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Multi-omics graph convolutional networks for digestive system tumour classification and early-late stage diagnosis

CAAI Transactions on Intelligence Technology 2024年第6期9卷 1572-1586页

作者： Lin Zhou Zhengzhi Zhu Hongbo Gao Chunyu Wang Muhammad Attique Khan Mati Ullah Siffat Ullah Khan School of Information Science and Technology University of Science and Technology of ChinaHefeiAnhuiChina Anhui Engineering Research Center on Information Fusion and Control of Intelligent Robot WuhuAnhuiChina Department of Breast Center West District of The Affiliated Hospital of University of Science and Technology of ChinaDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaHefeiAnhuiChina Institute of Advanced Technology University of Science and Technology of ChinaHefeiAnhuiChina School of Electrical and Electronic Engineering Nanyang Technological UniversitySingaporeSingapore School of Biological and Environmental Engineering Chaohu UniversityChaohu Regional Collaborative Technology Service Center for Rural RevitalizationHefeiChina Department of Artificial Intelligence College of Computer Engineering and SciencePrince Mohammad Bin Fahd UniversityAl-KhobarSaudi Arabia School of Automation Northwestern Polytechnical UniversityXi'anShaanxiChina Institute of Engineering and Computing Science University of Science and Technology of BannuKPKBannuPakistan

The prevalence of digestive system tumours(DST)poses a significant challenge in the global crusade against *** neoplasms constitute 20%of all documented cancer diagnoses and contribute to 22.5%of cancer-related *** accurate diagnosis of DST is paramount for vigilant patient monitoring and the judicious selection of optimal *** this challenge,the authors introduce a novel methodology,denominated as the Multi-omics Graph Transformer Convolutional Network(MGTCN).This innovative approach aims to discern various DST tumour types and proficiently discern between early-late stage tumours,ensuring a high degree of *** MGTCN model incorporates the Graph Transformer Layer framework to meticulously transform the multi-omics adjacency matrix,thereby illuminating potential associations among diverse samples.A rigorous experimental evaluation was undertaken on the DST dataset from The Cancer Genome Atlas to scrutinise the efficacy of the MGTCN *** outcomes unequivocally underscore the efficiency and precision of MGTCN in diagnosing diverse DST tumour types and successfully discriminating between early-late stage DST *** source code for this groundbreaking study is readily accessible for download at https://***/bigone1/MGTCN.

关键词： digestive system tumors early-late stage multi-omics tumor types

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Hinge-Wasserstein: Estimating Multimodal Aleatoric Uncertainty in Regression Tasks

Hinge-Wasserstein: Estimating Multimodal Aleatoric Uncertain...

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IEEE computer Society Conference on computer Vision and Pattern Recognition Workshops (CVPRW)

作者： Ziliang Xiong Arvi Jonnarth Abdelrahman Eldesokey Joakim Johnander Bastian Wandt Per-Erik Forssén Department of Electrical Engineering Computer Vision Laboratory LiU Sweden Husqvarna Group Huskvarna Sweden Visual Computing Center KAUST Saudi Arabia Zenseact Sweden

ISBN: (数字)9798350365474

ISBN: (纸本)9798350365481

computer vision systems that are deployed in safety-critical applications need to quantify their output uncertainty. We study regression from images to parameter values and here it is common to detect uncertainty by predicting probability distributions. In this context, we investigate the regression-by-classification paradigm which can represent multimodal distributions, without a prior assumption on the number of modes. Through experiments on a specifically designed synthetic dataset, we demonstrate that traditional loss functions lead to poor probability distribution estimates and severe overconfidence, in the absence of full ground truth distributions. In order to alleviate these issues, we propose hinge-Wasserstein – a simple improvement of the Wasserstein loss that reduces the penalty for weak secondary modes during training. This enables prediction of complex distributions with multiple modes, and allows training on datasets where full ground truth distributions are not available. In extensive experiments, we show that the proposed loss leads to substantially better uncertainty estimation on two challenging computer vision tasks: horizon line detection and stereo disparity estimation.

关键词： Training computer vision Uncertainty Conferences Estimation Probability distribution Pattern recognition

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Federated Meta Continual Learning for Efficient and Autonomous Edge Inference 24th

Federated Meta Continual Learning for Efficient and Autono...

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24th International Conference on Algorithms and Architectures for Parallel Processing, ICA3PP 2024

作者： Li, Bingze Ho, Stella Qu, Youyang Xu, Chenhao Luan, Tom H. Gao, Longxiang Jinan China Shandong Provincial Key Laboratory of Computing Power Internet and Service Computing Shandong Fundamental Research Center for Computer Science Jinan China Department of Biomedical Engineering The University of Melbourne VIC Melbourne Australia School of Information Technology Deakin University VIC Geelong Australia School of Cyber Engineering Xidian University Xi’an China

ISBN: (纸本)9789819615476

With an increasing volume of data being collected and processed on edge, Federated Learning (FL) has become a dominant approach to train shared global models on distributed data held by diverse edge clients without exposing privacy. However, with expectations of high-quality user experience, instantaneous intelligent decisions must be made at the network edge to meet performance, security, and latency requirements. Intuitively, this challenge becomes more daunting as edge devices are constrained by limited computing and storage resources. Furthermore, edge clients need to continuously acquire, update, accumulate, and apply knowledge in domains requiring the processing of sensitive data and long-term model training. It has been proven that edge clients often forget previous tasks knowledge after learning new tasks, resulting in catastrophic forgetting. To mitigate this, we propose a Federated Meta Continual Learning (FMCL) approach. It requires edge clients not only to learn new tasks quickly but also to memorize rapidly. Specifically, we adopted a MAML (Model-Agnostic Meta-Learning) framework with memory replay, setting up buffers at edge clients to consolidate old tasks. In such a way, the model learns optimal initialization to quickly adapt to all seen tasks while preventing catastrophic forgetting. Extensive evaluation results indicate that FMCL performs well in alleviating catastrophic forgetting and achieves a good balance between learning new tasks and remembering existing tasks. © The Author(s), under exclusive license to Springer Nature Singapore Pte Ltd. 2025.

关键词： Federated learning

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Image-To-Mesh Conversion for Biomedical Simulations

arXiv

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arXiv 2024年

作者： Drakopoulos, Fotis Garner, Kevin Rector, Christopher Chrisochoides, Nikos Center for Real-Time Computing Department of Computer Science Old Dominion University NorfolkVA United States

Converting a three-dimensional medical image into a 3D mesh that satisfies both the quality and fidelity constraints of predictive simulations and image-guided surgical procedures remains a critical problem. Presented is an image-to-mesh conversion method called CBC3D. It first discretizes a segmented image by generating an adaptive Body-centered Cubic (BCC) mesh of high-quality elements. Next, the tetrahedral mesh is converted into a mixed-element mesh of tetrahedra, pentahedra, and hexahedra to decrease element count while maintaining quality. Finally, the mesh surfaces are deformed to their corresponding physical image boundaries, improving the mesh's fidelity. The deformation scheme builds upon the ITK open-source library and is based on the concept of energy minimization, relying on a multi-material point-based registration. It uses non-connectivity patterns to implicitly control the number of extracted feature points needed for the registration and, thus, adjusts the trade-off between the achieved mesh fidelity and the deformation speed. We compare CBC3D with four widely used and state-of-the-art homegrown image-to-mesh conversion methods from industry and academia. Results indicate that the CBC3D meshes (i) achieve high fidelity, (ii) keep the element count reasonably low, and (iii) exhibit good element quality. © 2024, CC BY.

关键词： Mesh generation

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MOEA/D With Spatial–Temporal Topological Tensor Prediction for Evolutionary Dynamic Multiobjective Optimization

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IEEE Transactions on Evolutionary Computation 2025年第3期29卷 764-778页

作者： Wang, Xianpeng Zhao, Yumeng Tang, Lixin Yao, Xin Northeastern University National Frontiers Science Center for Industrial Intelligence and Systems Optimization Key Laboratory of Data Analytics and Optimization for Smart Industry Ministry of Education Shenyang110819 China Northeastern University Liaoning Engineering Laboratory of Data Analytics and Optimization for Smart Industry Liaoning Key Laboratory of Manufacturing System and Logistics Optimization Shenyang110819 China Northeastern University National Frontiers Science Center for Industrial Intelligence and Systems Optimization Shenyang110819 China Lingnan University Department of Computing and Decision Sciences Hong Kong University of Birmingham School of Computer Science Birmingham United Kingdom

When solving dynamic multiobjective optimization problems, most evolutionary algorithms (EAs) attempt to predict the initial population in a new environment by mining the relationships between solutions during historical environment changes. However, the complex relationships between solutions and the limited amount of available data often make it difficult to extract useful information efficiently, which may deteriorate the prediction accuracy. To address this problem, this article proposes a spatial–temporal topological tensor-based prediction method to generate the initial population in a new environment under the decomposition framework of MOEA/D. The method relies on the idea that the population distribution in each environment has topological similarity along the time dimension in the objective space, which makes it efficient to represent the population distribution in terms of a tensor and predict new solutions along each decomposition axis in a new environment by an improved tensor-based multishort time series prediction method. Experimental results on various benchmark problems and a real-world problem show that the proposed method is competitive or even superior to state-of-the-art dynamic multiobjective EAs based on prediction strategies. 1997-2012 IEEE.

关键词： Tensors

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StencilStream: A SYCL-based Stencil Simulation Framework Targeting FPGAs

StencilStream: A SYCL-based Stencil Simulation Framework Tar...

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International Conference on Field Programmable Logic and Applications

作者： Jan-Oliver Opdenhövel Christoph Alt Christian Plessl Tobias Kenter Department of Computer Science Paderborn Center for Parallel Computing Paderborn University Friedrich Alexander Universität Erlangen

ISBN: (数字)9798331530075

ISBN: (纸本)9798331530082

Although High-Level Synthesis has dramatically improved the usability of FPGAs in High-Performance computing applications, it still requires much experience to create well-performing FPGA designs. We introduce the stencil simulation framework StencilStream to separate the concerns of performance engineers and domain scientists. We have formulated our performance-oriented stencil simulation designs for FPGAs along with their management code as C++ templates using SYCL language features. Application developers instantiate these templates with their concrete stencil code and obtain a complete application with little management overhead. In this work, we describe the most interesting API features and the two backend architectures of StencilStream, along with their corresponding performance models. We then evaluate the performance of the architectures using three manually implemented sample applications and highlight the real-world usability of StencilStream further with shallow water simulations obtained from a code-generation flow. Compiled with Intel oneAPI for an Intel Stratix 10 GX 2800 target FPGA, the best-performing sample design exceeds a throughput of 1 TFLOPS.

关键词： Productivity Codes High performance computing Graphics processing units computer architecture Throughput Logic Usability Field programmable gate arrays Engines

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CT2C-QA: Multimodal Question Answering over Chinese Text, Table and Chart 24

CT2C-QA: Multimodal Question Answering over Chinese Text, Ta...

引用

32nd ACM International Conference on Multimedia, MM 2024

作者： Zhao, Bowen Cheng, Tianhao Zhang, Yuejie Cheng, Ying Feng, Rui Zhang, Xiaobo Fudan University Shanghai China Children's Hospital of Fudan University Shanghai China School of Computer Science Shanghai Key Laboratory of Intelligent Information Processing Fudan University China Shanghai Collaborative Innovation Center of Intelligent Visual Computing. China Fudan Zhangjiang Institute Shanghai China Children's Hospital of Fudan University National Children's Medical Center Shanghai China

ISBN: (纸本)9798400706868

Multimodal Question Answering (MMQA) is crucial as it enables comprehensive understanding and accurate responses by integrating insights from diverse data representations such as tables, charts, and text. Most existing researches in MMQA only focus on two modalities such as image-text QA, table-text QA and chart-text QA, and there remains a notable scarcity in studies that investigate the joint analysis of text, tables, and charts. In this paper, we present CT2C-QA, a pioneering Chinese reasoning-based QA dataset that includes an extensive collection of text, tables, and charts, meticulously compiled from 200 selectively sourced webpages. Our dataset simulates real webpages and serves as a great test for the capability of the model to analyze and reason with multimodal data, because the answer to a question could appear in various modalities, or even potentially not exist at all. Additionally, we present AED (Allocating, Expert and Decision), a multi-agent system implemented through collaborative deployment, information interaction, and collective decision-making among different agents. Specifically, the Assignment Agent is in charge of selecting and activating expert agents, including those proficient in text, tables, and charts. The Decision Agent bears the responsibility of delivering the final verdict, drawing upon the analytical insights provided by these expert agents. We execute a comprehensive analysis, comparing AED with various state-of-the-art models in MMQA, including GPT-4. The experimental outcomes demonstrate that current methodologies, including GPT-4, are yet to meet the benchmarks set by our dataset. © 2024 ACM.

关键词： Question answering

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SOCA-DOM:A Mobile System-on-Chip Array System for Analyzing Big Data on the Move

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Journal of computer science & Technology 2022年第6期37卷 1271-1289页

作者： Le-Le Li Jiang-Yi Liu Jian-Ping Fan Xue-Hai Qian Kai Hwang Yeh-Ching Chung Zhi-Bin Yu Center for Heterogeneous and Intelligent Computing Shenzhen Institutes of Advanced Technology Chinese Academy of SciencesShenzhen 518055China School of Science and Engineering The Chinese University of Hong KongShenzhenShenzhen 518172China Center for High Performance Computing Shenzhen Institutes of Advanced TechnologyChinese Academy of Sciences Shenzhen 518055China Ming Hsieh Department of Electrical and Computer Engineering University of Southern CaliforniaLos Angeles CA 90089-0001U.S.A. Department of Computer Science University of Southern CaliforniaLos AngelesCA 90089-0001U.S.A. School of Data and Science The Chinese University of Hong KongShenzhenShenzhen 518172China

Recently,analyzing big data on the move is *** requires that the hardware resource should be low volume,low power,light in weight,high-performance,and highly scalable whereas the management software should be flexible and consume little hardware *** meet these requirements,we present a system named SOCA-DOM that encompasses a mobile system-on-chip array architecture and a two-tier“software-defined”resource manager named ***,we design an Ethernet communication board to support an array of mobile ***,we propose a two-tier software architecture for Chameleon to make it ***,we devise data,configuration,and control planes for Chameleon to make it“software-defined”and in turn consume hardware resources on ***,we design an accurate synthetic metric that represents the computational power of a computing *** employ 12 Apache Spark benchmarks to evaluate ***,SOCA-DOM consumes up to 9.4x less CPU resources and 13.5x less memory than Mesos which is an existing resource *** addition,we show that a 16-node SOCA-DOM consumes up to 4x less energy than two standard Xeon *** on the results,we conclude that an array architecture with fine-grained hardware resources and a software-defined resource manager works well for analyzing big data on the move.

关键词： edge computing mobile architecture resource management big data analytics software-defined systems

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Reliable and Efficient Concept Erasure of Text-to-Image Diffusion Models

arXiv

引用

arXiv 2024年

作者： Gong, Chao Chen, Kai Wei, Zhipeng Chen, Jingjing Jiang, Yu-Gang Shanghai Key Lab of Intell. Info. Processing School of Computer Science Fudan University China Shanghai Collaborative Innovation Center on Intelligent Visual Computing China

Text-to-image models encounter safety issues, including concerns related to copyright and Not-Safe-For-Work (NSFW) content. Despite several methods have been proposed for erasing inappropriate concepts from diffusion models, they often exhibit incomplete erasure, consume a lot of computing resources, and inadvertently damage generation ability. In this work, we introduce Reliable and Efficient Concept Erasure (RECE), a novel approach that modifies the model in 3 seconds without necessitating additional fine-tuning. Specifically, RECE efficiently leverages a closed-form solution to derive new target embeddings, which are capable of regenerating erased concepts within the unlearned model. To mitigate inappropriate content potentially represented by derived embeddings, RECE further aligns them with harmless concepts in cross-attention layers. The derivation and erasure of new representation embeddings are conducted iteratively to achieve a thorough erasure of inappropriate concepts. Besides, to preserve the model’s generation ability, RECE introduces an additional regularization term during the derivation process, resulting in minimizing the impact on unrelated concepts during the erasure process. All the processes above are in closed-form, guaranteeing extremely efficient erasure in only 3 seconds. Benchmarking against previous approaches, our method achieves more efficient and thorough erasure with minor damage to original generation ability and demonstrates enhanced robustness against red-teaming tools. Code is available at https://***/CharlesGong12/RECE. Copyright © 2024, The Authors. All rights reserved.

关键词： Benchmarking

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Advanced Persistent Threats (APT): evolution, anatomy, attribution and countermeasures

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Journal of Ambient Intelligence and Humanized computing 2023年第7期14卷 9355-9381页

作者： Sharma, Amit Gupta, Brij B. Singh, Awadhesh Kumar Saraswat, V.K. Department of Computer Engineering National Institute of Technology Kurukshetra Kurukshetra136119 India International Center for AI and Cyber Security Research and Innovations Department of Computer Science and Information Engineering Asia University Taichung Taiwan NITI Aayog New Delhi110001 India Lebanese American University Beirut Lebanon School of Computing Skyline University College Sharjah United Arab Emirates Department of Computer Engineering National Institute of Technology Kurukshetra Kurukshetra India Birkbeck University of London London United Kingdom

In today’s cyber warfare realm, every stakeholder in cyberspace is becoming more potent by developing advanced cyber weapons. They have equipped with the most advanced malware and maintain a hidden attribution. The precocious cyber weapons, targeted and motivated with some specific intention are called as Advanced Persistent Threats (APT). Developing defense mechanisms and performing attribution analysis of such advanced attacks are extremely difficult due to the intricate design of attack vector and sophisticated malware employed with high stealth and evasive techniques. These attacks also include advanced zero-day and negative-day exploits and payloads. This paper provides a comprehensive survey on the evolution of advanced malware design paradigms, APT attack vector and its anatomy, APT attack Tactics, Techniques, and Procedures (TTP) and specific case studies on open-ended APT attacks. The survey covers a detailed discussion on APT attack phases and comparative study on threat life-cycle specification by various organizations. This work also addresses the APT attack attribution and countermeasures against these attacks from classical signature and heuristic based detection to modern machine learning and genetics based detection mechanisms along with sophisticated zero-day and negative day malware countermeasure by various techniques like monitoring of network traffic and DNS logs, moving target based defense, and attack graph based defenses. Furthermore, the survey addresses various research scopes in the domain of APT cyber-attacks. © 2023, The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.

关键词： Life cycle

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