZHENG Lajos HANZO Xuemin (Sherman) SHEN Yingjie Jay GUO Zhiguo DING Harald HAAS Wen TONG Peiying ZHU Ganghua YANG Jun WANG Erik G.LARSSON Hien Quoc NGO Wei HONG Haiming WANG Debin HOU Jixin CHEN Zhe CHEN Zhangcheng HAO Geoffrey Ye LI Rahim TAFAZOLLI Yue GAO H.Vincent POOR Gerhard P.FETTWEIS Ying-Chang LIANG National Mobile Communications Research Laboratory School of Information Science and EngineeringSoutheast University Purple Mountain Laboratories Shanghai Institute of Fog Computing Technology (SHIFT) ShanghaiTech University Research Center for Network Communication Peng Cheng Laboratory State Key Laboratory of Networking and Switching Technology Beijing University of Posts and Telecommunications National Engineering Laboratory for Mobile Network Technologies Beijing University of Posts and Telecommunications National Key Laboratory of Science and Technology on Communications University of Electronic Science and Technology of China (UESTC) China Mobile Research Institute School of Electronics and Computer Science University of Southampton Department of Electrical and Computer Engineering University of Waterloo Global Big Data Technologies Centre (GBDTC) University of Technology Sydney School of Electrical and Electronic Engineering The University of Manchester LiFi Research and Development Centre Institute for Digital CommunicationsSchool of EngineeringThe University of Edinburgh Huawei Technologies Canada Co. Ltd. Huawei Technologies Department of Electrical Engineering (ISY) Link?ping University Institute of Electronics Communications & Information Technology (ECIT)Queen's University Belfast State Key Laboratory of Millimeter Waves School of Information Science and EngineeringSoutheast University School of Electrical and Computer Engineering Georgia Institute of Technology 5G Innovation Centre University of Surrey Princeton University Vodafone Chair Mobile Communications Systems Technische Universit?t Dresden Center for Intelligent Networking and Communications (CINC) University of Electronic Science and Technology of China (UESTC)

The fifth generation(5G) wireless communication networks are being deployed worldwide from 2020 and more capabilities are in the process of being standardized, such as mass connectivity, ultra-reliability,and guaranteed low latency. However, 5G will not meet all requirements of the future in 2030 and beyond, and sixth generation(6G) wireless communication networks are expected to provide global coverage, enhanced spectral/energy/cost efficiency, better intelligence level and security, etc. To meet these requirements, 6G networks will rely on new enabling technologies, i.e., air interface and transmission technologies and novel network architecture, such as waveform design, multiple access, channel coding schemes, multi-antenna technologies, network slicing, cell-free architecture, and cloud/fog/edge computing. Our vision on 6G is that it will have four new paradigm shifts. First, to satisfy the requirement of global coverage, 6G will not be limited to terrestrial communication networks, which will need to be complemented with non-terrestrial networks such as satellite and unmanned aerial vehicle(UAV) communication networks, thus achieving a space-airground-sea integrated communication network. Second, all spectra will be fully explored to further increase data rates and connection density, including the sub-6GHz, millimeter wave(mmWave), terahertz(THz),and optical frequency bands. Third, facing the big datasets generated by the use of extremely heterogeneous networks, diverse communication scenarios, large numbers of antennas, wide bandwidths, and new service requirements, 6G networks will enable a new range of smart applications with the aid of artificial intelligence(AI) and big data technologies. Fourth, network security will have to be strengthened when developing 6G networks. This article provides a comprehensive survey of recent advances and future trends in these four aspects. Clearly, 6G with additional technical requirements beyond those of 5G will enable f

关键词： 6G vision network architecture air interface and transmission technologies space-air-ground-sea integrated network all spectra artificial intelligence network security

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SYNAPSE: An international roadmap to large brain imaging

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Physics Reports 2023年 999卷 1-60页

作者： Stampfl, Anton P.J. Liu, Zhongdong Hu, Jun Sawada, Kei Takano, H. Kohmura, Yoshiki Ishikawa, Tetsuya Lim, Jae-Hong Je, Jung-Ho Low, Chian-Ming Teo, Alvin Tok, Eng Soon Tan, Tin Wee Ban, Kenneth Libedinsky, Camilo Tan, Francis Chee Kuan Chen, Kuan-Peng Yang, An-Cheng Chuang, Chao-Chun Chen, Nan-Yow Shih, Chi-Tin Lee, Ting-Kuo Yang, De-Nian Lai, Hsu-Chao Shuai, Hong-Han Cheng, Chang-Chieh Ching, Yu-Tai Li, Chia-Wei Charng, Ching-Che Lo, Chung-Chuan Chiang, Ann-Shyn Recur, Benoit Petibois, Cyril Cheng, Chia-Liang Chen, Hsiang-Hsin Yang, Shun-Min Hwu, Yeukuang Rojviriya, Catleya Rugmai, Supagorn Rujirawat, Saroj Margaritondo, Giorgio Australian Nuclear Science and Technology Organization Lucas Heights 2234 NSW Australia Henan university of Technology Zhengzhou China Shanghai Institute of Applied Physics Chinese Academy of Science Shanghai China RIKEN SPring-8 Center Hyogo 679-5148 Japan Pohang Accelerator Laboratory Pohang University of Science and Technology Pohang Gyeongbuk 37673 South Korea Department of Materials Science and Engineering Pohang University of Science and Technology Gyeongbuk Pohang 37673 South Korea Department of Pharmacology Department of Anaesthesia and Healthy Longevity Research Programme Yong Loo Lin School of Medicine National University of Singapore Singapore School of Chemical and Life Sciences Nanyang Polytechnic Singapore eMaGIC-Lab Department of Physics National University of Singapore Singapore National Supercomputing Center Singapore Department of Psychology The N1 Institute for Health National University of Singapore Singapore Institute of Molecular and Cell Biology A*STAR Singapore Department of Anaesthesia National University Hospital National University Health System Singapore National Center for High-Performance Computing Hsinchu Taiwan Department of Physics Tunghai University Taichung Taiwan Department of Physics National Tsing Hua University Hsinchu Taiwan Institute of Information Science Academia Sinica Taipei Taiwan Department of Computer Science National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Electronics and Electrical Engineering National Yang Ming Chiao Tung University Hsinchu Taiwan Information Technology Service Center National Yang Ming Chiao Tung University Hsinchu Taiwan National Yang Ming Chiao Tung University Hsinchu Taiwan Department of Life Science National Tsing Hua University Hsinchu Taiwan Institute of Systems Neuroscience and Brain Research Center National Tsing Hua University Hsinchu Taiwan Institute of Physics Academia Sinica Taipei Taiwan Department of Physics National Dong Hwa University

Since 2020, synchrotron radiation facilities in several Asia-Pacific countries have been collaborating in a major project called “SYNAPSE” (Synchrotrons for Neuroscience: an Asia-Pacific Scientific Enterprise). They use x-ray imaging to attack in a coordinated fashion one of the major issues in modern science: the structure of animal and human brains, including neurons and connections. The objective is to develop Google-like maps also including detailed structural and functional information for selected regions of interest. The sheer mass of data needed for the objective poses huge problems for the acquisition, processing, storage and use of images. In order to complete the task within a reasonable time, the key element of the SYNAPSE strategy is the parallel and coordinated work of several facilities on the same specimens. This article reviews different aspects of the enterprise, including the foundations of synchrotron radiation, coherence and of its role in advanced imaging, electron accelerators, x-ray optics and detectors. This will provide the foundation for an extensive presentation of the different components of SYNAPSE, with an overview of results already obtained within the consortium. © 2022

关键词： Brain mapping Phase contrast Radiology Supercomputing Synchrotron X-rays

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Measuring success for a future vision: Defining impact in science gateways/virtual research environments

Measuring success for a future vision: Defining impact in sc...

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作者： Calyam, Prasad Wilkins-Diehr, Nancy Miller, Mark Brookes, Emre H. Arora, Ritu Chourasia, Amit Jennewein, Douglas M. Nandigam, Viswanath Drew LaMar, M. Cleveland, Sean B. Newman, Greg Wang, Shaowen Zaslavsky, Ilya Cianfrocco, Michael A. Ellett, Kevin Tarboton, David Jeffery, Keith G. Zhao, Zhiming González-Aranda, Juan Perri, Mark J. Tucker, Greg Candela, Leonardo Kiss, Tamas Gesing, Sandra Department of Electrical Engineering and Computer Science University of Missouri ColumbiaMO United States San Diego Supercomputer Center University of California San DiegoCA United States Department of Biochemistry University of Texas Health Science Center HoustonTX United States Texas Advanced Computing Center University of Texas at Austin AustinTX United States Information Technology Services University of South Dakota VermillionSD United States Biology Department College of William and Mary WilliamsburgVA United States Information Technology Services–Cyberinfrastructure University of Hawaii HonoluluHI United States Natural Resource Ecology Laboratory Colorado State University Fort CollinsCO United States Department of Geography and Geographic Information Science University of Illinois UrbanaIL United States Department of Biological Chemistry and Life Sciences Institute University of Michigan Ann ArborMI United States Pervasive Technology Institute Indiana University BloomingtonIN United States Civil and Environmental Engineering Utah State University LoganUT United States Keith G. Jeffery Consultants Faringdon United Kingdom Multiscale Networked Systems Group University of Amsterdam Amsterdam Netherlands Chief Technology Office LifeWatch ERIC Seville Spain Chemistry Department Sonoma State University Rohnert ParkCA United States Department of Geological Sciences CIRES University of Colorado Boulder BoulderCO United States National Research Council of Italy Pisa Italy Research Center for Parallel Computing University of Westminster London United Kingdom Center for Research Computing University of Notre Dame Notre DameIN United States

Scholars worldwide leverage science gateways/virtual research environments (VREs) for a wide variety of research and education endeavors spanning diverse scientific fields. Evaluating the value of a given science gateway/VRE to its constituent community is critical in obtaining the financial and human resources necessary to sustain operations and increase adoption in the user community. In this article, we feature a variety of exemplar science gateways/VREs and detail how they define impact in terms of, for example, their purpose, operation principles, and size of user base. Further, the exemplars recognize that their science gateways/VREs will continuously evolve with technological advancements and standards in cloud computing platforms, web service architectures, data management tools and cybersecurity. Correspondingly, we present a number of technology advances that could be incorporated in next-generation science gateways/VREs to enhance their scope and scale of their operations for greater success/impact. The exemplars are selected from owners of science gateways in the Science Gateways Community Institute (SGCI) clientele in the United States, and from the owners of VREs in the International Virtual Research Environment Interest Group (VRE-IG) of the Research Data Alliance. Thus, community-driven best practices and technology advances are compiled from diverse expert groups with an international perspective to envisage futuristic science gateway/VRE innovations. © 2020 John Wiley & Sons, Ltd.

关键词： Web services

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SECP-AKE: Secure and efficient certificateless-password-based authenticated key exchange protocol for smart healthcare systems

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Journal of systems Architecture 2025年 167卷

作者： Zhiqiang Zhao Xuexian Hu Yining Liu Jianghong Wei Yuanjun Xia Yangfan Liang State Key Laboratory of Mathematical Engineering and Advanced Computing Information Engineering University Zhengzhou 450000 Henan China School of Data Science and Artificial Intelligence Wenzhou University of Technology Wenzhou 325027 Zhejiang China School of Computer and Information Security Guilin University of Electronic Technology Guilin 541004 Guangxi China College of Information Science and Engineering the Provincial Key Laboratory of Multimodal Perceiving and Intelligent Systems the Key Laboratory of Medical Electronics and Digital Health of Zhejiang Province and the Engineering Research Center of Intelligent Human Health Situation Awareness of Zhejiang Province Jiaxing University Jiaxing 314001 Zhejiang China

Due to the importance and sensitivity of medical data, the security protection and privacy preservation of the Healthcare Internet of Things (IoT) are current research hotspots. However, existing research schemes still suffer from incomplete security properties, imperfect authentication mechanisms, and inadequate privacy preservation. Therefore, this paper presents SECP-AKE, a secure and efficient certificateless-password-based authenticated key exchange protocol for IoT-based smart healthcare, which enables batch authentication, resists physical attacks, and provides strong anonymity. Specifically, using certificateless cryptography, the SECP-AKE protocol enables batch authentication of authorized users and devices while also resolving the key escrow problem. In particular, the SECP-AKE protocol incorporates Physical Unclonable Functions (PUFs) to resist physical attacks, thus enhancing device security and ensuring reliable medical service delivery. Additionally, the design of a pseudonym update mechanism can achieve user unlinkability, thereby providing enhanced privacy preservation. The results from both formal verification using SVO logic and informal security analyses demonstrate that the SECP-AKE protocol is secure and offers more comprehensive security properties. Meanwhile, the use of a well-known automated security verification tool Scyther further evaluates the protocol’s security reliability. Ultimately, comparative experiments on communication overhead and computational overhead demonstrate that the SECP-AKE protocol is efficient and feasible compared to state-of-the-art existing works.

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Strategic priorities for transformative progress in advancing biology with proteomics and artificial intelligence

arXiv

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arXiv 2025年

作者： Sun, Yingying Jun, A. Liu, Zhiwei Sun, Rui Qian, Liujia Payne, Samuel H. Bittremieux, Wout Ralser, Markus Li, Chen Chen, Yi Dong, Zhen Perez-Riverol, Yasset Khan, Asif Sander, Chris Aebersold, Ruedi Vizcaíno, Juan Antonio Krieger, Jonathan R. Yao, Jianhua Wen, Han Zhang, Linfeng Zhu, Yunping Xuan, Yue Sun, Benjamin Boyang Qiao, Liang Hermjakob, Henning Tang, Haixu Gao, Huanhuan Deng, Yamin Zhong, Qing Chang, Cheng Bandeira, Nuno Li, Ming Weinan, E. Sun, Siqi Yang, Yuedong Omenn, Gilbert S. Zhang, Yue Xu, Ping Fu, Yan Liu, Xiaowen Overall, Christopher M. Wang, Yu Deutsch, Eric W. Chen, Luonan Cox, Jürgen Demichev, Vadim He, Fuchu Huang, Jiaxing Jin, Huilin Liu, Chao Li, Nan Luan, Zhongzhi Song, Jiangning Yu, Kaicheng Wan, Wanggen Wang, Tai Zhang, Kang Zhang, Le Bell, Peter A. Mann, Matthias Zhang, Bing Guo, Tiannan Affiliated Hangzhou First People’s Hospital State Key Laboratory of Medical Proteomics School of Medicine Westlake University Zhejiang Province Hangzhou China Westlake Center for Intelligent Proteomics Westlake Laboratory of Life Sciences and Biomedicine Zhejiang Province Hangzhou China Biology Department Brigham Young University ProvoUT84602 United States Department of Computer Science University of Antwerp Antwerp2020 Belgium Department of Biochemistry CharitéUniversitätsmedizin Berlin Berlin Germany Biomedicine Discovery Institute Department of Biochemistry and Molecular Biology Monash University MelbourneVICVIC 3800 Australia Wellcome Genome Campus Hinxton CambridgeCB10 1SD United Kingdom Harvard Medical School Ludwig Center at Harvard United States Harvard Medical School Broad Institute Ludwig Center at Harvard Dana-Farber Cancer Institute United States Department of Biology Institute of Molecular Systems Biology ETH Zürich Zürich Switzerland Bruker Ltd. MiltonONL9T 6P4 Canada AI for Life Sciences Lab Tencent Shenzhen518057 China State Key Laboratory of Medical Proteomics AI for Science Institute Beijing100080 China Beijing Institute of Lifeomics Beijing102206 China Thermo Fisher Scientific GmbH Hanna-Kunath Str. 11 Bremen28199 Germany Informatics and Predictive Sciences Research Bristol Myers Squibb United States Department of Chemistry Fudan University Songhu Road 2005 Shanghai200438 China Department of Computer Science Luddy School of Informatics Computing and Engineering Indiana University IN47408 United States ProCan® Children’s Medical Research Institute Faculty of Medicine and Health The University of Sydney WestmeadNSW Australia La Jolla CA United States Central China Institute of Artificial Intelligence University of Waterloo Canada AI for Science Institute Center for Machine Learning Research School of Mathematical Sciences Peking University China Research Institute of Intelligent Complex Systems Fudan U

Artificial intelligence (AI) is transforming scientific research, including proteomics. Advances in mass spectrometry (MS)-based proteomics data quality, diversity, and scale, combined with groundbreaking AI techniques, are unlocking new challenges and opportunities in biological discovery. Here, we highlight key areas where AI is driving innovation, from data analysis to new biological insights. These include developing an AI-friendly ecosystem for proteomics data generation, sharing, and analysis;improving peptide and protein identification and quantification;characterizing protein-protein interactions and protein complexes;advancing spatial and perturbation proteomics;integrating multi-omics data;and ultimately enabling AI-empowered virtual cells. © 2025, CC BY.

关键词： Biotic

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One pathogen does not an epidemic make: A review of interacting contagions, diseases, beliefs, and stories

arXiv

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arXiv 2025年

作者： Hébert-Dufresne, Laurent Ahn, Yong-Yeol Allard, Antoine Crothers, Jessica W. Dodds, Peter Sheridan Galesic, Mirta Ghanbarnejad, Fakhteh Gravel, Dominique Hammond, Ross A. Lerman, Kristina Lovato, Juniper Openshaw, John J. Redner, S. Scarpino, Samuel V. St-Onge, Guillaume Tangherlini, Timothy R. Young, Jean-Gabriel Vermont Complex Systems Institute University of Vermont BurlingtonVT United States Translational Global Infectious Disease Research Center University of Vermont BurlingtonVT United States Department of Computer Science University of Vermont BurlingtonVT United States Center for Complex Networks and Systems Research Luddy School of Informatics Computing and Engineering Indiana University BloomingtonIN United States Département de physique de génie physique et d’optique Université Laval QuébecQC Canada Department of Pathology and Laboratory Medicine Robert Larner M.D. College of Medicine University of Vermont BurlingtonVT United States Santa Fe Institute Santa FeNM United States Complexity Science Hub Vienna Austria School of Technology and Architecture SRH University of Applied Sciences Heidelberg Leipzig Germany Département de biologie Université de Sherbrooke SherbrookeQC Canada Brown School Washington University in St. Louis St. LouisMO United States The Brookings Institution WashingtonDC United States Information Sciences Institute University of Southern California United States Division of Infectious Diseases and Geographic Medicine Stanford University StanfordCA United States Institute for Experiential AI Northeastern University BostonMA United States Laboratory for the Modeling of Biological and Socio-technical Systems Northeastern University BostonMA United States The Roux Institute Northeastern University PortlandME United States Department of Scandinavian School of Information University of California Berkeley BerkeleyCA United States Department of Mathematics & Statistics University of Vermont BurlingtonVT United States

From pathogens and computer viruses to genes and memes, contagion models have found widespread utility across the natural and social sciences. Despite their success and breadth of adoption, the approach and structure of these models remain surprisingly siloed by field. Given the siloed nature of their development and widespread use, one persistent assumption is that a given contagion can be studied in isolation, independently from what else might be spreading in the population. In reality, countless contagions of biological and social nature interact within hosts (interacting with existing beliefs, or the immune system) and across hosts (interacting in the environment, or affecting transmission mechanisms). Additionally, from a modeling perspective, we know that relaxing these assumptions has profound effects on the physics and translational implications of the models. Here, we review mechanisms for interactions in social and biological contagions, as well as the models and frameworks developed to include these interactions in the study of the contagions. We highlight existing problems related to the inference of interactions and to the scalability of mathematical models and identify promising avenues of future inquiries. In doing so, we highlight the need for interdisciplinary efforts under a unified science of contagions and for removing a common dichotomy between social and biological contagions. Copyright © 2025, The Authors. All rights reserved.

关键词： Histology

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Mining Frequent Patterns for ECG Multi-label Data by FP-Growth Algorithm Based on Spark 7

Mining Frequent Patterns for ECG Multi-label Data by FP-Grow...

引用

7th International Conference on Information, Communication and Networks, ICICN 2019

作者： Wang, Di Ge, Jing Wu, Lu Song, Xiaofeng Shandong Computer Science Center National Supercomputer Center in Jinan Qilu University of Technology Shandong Academy of Sciences Key Laboratory of Medical Artificial Intelligence Jinan China Shanghai Key Laboratory of Scalable Computing and Systems Shanghai Jiao Tong University Shanghai China State Key Laboratory of High-end Server and Storage Technology Inspur Electronic Information Industry Co. Ltd Jinan China

ISBN: (纸本)9781728104263

Chinese Cardiovascular Disease Database (CCDD), which contains 12-Lead electrocardiogram (ECG) data and detailed features with diagnosis, include more than 270 categories of ECG-type data. Each record can correspond to multiple diagnosis results. However, most of the current methods are for single-label data, few people study multi-label ECG data, especially the correlation in ECG type labels. As one of the top ten classic algorithms for data mining, association rule mining algorithm can be used to discover interesting associations or related information between item sets in a large amount of data. The association rule mining algorithm on a single machine is difficult to adapt to big data analysis and processing tasks because of its space-time complexity and I/O cost. This paper makes full use of the powerful data processing capabilities of Spark's cluster system, studies the frequent patterns for ECG big data. © 2019 IEEE.

关键词： Electrocardiograms

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A large-scale transcriptional study reveals inhibition of COVID-19 related cytokine storm by traditional Chinese medicines

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Science Bulletin 2021年第9期66卷 884-888,M0003页

作者： Yifei Dai Weijie Qiang Yu Gui Xue Tan Tianli Pei Kequan Lin Siwei Cai Liang Sun Guochen Ning Jianxun Wang Hongyan Guo Yimin Sun Jing Cheng Lan Xie Xun Lan Dong Wang State Key Laboratory of Southwestern Chinese Medicine Resources School of Basic Medical SciencesChengdu University of Traditional Chinese MedicineChengdu 611137China Department of Basic Medical Sciences School of MedicineTsinghua UniversityBeijing 100084China Institute of Medicinal Plant Development Chinese Academy of Medical Sciences and Peking Union Medical CollegeBeijing 100193China School of Pharmacy Chengdu University of Traditional Chinese MedicineChengdu 611137China High Performance Computing Department National Supercomputing Center in ShenzhenShenzhen 518055China Department of Electronic and Computer Engineering College of EngineeringDrexel UniversityPhiladelphia 19104USA Dongli District Jinqiao Street Community Health Service Center Tianjin 300300China Department of Biomedical Engineering School of MedicineTsinghua UniversityBeijing 100084China School of Life Sciences Beijing University of Chinese MedicineBeijing 100029China National Engineering Research Center for Beijing Biochip Technology Beijing 102206China State Key Laboratory of Membrane Biology School of MedicineTsinghua UniversityBeijing 100084China Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases Hangzhou 310003China Medical Systems Biology Research Center School of MedicineTsinghua UniversityBeijing 100084China

The application of traditional Chinese medicine(TCM)has made great contributions to the fight against the epidemic of coronavirus disease-2019(COVID-19).Despite the remarkable therapeutic effects of TCM,the molecular mechanisms of TCM formulae inhibiting COVID-19 are still not fully ***,we cφm-bined the automated high throughput sequencing-based high throughput screening(HTS^(2))assay with bioinformatics and computer-aided drug design(CADD)to investigate the molecular mechanisms of TCM-mediated therapeutic effects on COVID-19-related cytokine storm(Fig.1a).

关键词：细胞因子风暴六君子汤理中汤诊疗方案黄连解毒汤中药提取物肺炎分子机制

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